BAC Information

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BAC

Clone NameB6Ng01-202G05
Chromosome3 (Build37)
Map Location 26,857,942 - 27,010,393
singlet/doubletdoublet
Overlap geneSpata16, LOC665258, Ect2
Upstream geneNlgn1, LOC229152
Downstream geneAadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202G05.bB6Ng01-202G05.g
ACCGA022891GA022892
length1,188452
definitionB6Ng01-202G05.b B6Ng01-202G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,009,226 - 27,010,393)(26,857,942 - 26,858,399)
sequence
gaattcaaggccccttggaagataacgtgatcttgtcaggttgttagata
gagagcccttactctgcagaaatgatacagcgaatagatctgttgctgaa
agaaattgacactgtgtagtaatagtattaagagtttcttgggccttccc
aggggaataacattttaccaaatttacacttgccttataatgatattaca
tatatcagggtaagtaacagaatggcttatgcagtcttttctaggtggat
aactttgtaacattgaaatgcaaagctaatgaaaagttttgcttaaagtg
taattattggctataagatgaataatcatattagaactgaactataagca
acaaatgcagaaaatttcagataatataattatccacaagatggcagcaa
acatttacctatgttctgatacagcacaaaattattccagtttgttgaaa
tttttttgccttaagatttgcttatgcattgaaaaatttggtgacatcag
taagctcttttctgagtttaaggcttcacacatagtaaaataatttaaag
cccctcatttaatgtcttatttgagaatattttgccatattgaagaaagt
atgtttctaaatatgtatgttcaaatgatataaatatatgtacaactggt
catttttaaaaaagcaattctgattttttttaatcaatagtttttgactt
taaaaaaaaaattccctaaataatagctgcttgctcattttgttgttgaa
gtctcctttggtatgtaatcccagggagtcctcagacctgttaggattac
cacaccagcttaaggctgtttaactgagtaaaataagtatgattatttta
ttgtatatactgtttcatttattctgaccatttgtaaatgagttaacaca
acgcttctcacgctgaaagaaaactttaaaacaatatgtgtgaaactaaa
gccaagaataataactgatggttgtatagcaactctaggactcaggcatt
cttttatttttcagtcagaccttttatcttgtgtgtgaatttcaaggctg
gttacctagtccacactttttttcttctcggaaaccatggcgttcaccct
ttacagcttcccctaccacggagagaaattctttgggggggagctgtagt
ttttcaaggtgtgttctcacagagaggacctcttttgt
tggccagtgccctcattaaacccgtagaggagaaagaattggcagggcac
atgggtcatccctctgagcagctgctgctaacccagactcttggtttgtt
ttttgtttttgttttttttttttttttttgtaaaagcacattgtaaacct
ctacttgttcaactcacttcacctagttctaaaaaattacacgccttgga
aatggctaatgtctgtcaagcatcaaaaactcttccatgatcaaaaagaa
aaggagagagaggaagagagggcgagagggagggagagagagagagagag
agagagagagagagagagagagagagagagagagagcacatccacaagta
atcggtgataaacaatttaataaccaattgtctcctttcataaacacata
ctgaaggatcattggttcctgagacaaatgtgtaagtccaagcccctccc
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27009226_27010393
seq2: B6Ng01-202G05.b_47_1234 (reverse)

seq1  ACAAAAGAG----TCTACTGTGAG-ACACACTGTGAAAAACTACAGCTCC  45
      |||||||||    ||| ||||||| ||||||  |||||||||||||||||
seq2  ACAAAAGAGGTCCTCT-CTGTGAGAACACACCTTGAAAAACTACAGCTCC  49

seq1  CAC---AAGATTTTTTTTTCTCTGTTGTAGGGGAGGCTGT-AAGGGTGAA  91
      | |   ||||    ||| |||| || |||||||| ||||| |||||||||
seq2  CCCCCAAAGA---ATTTCTCTCCGTGGTAGGGGAAGCTGTAAAGGGTGAA  96

seq1  AGGCAGG---TACGAGAAG-AAAAGAGTG-GGACTAGGGTA-CAGCC-TG  134
       | || |   | ||||||| |||| |||| ||||||||  | ||||| ||
seq2  CGCCATGGTTTCCGAGAAGAAAAAAAGTGTGGACTAGGTAACCAGCCTTG  146

seq1  AAATTCACAC---AGATAAAAGGTCTGACTG-AAAATAAA--GATGCCTG  178
      ||||||||||   |||||||||||||||||| ||||||||   |||||||
seq2  AAATTCACACACAAGATAAAAGGTCTGACTGAAAAATAAAAGAATGCCTG  196

seq1  AGTCCTAGAGTTGGCTATACAACCATCAGTTATTATTCTTGGCTTTAGTT  228
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGAGTT-GCTATACAACCATCAGTTATTATTCTTGGCTTTAGTT  245

seq1  TCACACATATTGTTTTAAAGTTTTCTTTCATCCTGA-AAGC--TTTGTTA  275
      |||||||||||||||||||||||||||||| | ||| ||||  | |||||
seq2  TCACACATATTGTTTTAAAGTTTTCTTTCAGCGTGAGAAGCGTTGTGTTA  295

seq1  ACTCATTTACAAATGGTCAGAATAAATGAAACAGTATATACAATAAAATA  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTACAAATGGTCAGAATAAATGAAACAGTATATACAATAAAATA  345

seq1  ATCATACTTATTTTACTCAGTTAAACAGCCTTAAGCTGGTGTGGTAATCC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTTATTTTACTCAGTTAAACAGCCTTAAGCTGGTGTGGTAATCC  395

seq1  TAACAGGTCTGAGGACTCCCTGGGATTACATACCAAAGGAGACTTCAACA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGTCTGAGGACTCCCTGGGATTACATACCAAAGGAGACTTCAACA  445

seq1  ACAAAATGAGCAAGCAGCTATTATTTAGGGAATTTTTTTTTTAAAGTCAA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGAGCAAGCAGCTATTATTTAGGGAATTTTTTTTTTAAAGTCAA  495

seq1  AAACTATTGATTAAAAAAAATCAGAATTGCTTTTTTAAAAATGACCAGTT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTGATTAAAAAAAATCAGAATTGCTTTTTTAAAAATGACCAGTT  545

seq1  GTACATATATTTATATCATTTGAACATACATATTTAGAAACATACTTTCT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATATTTATATCATTTGAACATACATATTTAGAAACATACTTTCT  595

seq1  TCAATATGGCAAAATATTCTCAAATAAGACATTAAATGAGGGGCTTTAAA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGGCAAAATATTCTCAAATAAGACATTAAATGAGGGGCTTTAAA  645

seq1  TTATTTTACTATGTGTGAAGCCTTAAACTCAGAAAAGAGCTTACTGATGT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTACTATGTGTGAAGCCTTAAACTCAGAAAAGAGCTTACTGATGT  695

seq1  CACCAAATTTTTCAATGCATAAGCAAATCTTAAGGCAAAAAAATTTCAAC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATTTTTCAATGCATAAGCAAATCTTAAGGCAAAAAAATTTCAAC  745

seq1  AAACTGGAATAATTTTGTGCTGTATCAGAACATAGGTAAATGTTTGCTGC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAATAATTTTGTGCTGTATCAGAACATAGGTAAATGTTTGCTGC  795

seq1  CATCTTGTGGATAATTATATTATCTGAAATTTTCTGCATTTGTTGCTTAT  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTGGATAATTATATTATCTGAAATTTTCTGCATTTGTTGCTTAT  845

seq1  AGTTCAGTTCTAATATGATTATTCATCTTATAGCCAATAATTACACTTTA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTCTAATATGATTATTCATCTTATAGCCAATAATTACACTTTA  895

seq1  AGCAAAACTTTTCATTAGCTTTGCATTTCAATGTTACAAAGTTATCCACC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACTTTTCATTAGCTTTGCATTTCAATGTTACAAAGTTATCCACC  945

seq1  TAGAAAAGACTGCATAAGCCATTCTGTTACTTACCCTGATATATGTAATA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGACTGCATAAGCCATTCTGTTACTTACCCTGATATATGTAATA  995

seq1  TCATTATAAGGCAAGTGTAAATTTGGTAAAATGTTATTCCCCTGGGAAGG  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAAGGCAAGTGTAAATTTGGTAAAATGTTATTCCCCTGGGAAGG  1045

seq1  CCCAAGAAACTCTTAATACTATTACTACACAGTGTCAATTTCTTTCAGCA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAACTCTTAATACTATTACTACACAGTGTCAATTTCTTTCAGCA  1095

seq1  ACAGATCTATTCGCTGTATCATTTCTGCAGAGTAAGGGCTCTCTATCTAA  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTATTCGCTGTATCATTTCTGCAGAGTAAGGGCTCTCTATCTAA  1145

seq1  CAACCTGACAAGATCACGTTATCTTCCAAGGGGCCTTGAATTC  1168
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGACAAGATCACGTTATCTTCCAAGGGGCCTTGAATTC  1188

seq1: chr3_26857942_26858399
seq2: B6Ng01-202G05.g_65_522

seq1  GAATTCTGGCCAGTGCCCTCATTAAACCCGTAGAGGAGAAAGAATTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCAGTGCCCTCATTAAACCCGTAGAGGAGAAAGAATTGGCA  50

seq1  GGGCACATGGGTCATCCCTCTGAGCAGCTGCTGCTAACCCAGACTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATGGGTCATCCCTCTGAGCAGCTGCTGCTAACCCAGACTCTTGG  100

seq1  TTTGTTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTGTAAAAGCACATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGTTTTTGTTTTTTTTTTTTTTTTTTGTAAAAGCACATTGT  150

seq1  AAACCTCTACTTGTTCAACTCACTTCACCTAGTTCTAAAAAATTACACGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTACTTGTTCAACTCACTTCACCTAGTTCTAAAAAATTACACGC  200

seq1  CTTGGAAATGGCTAATGTCTGTCAAGCATCAAAAACTCTTCCATGATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAATGGCTAATGTCTGTCAAGCATCAAAAACTCTTCCATGATCAA  250

seq1  AAAGAAAAGGAGAGAGAGGAAGAGAGGGCGAGAGGGAGGGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGGAGAGAGAGGAAGAGAGGGCGAGAGGGAGGGAGAGAGAGAG  300

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACATCCA  350

seq1  CAAGTAATCGGTGATAAACAATTTAATAACCAATTGTCTCCTTTCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATCGGTGATAAACAATTTAATAACCAATTGTCTCCTTTCATAAA  400

seq1  CACATACTGAAGGATCATTGGTTCCTGAGACAAATGTGTAAGTCCAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTGAAGGATCATTGGTTCCTGAGACAAATGTGTAAGTCCAAGCC  450

seq1  CCTCCCCC  458
      ||||||||
seq2  CCTCCCCC  458