BAC Information

Click to search

BAC

Clone NameB6Ng01-202O20
Chromosome3 (Build37)
Map Location 27,243,818 - 27,376,011
singlet/doubletdoublet
Overlap geneGhsr, Fndc3b
Upstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202O20.bB6Ng01-202O20.g
ACCGA023287GA023288
length1,085818
definitionB6Ng01-202O20.b B6Ng01-202O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,243,818 - 27,244,885)(27,375,203 - 27,376,011)
sequence
gaattcagaattatagtcttacccatccctaatggttcattggcaaggag
agtggcattgggatgggcttagatgaaccaagatgacccttccgtgggca
gaagatggtgctaagcgtttccaaagtgctgccccggttgcatttctgat
gcggtgacaaagtatattgatgagattatctactttagctcagaaatccg
ggtagcaccgtagtagaacgtcagtgtggaatgaacttaaaaatcatgat
tcacagtcaagcacagagagatgaacggatgcatgcttgggacttaactg
agactctcttcccagaagattctagatcacctcagtcgggtgtgcactct
cttcataaactcagggctctgggtgttggaaagatgagaaaatggagtcc
tagcacaacagtgctccacaaatcagtgtggaagccaaagagatgatccc
caaagtgtggcgacccttctggtcatctgccttgtagaagataatcaaat
taaggacaactgttccgttttttttcttcttctgattttctacagcagct
tcaagtcctgatacattttcaaggaaagattaaatagggttgtgacgctt
cttaaaagagatagaaaacactaccgggaagagacagtggttctgaattg
gatgtgtagctcaaagcaatttgggggaaaatataattaattaaagcaag
ctgatgtgctcggcttcagttcacagaagcatcatctccgcctggtaggg
caattcatcattagtcacaggaaatccagagagaggatgactccgcgctg
attggttaggcgctccatccctcagctccacctctctcagagttggcgcc
accttctggttggtgactgaacctgactccagttaccacaaacacttcaa
ggtgctctctccaaaggggtgcatcattagctccttggaggctataaggg
tcccttcctgaacaggtccctcattgctgtttatatcttaatttctcagg
gccagagcctttgatggaatgagtcaacaatccatccattggagtcaatc
ttttgcaaagaacatgttgatttagcaaacacctt

gaattccatgtccaccgtcgctccctgtgccctaggcttctcttgtctgc
cttgagtcttgataaaccacagtgtttagaccctgtgcccccaggctgtt
agatactagagctcggacttttccacacaaaaggctttttctactcttgc
ttttctgttgtgtgttcaggtgagaaggaagagcaagaagtatcagagag
cccaagaggcagggaagggcaccccatgctgacacatgagagaccgggag
ggagggagggcaggctacagtaagaaggcaggacccagatgtgatcctca
gcacagctcagcaagctggagggccggaactgtgcgtgggcgccatacct
gggtgcctggatgccctgctcgggcttcttctcagtccccaggaggacag
ccctgatctcctctctgccttggtctgccgcccctgagaagcaagactgc
cctgcacccctcaggttgctcaccacagctcaaccaagaggggagggtgg
ctgttggttagtttgtctgtgttgttgtttttaatttggaggaagaataa
attacttttctaaaggtataaacttttataataaccaactttaactttca
gctatagattagaaagaagttttaaataggcagaaagtggtaagaaaaaa
aatgtagtgcggtgcttaagatctttttgcatgtatgattatccccaaat
ttcactttaagatcaacttgtatagtaaggccgctgtacttctttggggg
aaaatggtctctgttcctagagtgactattaaccccttaaaaagtaattg
taggaagtaggtctctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27243818_27244885
seq2: B6Ng01-202O20.b_49_1133

seq1  GAATTCAGAATTATAGTCTTACCCATCCCTAATGGTTCATTGGCAAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATTATAGTCTTACCCATCCCTAATGGTTCATTGGCAAGGAG  50

seq1  AGTGGCATTGGGATGGGCTTAGATGAACCAAGATGACCCTTCCGTGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCATTGGGATGGGCTTAGATGAACCAAGATGACCCTTCCGTGGGCA  100

seq1  GAAGATGGTGCTAAGCGTTTCCAAAGTGCTGCCCCGGTTGCATTTCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGTGCTAAGCGTTTCCAAAGTGCTGCCCCGGTTGCATTTCTGAT  150

seq1  GCGGTGACAAAGTATATTGATGAGATTATCTACTTTAGCTCAGAAATCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGACAAAGTATATTGATGAGATTATCTACTTTAGCTCAGAAATCCG  200

seq1  GGTAGCACCGTAGTAGAACGTCAGTGTGGAATGAACTTAAAAATCATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCACCGTAGTAGAACGTCAGTGTGGAATGAACTTAAAAATCATGAT  250

seq1  TCACAGTCAAGCACAGAGAGATGAACGGATGCATGCTTGGGACTTAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCAAGCACAGAGAGATGAACGGATGCATGCTTGGGACTTAACTG  300

seq1  AGACTCTCTTCCCAGAAGATTCTAGATCACCTCAGTCGGGTGTGCACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCTTCCCAGAAGATTCTAGATCACCTCAGTCGGGTGTGCACTCT  350

seq1  CTTCATAAACTCAGGGCTCTGGGTGTTGGAAAGATGAGAAAATGGAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAACTCAGGGCTCTGGGTGTTGGAAAGATGAGAAAATGGAGTCC  400

seq1  TAGCACAACAGTGCTCCACAAATCAGTGTGGAAGCCAAAGAGATGATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAACAGTGCTCCACAAATCAGTGTGGAAGCCAAAGAGATGATCCC  450

seq1  CAAAGTGTGGCGACCCTTCTGGTCATCTGCCTTGTAGAAGATAATCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTGGCGACCCTTCTGGTCATCTGCCTTGTAGAAGATAATCAAAT  500

seq1  TAAGGACAACTGTTCCGTTTTTTTTCTTCTTCTGATTTTCTACAGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAACTGTTCCGTTTTTTTTCTTCTTCTGATTTTCTACAGCAGCT  550

seq1  TCAAGTCCTGATACATTTTCAAGGAAAGATTAAATAGGGTTGTGACGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCTGATACATTTTCAAGGAAAGATTAAATAGGGTTGTGACGCTT  600

seq1  CTTAAAAGAGATAGAAAACACTACCGGGAAGAGACAGTGGTTCTGAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGAGATAGAAAACACTACCGGGAAGAGACAGTGGTTCTGAATTG  650

seq1  GATGTGTAGCTCAAAGCAATTTGGGGGAAAATATAATTAATTAAAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTAGCTCAAAGCAATTTGGGGGAAAATATAATTAATTAAAGCAAG  700

seq1  CTGATGTGCTCGGCTTCAGTTCACAGAAGCATCATCTCCGCCTGGTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGCTCGGCTTCAGTTCACAGAAGCATCATCTCCGCCTGGTAGGG  750

seq1  CAATTCATCATTAGTCACAGGAAATCCAGAGAGAGGATGACTCCGCGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATCATTAGTCACAGGAAATCCAGAGAGAGGATGACTCCGCGCTG  800

seq1  ATTGGTTAGGCGCTCCATCCCTCAGCTCCACCTCTCTCAGAGTTGGCGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTAGGCGCTCCATCCCTCAGCTCCACCTCTCTCAGAGTTGGCGCC  850

seq1  ACCTTCTGGTTGGTGACTGAA-CTGACTCCAGTTACCACAAACACTTCAA  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACCTTCTGGTTGGTGACTGAACCTGACTCCAGTTACCACAAACACTTCAA  900

seq1  GGTGCTCTCTCCAAAGGGGTGCATCATTAGCTCCTTGGAG--CATAAGG-  946
      ||||||||||||||||||||||||||||||||||||||||   |||||| 
seq2  GGTGCTCTCTCCAAAGGGGTGCATCATTAGCTCCTTGGAGGCTATAAGGG  950

seq1  -TCCTTCCTG-ACAGGTCCCTCATTGCTGTTTATATCTT-ATTTCTCA-G  992
        |||||||| |||||||||||||||||||||||||||| |||||||| |
seq2  TCCCTTCCTGAACAGGTCCCTCATTGCTGTTTATATCTTAATTTCTCAGG  1000

seq1  GCCAGAGC--TTGATGG-ATGAGTC-ACAATCCAT-CATT-GAGTCCATC  1036
      ||||||||  ||||||| ||||||| ||||||||| |||| ||||| |||
seq2  GCCAGAGCCTTTGATGGAATGAGTCAACAATCCATCCATTGGAGTCAATC  1050

seq1  -TTTGCAAAG-ACATG-TGATTTAGCAAACACCTT  1068
       ||||||||| ||||| ||||||||||||||||||
seq2  TTTTGCAAAGAACATGTTGATTTAGCAAACACCTT  1085


seq1: chr3_27375203_27376011
seq2: B6Ng01-202O20.g_65_882 (reverse)

seq1  GCAG-GACCTAC-TCCTACAAATAC-TTTTAAGGGG-TAATGGTCACTCT  46
      |||| ||||||| |||||||| ||| |||||||||| |||| ||||||||
seq2  GCAGAGACCTACTTCCTACAATTACTTTTTAAGGGGTTAATAGTCACTCT  50

seq1  AGGAACAGAGACCA-TTTCCCCCAAAG-AGTACAGCTGCCTTACTATAC-  93
      |||||||||||||| |||||||||||| |||||||| |||||||||||| 
seq2  AGGAACAGAGACCATTTTCCCCCAAAGAAGTACAGCGGCCTTACTATACA  100

seq1  AGTTGATCTTAAAGTGAAATTTGGGGATAAATCATACATGC-AAAAGATC  142
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  AGTTGATCTTAAAGTGAAATTTGGGGAT-AATCATACATGCAAAAAGATC  149

seq1  TTAAGCACCGCACTACATTTTTTTTCTTACC-CTTTCTGCCTATTT-AAA  190
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  TTAAGCACCGCACTACATTTTTTTTCTTACCACTTTCTGCCTATTTAAAA  199

seq1  CTTCTTTCTAATCTATAGCTGAAAGTTAAAGTTGGTTATTATAAAAGTTT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTAATCTATAGCTGAAAGTTAAAGTTGGTTATTATAAAAGTTT  249

seq1  ATACCTTTAGAAAAGTAATTTATTCTTCCTCCAAATTAAAAACAACAACA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTAGAAAAGTAATTTATTCTTCCTCCAAATTAAAAACAACAACA  299

seq1  CAGACAAACTAACCAACAGCCACCCTCCCCTCTTGGTTGAGCTGTGGTGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAACTAACCAACAGCCACCCTCCCCTCTTGGTTGAGCTGTGGTGA  349

seq1  GCAACCTGAGGGGTGCAGGGCAGTCTTGCTTCTCAGGGGCGGCAGACCAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGAGGGGTGCAGGGCAGTCTTGCTTCTCAGGGGCGGCAGACCAA  399

seq1  GGCAGAGAGGAGATCAGGGCTGTCCTCCTGGGGACTGAGAAGAAGCCCGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAGGAGATCAGGGCTGTCCTCCTGGGGACTGAGAAGAAGCCCGA  449

seq1  GCAGGGCATCCAGGCACCCAGGTATGGCGCCCACGCACAGTTCCGGCCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCATCCAGGCACCCAGGTATGGCGCCCACGCACAGTTCCGGCCCT  499

seq1  CCAGCTTGCTGAGCTGTGCTGAGGATCACATCTGGGTCCTGCCTTCTTAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGCTGAGCTGTGCTGAGGATCACATCTGGGTCCTGCCTTCTTAC  549

seq1  TGTAGCCTGCCCTCCCTCCCTCCCGGTCTCTCATGTGTCAGCATGGGGTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTGCCCTCCCTCCCTCCCGGTCTCTCATGTGTCAGCATGGGGTG  599

seq1  CCCTTCCCTGCCTCTTGGGCTCTCTGATACTTCTTGCTCTTCCTTCTCAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCTGCCTCTTGGGCTCTCTGATACTTCTTGCTCTTCCTTCTCAC  649

seq1  CTGAACACACAACAGAAAAGCAAGAGTAGAAAAAGCCTTTTGTGTGGAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACACAACAGAAAAGCAAGAGTAGAAAAAGCCTTTTGTGTGGAAA  699

seq1  AGTCCGAGCTCTAGTATCTAACAGCCTGGGGGCACAGGGTCTAAACACTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGAGCTCTAGTATCTAACAGCCTGGGGGCACAGGGTCTAAACACTG  749

seq1  TGGTTTATCAAGACTCAAGGCAGACAAGAGAAGCCTAGGGCACAGGGAGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATCAAGACTCAAGGCAGACAAGAGAAGCCTAGGGCACAGGGAGC  799

seq1  GACGGTGGACATGGAATTC  809
      |||||||||||||||||||
seq2  GACGGTGGACATGGAATTC  818


| Home | SequenceCutter | Blast | Download |