BAC Information

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BAC

Clone NameB6Ng01-202M04
Chromosome3 (Build37)
Map Location 54,920,063 - 55,031,376
singlet/doubletdoublet
Overlap geneSpg20, A730037C10Rik, Sohlh2
Upstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik
Downstream geneDclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202M04.bB6Ng01-202M04.g
ACCGA023170GA023171
length8311,026
definitionB6Ng01-202M04.b B6Ng01-202M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,030,547 - 55,031,376)(54,920,063 - 54,921,084)
sequence
gaattccacacatgaccagaaagccacttacatttagaggcttatcttag
aattgaggaagctgggggcccggagtttgcacctgtcagtggtcactccc
atagtctggttatattgccagctgcaacagtcatagtctgtcacactgtc
tttctggtcggaaagggggaaagaactgaaagacacgtgtgacagaggta
aaacagtttttcctcagggaacagtgtttttttgagccatagtgtggtct
ccaagccaggggaagagctgaaccgcacaattcaatcctatttcaaatgc
agaagtattagggagctaagccaggctccgcccagtgggtggtatcaaga
tgactaatctctaattacatcctaggagtgacagcagaggcgggtgagcc
caggcactcagctgtcaggcgaaagggcagaggtcaggagggagtggctg
gcgacaggtgcatttgtgggcagacccagaggggcctgtagacttgtagg
atgcgcagggcgcagtctggaagctcttgggtgctcattgcccgcaagcg
ccgctgcattctcctggttcccgaatagcaatccccccaccctccccaac
cccccaatccctacccttgcttccttactgtaaccctgcccagccaagtc
tcttaaggactctgtcagtcttctcagagccgggttagacccacaacagc
tgctcaggccacgtgagacccacaaggtctgaagccgcataataagggga
tgaatatctccacgtaggaattacactactggattagggaatgttaaaac
acccggcctcacaaagaaatagctttgtggg
tcagcttgggattccactcaccacgtgagagggtaggaagtgtgtaagac
actgtcctgaagcctgcctggcgcggcagcccgctcgctctccagcctct
gtcacagctgttgaaacctgggaatttgtgcttctggtttttggatttat
ctgttctctgtgagttaatccccttactcttctgtccgtcatttttctct
attctgcatttcggagcattttagaactcacattgggctttctaaaagaa
tgtccgcattttattcttatttcctgttgttccttcatttcattgctctt
cattctgggcattttctctaactttataaactctctatccaagctatttt
atgtgtaatttctaaaagctgaatatgttcccccccttagggcacatgta
tatctttgttttatggatattctattgcccccccccctctggtgtatgca
tgcgttggagaccagaggtcagtgggtggtgatgttcatcaggggttggt
caccatgtggtttggtttggtttgagacaggctctagaactgtcttggag
gaggtagactagcagtctaccaatgagtcccagggatccatcttctcagc
actggggttagcactcaagaagaggccctcctgagtttggagctgaccac
tgagccacctctcctgccctctttactgctaccaataacatttatcaact
caccacgtacttattgggtgctttctttgaagggacagaaagataagaga
ggcctctgtccttgaaatctattctcataggaatagagggctaagtacac
tgcgagctaactggttaatggcatgtgatgattcttgtcttgcatagatg
gagagagaaccagaaaatggagaaccctgctgaaattaagatcatcaagg
aagcatacgagaaggcctttatgtttgttaataaaggactgaacactgta
cgagttttgggcagatggagaagcaagtactattaccagccaggaattag
tacacctgcctatgggcatcagcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55030547_55031376
seq2: B6Ng01-202M04.b_45_875 (reverse)

seq1  CCCACAAAGCTATTTCTTTGTGAGGCCGGGTGTTTT-ACATTCCCTAATC  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCACAAAGCTATTTCTTTGTGAGGCCGGGTGTTTTAACATTCCCTAATC  50

seq1  CAGTCGTGTAATTCCTACGTGGAAATATTCATCCCCTTATTATGCGGCTT  99
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGTAGTGTAATTCCTACGTGGAGATATTCATCCCCTTATTATGCGGCTT  100

seq1  CAGACCTTGTGGGTCTCACGTGGCCTGAGCAGCTGTTGTGGGTCTAACCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGTGGGTCTCACGTGGCCTGAGCAGCTGTTGTGGGTCTAACCC  150

seq1  GGCTCTGAGAAGACTGACAGAGTCCTTAAGAGACTTGGCTGGGCAGGGTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGAAGACTGACAGAGTCCTTAAGAGACTTGGCTGGGCAGGGTT  200

seq1  ACAGTAAGGAAGCAAGGGTAGGGATTGGGGGGTTGGGGAGGGTGGGGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGGAAGCAAGGGTAGGGATTGGGGGGTTGGGGAGGGTGGGGGGA  250

seq1  TTGCTATTCGGGAACCAGGAGAATGCAGCGGCGCTTGCGGGCAATGAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTCGGGAACCAGGAGAATGCAGCGGCGCTTGCGGGCAATGAGCA  300

seq1  CCCAAGAGCTTCCAGACTGCGCCCTGCGCATCCTACAAGTCTACAGGCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGCTTCCAGACTGCGCCCTGCGCATCCTACAAGTCTACAGGCCC  350

seq1  CTCTGGGTCTGCCCACAAATGCACCTGTCGCCAGCCACTCCCTCCTGACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTCTGCCCACAAATGCACCTGTCGCCAGCCACTCCCTCCTGACC  400

seq1  TCTGCCCTTTCGCCTGACAGCTGAGTGCCTGGGCTCACCCGCCTCTGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTTCGCCTGACAGCTGAGTGCCTGGGCTCACCCGCCTCTGCTG  450

seq1  TCACTCCTAGGATGTAATTAGAGATTAGTCATCTTGATACCACCCACTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTAGGATGTAATTAGAGATTAGTCATCTTGATACCACCCACTGG  500

seq1  GCGGAGCCTGGCTTAGCTCCCTAATACTTCTGCATTTGAAATAGGATTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGCCTGGCTTAGCTCCCTAATACTTCTGCATTTGAAATAGGATTGA  550

seq1  ATTGTGCGGTTCAGCTCTTCCCCTGGCTTGGAGACCACACTATGGCTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCGGTTCAGCTCTTCCCCTGGCTTGGAGACCACACTATGGCTCAA  600

seq1  AAAAACACTGTTCCCTGAGGAAAAACTGTTTTACCTCTGTCACACGTGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACTGTTCCCTGAGGAAAAACTGTTTTACCTCTGTCACACGTGTC  650

seq1  TTTCAGTTCTTTCCCCCTTTCCGACCAGAAAGACAGTGTGACAGACTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCTTTCCCCCTTTCCGACCAGAAAGACAGTGTGACAGACTATG  700

seq1  ACTGTTGCAGCTGGCAATATAACCAGACTATGGGAGTGACCACTGACAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCAGCTGGCAATATAACCAGACTATGGGAGTGACCACTGACAGG  750

seq1  TGCAAACTCCGGGCCCCCAGCTTCCTCAATTCTAAGATAAGCCTCTAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTCCGGGCCCCCAGCTTCCTCAATTCTAAGATAAGCCTCTAAAT  800

seq1  GTAAGTGGCTTTCTGGTCATGTGTGGAATTC  830
      |||||||||||||||||||||||||||||||
seq2  GTAAGTGGCTTTCTGGTCATGTGTGGAATTC  831

seq1: chr3_54920063_54921084
seq2: B6Ng01-202M04.g_74_1099

seq1  TCAGCTTGGGATTCCACTCACCACGTGAGAGGGTAGGAAGTGTGTAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGGGATTCCACTCACCACGTGAGAGGGTAGGAAGTGTGTAAGAC  50

seq1  ACTGTCCTGAAGCCTGCCTGGCGCGGCAGCCCGCTCGCTCTCCAGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTGAAGCCTGCCTGGCGCGGCAGCCCGCTCGCTCTCCAGCCTCT  100

seq1  GTCACAGCTGTTGAAACCTGGGAATTTGTGCTTCTGGTTTTTGGATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCTGTTGAAACCTGGGAATTTGTGCTTCTGGTTTTTGGATTTAT  150

seq1  CTGTTCTCTGTGAGTTAATCCCCTTACTCTTCTGTCCGTCATTTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCTGTGAGTTAATCCCCTTACTCTTCTGTCCGTCATTTTTCTCT  200

seq1  ATTCTGCATTTCGGAGCATTTTAGAACTCACATTGGGCTTTCTAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCATTTCGGAGCATTTTAGAACTCACATTGGGCTTTCTAAAAGAA  250

seq1  TGTCCGCATTTTATTCTTATTTCCTGTTGTTCCTTCATTTCATTGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGCATTTTATTCTTATTTCCTGTTGTTCCTTCATTTCATTGCTCTT  300

seq1  CATTCTGGGCATTTTCTCTAACTTTATAAACTCTCTATCCAAGCTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGGCATTTTCTCTAACTTTATAAACTCTCTATCCAAGCTATTTT  350

seq1  ATGTGTAATTTCTAAAAGCTGAATATGTTCCCCCCCTTAGGGCACATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAATTTCTAAAAGCTGAATATGTTCCCCCCCTTAGGGCACATGTA  400

seq1  TATCTTTGTTTTATGGATATTCTATTGCCCCCCCCCCTCTGGTGTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGTTTTATGGATATTCTATTGCCCCCCCCCCTCTGGTGTATGCA  450

seq1  TGCGTTGGAGACCAGAGGTCAGTGGGTGGTGATGTTCATCAGGGGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGGAGACCAGAGGTCAGTGGGTGGTGATGTTCATCAGGGGTTGGT  500

seq1  CACCATGTGGTTTGGTTTGGTTTGAGACAGGCTCTAGAACTGTCTTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTTGGTTTGGTTTGAGACAGGCTCTAGAACTGTCTTGGAG  550

seq1  GAGGTAGACTAGCAGTCTACCAATGAGTCCCAGGGATCCATCTTCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGACTAGCAGTCTACCAATGAGTCCCAGGGATCCATCTTCTCAGC  600

seq1  ACTGGGGTTAGCACTCAAGAAGAGGCCCTCCTGAGTTTGGAGCTGACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGTTAGCACTCAAGAAGAGGCCCTCCTGAGTTTGGAGCTGACCAC  650

seq1  TGAGCCACCTCTCCTGCCCTCTTTACTGCTACCAATAACATTTATCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCTCTCCTGCCCTCTTTACTGCTACCAATAACATTTATCAACT  700

seq1  CACCACGTACTTATTGGGTGCTTTCTTTGAAGGGACAG-AAGATAAGAGA  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACCACGTACTTATTGGGTGCTTTCTTTGAAGGGACAGAAAGATAAGAGA  750

seq1  GGCCTCTGTCCTTGAAATCTATTCTCATAGGAA-AGAGGGCTAAGTACAC  798
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCCTCTGTCCTTGAAATCTATTCTCATAGGAATAGAGGGCTAAGTACAC  800

seq1  TGCGAGCTAACTGGTTAATGGCAGGTGATGATTCTTGTCTTGCAGAGATG  848
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TGCGAGCTAACTGGTTAATGGCATGTGATGATTCTTGTCTTGCATAGATG  850

seq1  GAGAGAGAACCAGAAAATGGAGAA-CCTGCTGAAATTAAGATCATCAAGG  897
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGAGAGAACCAGAAAATGGAGAACCCTGCTGAAATTAAGATCATCAAGG  900

seq1  AAGCATACGAGAAGGCCTTTATGTTTGTTAATAAAGGACTGAACAC-GGA  946
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  AAGCATACGAGAAGGCCTTTATGTTTGTTAATAAAGGACTGAACACTGTA  950

seq1  CGAG-TTAGGGCAGAAGGAAGAAGCAAAGAACTATTACAAGCAAGGAA-T  994
      |||| || ||||||| || |||||| ||| |||||||| ||| ||||| |
seq2  CGAGTTTTGGGCAGATGG-AGAAGC-AAGTACTATTACCAGCCAGGAATT  998

seq1  AGGACACCTGCTTAGGGGCATCAGCATC  1022
      || |||||||| || |||||||||||||
seq2  AGTACACCTGCCTATGGGCATCAGCATC  1026