BAC Information

Click to search

BAC

Clone NameB6Ng01-203M08
Chromosome3 (Build37)
Map Location 140,082,445 - 140,219,681
singlet/doubletdoublet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203M08.bB6Ng01-203M08.g
ACCGA023894GA023895
length9591,127
definitionB6Ng01-203M08.b B6Ng01-203M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,082,445 - 140,083,403)(140,218,543 - 140,219,681)
sequence
gaattccaggcttgtcagtgctatacagtgagactgtctccttaaacaaa
attagaaaacaaacaagactagataattttataacctcttttcatttcaa
agaccaaaaaaacaaaacaaaacaaaacaaacaaacaaacaaacaaacca
atacaactagcaatgtacttattaaattttctacatattttgttgctgtt
tttttgtggggtttttcttgggggaattctgtaaaagagcaagcattttg
tagcacaaatcatactaataattgagtacaaagtgccttttttccttctt
tattttcacttcgttattgaactggactaagttgactttttaggaatgcc
agacttatagttgatttcaaactacttgttttctatgtcaataatctcac
atctatatttatatctataacattttagactaagttgtaatcattcagac
tgtctccatgatagaactatcaattattgctttgttttcatttgtttcat
actgtgcattaagaaaaatctcagtattcctggttgatactgctagatat
ggaattgtttgtctttattttcatagacacttttgaagtcactaaaaaga
atccaagtgatgcattcctgtagtccctggtacacaagaagctgaagtag
agcaaagctaacaaggccaaggccatcatgtgctactaccaagactgtac
ctcagacatgaaatgaaacagaaagagagagagagagagagagagagaga
gagagagagagagagagagagagagagagagagagggagagagagaatta
acctagatattagcagaagaaaaaactcattctaaaatttagatttcaaa
aaagttactaggaaccagtaagaccatttctcggggaagaaaggggaaaa
gttggaaaaacccaagtgacgttaaagcttattgaaaagatgactgtcac
aggaagtat

gaattctcttagaagctggacctggccttcttttgagatacttcacacat
ttgagcagccttggagagacaggcttaggactacagctaggaatttagag
tatgatcatcttatgatgactctcagcaattacaatgtaacttttgttac
actaattacatgtttctatatccttgatcaaaacaagcagttcatgtcct
acccacaatgtctacggaagcccttttcctcgcatcctgtcctgcatttg
ttgtcttgttttgaagacatttctctgatgtctaaggagagaacctagca
gccaacccgtgtgactacatgaaagtcaaaagctctgtattataaaaacc
aataaaacccacttagtagtgtgtaaaaggaccctacagagtggaaggaa
aaaagttatacatcagacagaggattttcaattaaccaaaacaatctaaa
caccaaggaaataaatgtggactgaaaataaacatttctcagaaaataaa
cattaatgtctaaaaaatattgcttaaagggaatgctttaaatattttct
acaggaacaaagattatccaaatgatgaaacaaaacttttttcccctcaa
cttctactttatatgcacagtcccatggtcaatatgtcagtgactttggt
tcttccacaataaacttttatgccccagatataaccataaaacccatggc
tttctgctgtctcctcttcccctcgtggtcacgatcttctgacatccaga
gcctttctgcctgtgcctagcgcatcctagtcactgctctctggattttc
ttctctgtcctggccaggagattttattgttgagctgctcttttaagaga
caatttccatgattctttatcctctggaccatccctctgtgtagtaatag
atgttggcattctatgctaataatatgctagttctgctgagtatttctgg
gaaagttccacagatactatgaatttctctccaacttcagccagccattg
atgcagattaatgccttttctttaactaaccattctcagtctacacatca
ttatttcaagtctcaatgcttcctcttcattcaaaacgaggtgtgaaaaa
tataattttctaactcactgtaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140082445_140083403
seq2: B6Ng01-203M08.b_43_1001

seq1  GAATTCCAGGCTTGTCAGTGCTATACAGTGAGACTGTCTCCTTAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTTGTCAGTGCTATACAGTGAGACTGTCTCCTTAAACAAA  50

seq1  ATTAGAAAACAAACAAGACTAGATAATTTTATAACCTCTTTTCATTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAACAAACAAGACTAGATAATTTTATAACCTCTTTTCATTTCAA  100

seq1  AGACCAAAAAAACAAAACAAAACAAAACAAACAAACAAACAAACAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAAAAAACAAAACAAAACAAAACAAACAAACAAACAAACAAACCA  150

seq1  ATACAACTAGCAATGTACTTATTAAATTTTCTACATATTTTGTTGCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTAGCAATGTACTTATTAAATTTTCTACATATTTTGTTGCTGTT  200

seq1  TTTTTGTGGGGTTTTTCTTGGGGGAATTCTGTAAAAGAGCAAGCATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGGGTTTTTCTTGGGGGAATTCTGTAAAAGAGCAAGCATTTTG  250

seq1  TAGCACAAATCATACTAATAATTGAGTACAAAGTGCCTTTTTTCCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAAATCATACTAATAATTGAGTACAAAGTGCCTTTTTTCCTTCTT  300

seq1  TATTTTCACTTCGTTATTGAACTGGACTAAGTTGACTTTTTAGGAATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCACTTCGTTATTGAACTGGACTAAGTTGACTTTTTAGGAATGCC  350

seq1  AGACTTATAGTTGATTTCAAACTACTTGTTTTCTATGTCAATAATCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATAGTTGATTTCAAACTACTTGTTTTCTATGTCAATAATCTCAC  400

seq1  ATCTATATTTATATCTATAACATTTTAGACTAAGTTGTAATCATTCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATTTATATCTATAACATTTTAGACTAAGTTGTAATCATTCAGAC  450

seq1  TGTCTCCATGATAGAACTATCAATTATTGCTTTGTTTTCATTTGTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATGATAGAACTATCAATTATTGCTTTGTTTTCATTTGTTTCAT  500

seq1  ACTGTGCATTAAGAAAAATCTCAGTATTCCTGGTTGATACTGCTAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCATTAAGAAAAATCTCAGTATTCCTGGTTGATACTGCTAGATAT  550

seq1  GGAATTGTTTGTCTTTATTTTCATAGACACTTTTGAAGTCACTAAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTTTGTCTTTATTTTCATAGACACTTTTGAAGTCACTAAAAAGA  600

seq1  ATCCAAGTGATGCATTCCTGTAGTCCCTGGTACACAAGAAGCTGAAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTGATGCATTCCTGTAGTCCCTGGTACACAAGAAGCTGAAGTAG  650

seq1  AGCAAAGCTAACAAGGCCAAGGCCATCATGTGCTACTACCAAGACTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCTAACAAGGCCAAGGCCATCATGTGCTACTACCAAGACTGTAC  700

seq1  CTCAGACATGAAATGAAACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACATGAAATGAAACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA  750

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAATTA  800

seq1  ACCTAGATATTAGCAG-AGAAAAAACTCATTCTAAAATTTAGATTTCAAA  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCTAGATATTAGCAGAAGAAAAAACTCATTCTAAAATTTAGATTTCAAA  850

seq1  AAAGTTACTAGGAAACCAGTAAGACCA-TTCTCGGGGAAGAAAGGGGGAA  898
      |||||||||||| |||||||||||||| ||||||||||||||||||| ||
seq2  AAAGTTACTAGG-AACCAGTAAGACCATTTCTCGGGGAAGAAAGGGGAAA  899

seq1  AGTTGGAAAAACCCAAGTGACTTTAAAGCTTATTGGAAAGATGACATGGC  948
      ||||||||||||||||||||| ||||||||||||| ||||||||| || |
seq2  AGTTGGAAAAACCCAAGTGACGTTAAAGCTTATTGAAAAGATGAC-TGTC  948

seq1  ACAGGAAGAAT  959
      |||||||| ||
seq2  ACAGGAAGTAT  959


seq1: chr3_140218543_140219681
seq2: B6Ng01-203M08.g_62_1188 (reverse)

seq1  TGTATTTATAAGTGATGTTAGAAAATTATATTTTTTCACACTCTGTTTGA  50
      ||||||    ||||| |||||||||||||| ||||||||||   ||||  
seq2  TGTATT--ACAGTGA-GTTAGAAAATTATA-TTTTTCACACCTCGTTTTG  46

seq1  AATGGAAGAAGAAGCATTTGAAGAACTTTGAAATAATTGATGTGTAGACT  100
      ||| ||||| ||||||||    ||   ||||||||| |||||||||||||
seq2  AAT-GAAGAGGAAGCATT----GAGACTTGAAATAA-TGATGTGTAGACT  90

seq1  GAGGATGGTTAGTTAAAGAAAGGGCATTAATCTGCATCAATGGCTGGCTT  150
      ||| ||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GAGAATGGTTAGTTAAAGAAAAGGCATTAATCTGCATCAATGGCTGGC-T  139

seq1  GAAGTTGGAGAGAAATTCATAGTATCTGTGGAAACTTTCCCAGAAATACT  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAGTTGGAGAGAAATTCATAGTATCTGTGG-AACTTTCCCAGAAATACT  188

seq1  CAGCAGAACTAGCATATTATTAGCATAGAATGCCAACATCTATTACTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAACTAGCATATTATTAGCATAGAATGCCAACATCTATTACTACA  238

seq1  CAGAGGGATGGTCCAGAGGATAAAGAATCATGGAAATTGTCTCTTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGATGGTCCAGAGGATAAAGAATCATGGAAATTGTCTCTTAAAAG  288

seq1  AGCAGCTCAACAATAAAATCTCCTGGCCAGGACAGAGAAGAAAATCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCAACAATAAAATCTCCTGGCCAGGACAGAGAAGAAAATCCAGA  338

seq1  GAGCAGTGACTAGGATGCGCTAGGCACAGGCAGAAAGGCTCTGGATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGACTAGGATGCGCTAGGCACAGGCAGAAAGGCTCTGGATGTCA  388

seq1  GAAGATCGTGACCACGAGGGGAAGAGGAGACAGCAGAAAGCCATGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCGTGACCACGAGGGGAAGAGGAGACAGCAGAAAGCCATGGGTTT  438

seq1  TATGGTTATATCTGGGGCATAAAAGTTTATTGTGGAAGAACCAAAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTATATCTGGGGCATAAAAGTTTATTGTGGAAGAACCAAAGTCAC  488

seq1  TGACATATTGACCATGGGACTGTGCATATAAAGTAGAAGTTGAGGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATTGACCATGGGACTGTGCATATAAAGTAGAAGTTGAGGGGAAA  538

seq1  AAAGTTTTGTTTCATCATTTGGATAATCTTTGTTCCTGTAGAAAATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTGTTTCATCATTTGGATAATCTTTGTTCCTGTAGAAAATATTT  588

seq1  AAAGCATTCCCTTTAAGCAATATTTTTTAGACATTAATGTTTATTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTCCCTTTAAGCAATATTTTTTAGACATTAATGTTTATTTTCTG  638

seq1  AGAAATGTTTATTTTCAGTCCACATTTATTTCCTTGGTGTTTAGATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTTATTTTCAGTCCACATTTATTTCCTTGGTGTTTAGATTGTT  688

seq1  TTGGTTAATTGAAAATCCTCTGTCTGATGTATAACTTTTTTCCTTCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATTGAAAATCCTCTGTCTGATGTATAACTTTTTTCCTTCCACT  738

seq1  CTGTAGGGTCCTTTTACACACTACTAAGTGGGTTTTATTGGTTTTTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGTCCTTTTACACACTACTAAGTGGGTTTTATTGGTTTTTATAA  788

seq1  TACAGAGCTTTTGACTTTCATGTAGTCACACGGGTTGGCTGCTAGGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCTTTTGACTTTCATGTAGTCACACGGGTTGGCTGCTAGGTTCT  838

seq1  CTCCTTAGACATCAGAGAAATGTCTTCAAAACAAGACAACAAATGCAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGACATCAGAGAAATGTCTTCAAAACAAGACAACAAATGCAGGA  888

seq1  CAGGATGCGAGGAAAAGGGCTTCCGTAGACATTGTGGGTAGGACATGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCGAGGAAAAGGGCTTCCGTAGACATTGTGGGTAGGACATGAAC  938

seq1  TGCTTGTTTTGATCAAGGATATAGAAACATGTAATTAGTGTAACAAAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTTTGATCAAGGATATAGAAACATGTAATTAGTGTAACAAAAGT  988

seq1  TACATTGTAATTGCTGAGAGTCATCATAAGATGATCATACTCTAAATTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTAATTGCTGAGAGTCATCATAAGATGATCATACTCTAAATTCC  1038

seq1  TAGCTGTAGTCCTAAGCCTGTCTCTCCAAGGCTGCTCAAATGTGTGAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTAGTCCTAAGCCTGTCTCTCCAAGGCTGCTCAAATGTGTGAAGT  1088

seq1  ATCTCAAAAGAAGGCCAGGTCCAGCTTCTAAGAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAAGAAGGCCAGGTCCAGCTTCTAAGAGAATTC  1127


| Home | SequenceCutter | Blast | Download |