BAC Information

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BAC

Clone NameB6Ng01-203I01
Chromosome3 (Build37)
Map Location 121,187,094 - 121,188,172
singlet/doubletsinglet
Overlap geneSlc44a3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203I01.bB6Ng01-203I01.g
ACCGA023697GA023698
length1,0841,174
definitionB6Ng01-203I01.b B6Ng01-203I01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccccgatcctcccacctccatctccacagtgctgggattactggc
acacacttcgcctggtgtacgtggtgctgggaacgggacttgcgtgctag
gttagccctctaccagcttagcagcctcatctgtgcccattcttcttctt
ggtagattaagatctccatgtcatattgaagaactcctttgcccaaacct
atggttactgacaggatttgggtctgtgctccagtttggattattttgtt
atttatggtgggagtctatatatctatatatgactctatctctatctcta
tctatctatctatctatctatctatctatctatctatctatctatctatc
tagtgagagagcttcctttttcttccttataagaaagactgccctttccc
gttaattatggcagtgtctgtattactcattcttcatgtcgctgttctgg
tttttccctctgcagttctcttgtgtcctctctcccatgagggctaatct
ttactatctgtcttccttcttaagcctttacttcactttcagaaagtcat
ttagaccaggtccttccaaacccttctctcctgtcaacactggcatccat
cttttctctctgttccatccattcctccccctccagctcttctttcccag
cctcctgcccccagcacttctgacgcaatgaggccacgatagtcagtgga
ggccatggcttacagcacagaccccaagatcagaatatcaagagagccac
tcctgcttgtctcacgaacgaacgcagagccggagcacggccagcttact
cttgttaccctgcgcaatcattcccactgcggatctggcccaaagatatc
ttatcttattttaatgcaccgcatctcaaaacctctttgccatcagctgg
tgtccagactcgtgcacacagctttgaggagagaggcctggcatttcagt
ccttgagtgtatccactaggatggcttcacttgctatcttgccccactct
tctgaaaaaacgcccaatattatctattggtgtttttaatataagtggct
tctggttattagatccaaatgcattctctaaatg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaggatcccgcaatacctctcctgggc
atatatctagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatttctaggcaa
atggatagacctggagggcatcatcctgagtgaggtaatacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttattatacccgagatataagatacaatttgcaaaacacatgaaactgaa
gaagaacgaagaccaaagtgtggacaccttgccccttcttagaattggaa
acaatcacccatggaaggagttacagagacaaagtttggagctgagacaa
aaggatggaccatctagagactgccatatccagggatccatcccataatt
agcctccaaacgatgacaccattgcatatactagcaagcgttggctgaaa
ggaccctgatatagctctctcttgtgagactaggctggggcctagcaaac
acataagtggatgctcacagtcagctattggatggagcacaggcccccaa
tgaaggaactagagaaagtatccaggagctaaagagatctgcaccctgta
ggtgcacacattatgactaaccagtaccggagctctgactctagctgcat
atgtatcaaaagatgctagtccgtcaatcactggaaagaaaggtccattg
aacgcaaccttttaattgccaagttcaggaatgtcaggacctaaacttgg
aatgcgtggtggattaggaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121187094_121188172
seq2: B6Ng01-203I01.b_44_1127

seq1  GAATTCCCCGATCCTCCCACCTCCATCTCCACAGTGCTGGGATTACTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGATCCTCCCACCTCCATCTCCACAGTGCTGGGATTACTGGC  50

seq1  ACACACTTCGCCTGGTGTACGTGGTGCTGGGAACGGGACTTGCGTGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCGCCTGGTGTACGTGGTGCTGGGAACGGGACTTGCGTGCTAG  100

seq1  GTTAGCCCTCTACCAGCTTAGCAGCCTCATCTGTGCCCATTCTTCTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCCCTCTACCAGCTTAGCAGCCTCATCTGTGCCCATTCTTCTTCTT  150

seq1  GGTAGATTAAGATCTCCATGTCATATTGAAGAACTCCTTTGCCCAAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTAAGATCTCCATGTCATATTGAAGAACTCCTTTGCCCAAACCT  200

seq1  ATGGTTACTGACAGGATTTGGGTCTGTGCTCCAGTTTGGATTATTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACTGACAGGATTTGGGTCTGTGCTCCAGTTTGGATTATTTTGTT  250

seq1  ATTTATGGTGGGAGTCTATATATCTATATATGACTCTATCTCTATCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGTGGGAGTCTATATATCTATATATGACTCTATCTCTATCTCTA  300

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  350

seq1  TAGTGAGAGAGCTTCCTTTTTCTTCCTTATAAGAAAGACTGCCCTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGAGAGCTTCCTTTTTCTTCCTTATAAGAAAGACTGCCCTTTCCC  400

seq1  GTTAATTATGGCAGTGTCTGTATTACTCATTCTTCATGTCGCTGTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTATGGCAGTGTCTGTATTACTCATTCTTCATGTCGCTGTTCTGG  450

seq1  TTTTTCCCTCTGCAGTTCTCTTGTGTCCTCTCTCCCATGAGGGCTAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTCTGCAGTTCTCTTGTGTCCTCTCTCCCATGAGGGCTAATCT  500

seq1  TTACTATCTGTCTTCCTTCTTAAGCCTTTACTTCACTTTCAGAAAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCTGTCTTCCTTCTTAAGCCTTTACTTCACTTTCAGAAAGTCAT  550

seq1  TTAGACCAGGTCCTTCCAAACCCTTCTCTCCTGTCAACACTGGCATCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCAGGTCCTTCCAAACCCTTCTCTCCTGTCAACACTGGCATCCAT  600

seq1  CTTTTCTCTCTGTTCCATCCATTCCTCCCCCTCCAGCTCTTCTTTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTCTGTTCCATCCATTCCTCCCCCTCCAGCTCTTCTTTCCCAG  650

seq1  CCTCCTGCCCCCAGCACTTCTGACGCAATGAGGCCACGATAGTCAGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCCCCCAGCACTTCTGACGCAATGAGGCCACGATAGTCAGTGGA  700

seq1  GGCCATGGCTTACAGCACAGACCCCAAGATCAGAATATCAAGAGAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGCTTACAGCACAGACCCCAAGATCAGAATATCAAGAGAGCCAC  750

seq1  TCCTGCTTGTCTCACGAACGAACGCAGAGCCGGAGCACGGCCAGCTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGTCTCACGAACGAACGCAGAGCCGGAGCACGGCCAGCTTACT  800

seq1  CTTGTTACCCTGCGCAATCATTCCCACTGCGGATCTGGCCCAAAGATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACCCTGCGCAATCATTCCCACTGCGGATCTGGCCCAAAGATATC  850

seq1  TTATCTTATTTTAATGCACCGCATCTCAAAACCTCTTTGCCATCAGCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATTTTAATGCACCGCATCTCAAAACCTCTTTGCCATCAGCTGG  900

seq1  TGTCCAGACTCGTGCACACAGCTTTGAGGAGAGAGGCCTGGCATTTCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGACTCGTGCACACAGCTTTGAGGAGAGAGGCCTGGCATTTCAGT  950

seq1  CCTTGAGTGTATCCACTAGGAATGGCTTCACTTGCTATC-TGCCCCACCT  999
      |||||||||||||||||||| |||||||||||||||||| ||||||||  
seq2  CCTTGAGTGTATCCACTAGG-ATGGCTTCACTTGCTATCTTGCCCCACTC  999

seq1  CTCTG-AAAAACGCC--ATATTATCTTATTGTGTTTTATATAT-AGTGGC  1045
       |||| |||||||||  |||||||||  | |||||||  |||| ||||||
seq2  TTCTGAAAAAACGCCCAATATTATCTATTGGTGTTTTTAATATAAGTGGC  1049

seq1  TTCTGGTATTTAGATCCAAATGCATTCT-AAAATG  1079
      |||||||  |||||||||||||||||||  |||||
seq2  TTCTGGTTATTAGATCCAAATGCATTCTCTAAATG  1084