BAC Information

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BAC

Clone NameB6Ng01-203N06
Chromosome3 (Build37)
Map Location 43,038,648 - 43,199,938
singlet/doubletdoublet
Overlap geneLOC677788
Upstream geneLOC100039204, LOC100039219
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203N06.bB6Ng01-203N06.g
ACCGA023938GA023939
length5031,119
definitionB6Ng01-203N06.b B6Ng01-203N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,038,648 - 43,039,156)(43,198,817 - 43,199,938)
sequence
acttttggccatcatgttataatctctgagtagtgtttttacataagcac
aaaaattatgaaattttagaatgcttgttacctaagttctgatttccata
tttatcaaaagcatatgaaaaacagtttgaaatatatacaatactataga
cttgtattttctttaaatacttcaagtcttaaaactatttaattagtcaa
gatcatatacactgtttttaaccaattgcatcaactactgtctataattg
tataaaatagaaatgataaataaaataatgcttaaaatgataataacatt
catttttattatagcaggtataaaacaaggacatccactatttctttcct
tttctttccttttctttcctttccttttcttttcttttcttttcttttct
tttcttttcttttcttttcttttcttttctcttctttcctttcctttcct
ttcctttccttcccttccctccttcccttcccttcccttaccttccctta
cct

gaattcaatgctggaaatatgaatcagtatgtaaagtactttctagttaa
atataaagacttggatttgtgtccaccgattagtgtgaaatattaggcaa
agcagtgtgaaccccaaagccaagccataaggaaagggatccaggtggaa
caagggatccaggtggatgataaggactctgtggccaagcagctgatcta
acccaaggacaagctccagtttcagaaagggaggcaccaaacacctaact
actaatatccatgcactaatgcactaatgagtacatgcacatgtgtgcat
gcttgttctcacctacaaacacacatacacacacacatatatatatatat
agagagagacagagagagaaagacagagacagagatagatacaaatacac
cacaaagctgtattttaaagactctacttatatagataaagcaaacatgg
taaaaaaaaaaaaaaaaaaaggagggtgatgtacatgtaactgaactgat
tgaagtcttatcatcatcctcagtcagcaattttatttgagacccttctc
atcaatacgcctgagaagtggtgttgtcttgctgtttgatattgtttgtg
aggtttctcttttacacgtagaaagaccgaagaacagatattttcgtata
tttcaagagccatgtgcttcccttatttttataattgatgtcccacccta
tgctccttgaaactattaactttgtcagctgacatcatacagatgtcctt
cttttgttttctgagggttaacatgaaaattaagcatgtttgattttttt
tatcttatataattttttcaattagtaaattccaggtagtgtttaagttc
taaattttagaatatgtttgcataatatgtagtatcataagtacatactt
atgtatttctgagcttctaatacctcatggaatccctaacttatataaaa
atttttaaagcatctaacattgctgctagtggtccattcctccaatattg
taccttgtcattaaatgtaaatagccattataaaatccatttatagtata
tttcctagaagcaagagattatacaaatatggtgggtacctttggtctgg
ctctgatttgttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_43038648_43039156
seq2: B6Ng01-203N06.b_43_551

seq1  GAATTCACTTTTGGCCATCATGTTATAATCTCTGAGTAGTGTTTTTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTGGCCATCATGTTATAATCTCTGAGTAGTGTTTTTACAT  50

seq1  AAGCACAAAAATTATGAAATTTTAGAATGCTTGTTACCTAAGTTCTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAAAATTATGAAATTTTAGAATGCTTGTTACCTAAGTTCTGATT  100

seq1  TCCATATTTATCAAAAGCATATGAAAAACAGTTTGAAATATATACAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTATCAAAAGCATATGAAAAACAGTTTGAAATATATACAATAC  150

seq1  TATAGACTTGTATTTTCTTTAAATACTTCAAGTCTTAAAACTATTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTTGTATTTTCTTTAAATACTTCAAGTCTTAAAACTATTTAATT  200

seq1  AGTCAAGATCATATACACTGTTTTTAACCAATTGCATCAACTACTGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGATCATATACACTGTTTTTAACCAATTGCATCAACTACTGTCTA  250

seq1  TAATTGTATAAAATAGAAATGATAAATAAAATAATGCTTAAAATGATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATAAAATAGAAATGATAAATAAAATAATGCTTAAAATGATAAT  300

seq1  AACATTCATTTTTATTATAGCAGGTATAAAACAAGGACATCCACTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCATTTTTATTATAGCAGGTATAAAACAAGGACATCCACTATTTC  350

seq1  TTTCCTTTTCTTTCCTTTTCTTTCCTTTCCTTTTCTTTTCTTTTCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTCTTTCCTTTTCTTTCCTTTCCTTTTCTTTTCTTTTCTTTTC  400

seq1  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTTTCCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTCTTCTTTCCTTTCC  450

seq1  TTTCCTTTCCTTTCCTTCCCTTCCCTCCTTCCCTTCCCTTCCCTTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTCCTTTCCTTTCCTTCCCTTCCCTCCTTCCCTTCCCTTCCCTTACCTT  500

seq1  CCCTTCCCT  509
      ||||| |||
seq2  CCCTTACCT  509


seq1: chr3_43198817_43199938
seq2: B6Ng01-203N06.g_66_1184 (reverse)

seq1  AAAAAAAAACAAAAAACAAAAACAAAACACAAAAAGTACCCCACCATATT  50
      ||||||||||  ||| || |  |   | || ||| ||| |||||||||||
seq2  AAAAAAAAAC--AAATCAGAGCC---AGACCAAAGGTA-CCCACCATATT  44

seq1  TGGTATAATCTCTTTGCTTTCTAAGAAATTATACTATAAATTGGGATTTT  100
      | |||||||||| |||| ||||| |||| ||||||||||||  |||||||
seq2  T-GTATAATCTC-TTGC-TTCTAGGAAA-TATACTATAAAT--GGATTTT  88

seq1  TATATGGCTTATTTACATTAAATGACAA-GTACAATATTG--AGAATGGA  147
         ||||| |||||||||| |||||||| |||||||||||   |||||||
seq2  ATAATGGC-TATTTACATTTAATGACAAGGTACAATATTGGAGGAATGGA  137

seq1  CCACTAGCAGCAATGTTAGATGCTTTAAAA--TTTTATATAAGTTAGGGA  195
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CCACTAGCAGCAATGTTAGATGCTTTAAAAATTTTTATATAAGTTAGGGA  187

seq1  TTCCATGAGGTATTAG-AGCTCAGAAATACAT-AGTATGTACTTATGATA  243
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TTCCATGAGGTATTAGAAGCTCAGAAATACATAAGTATGTACTTATGATA  237

seq1  CTACATATTATGCAAACATATTCT-AAATTTAGAACTT-AACACTACCTG  291
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  CTACATATTATGCAAACATATTCTAAAATTTAGAACTTAAACACTACCTG  287

seq1  GAATTTACTAATTG-AAAAATTATATAAGATAAAAAAAATCAAACATGCT  340
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTTACTAATTGAAAAAATTATATAAGATAAAAAAAATCAAACATGCT  337

seq1  TAATTTTCATGTTAACCCTCAGAAAACAAAAGAAGGACATCTGTATGATG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCATGTTAACCCTCAGAAAACAAAAGAAGGACATCTGTATGATG  387

seq1  TCAGCTGACAAAGTTAATAGTTTCAAGGAGCATAGGGTGGGACATCAATT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGACAAAGTTAATAGTTTCAAGGAGCATAGGGTGGGACATCAATT  437

seq1  ATAAAAATAAGGGAAGCACATGGCTCTTGAAATATACGAAAATATCTGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAAGGGAAGCACATGGCTCTTGAAATATACGAAAATATCTGTT  487

seq1  CTTCGGTCTTTCTACGTGTAAAAGAGAAACCTCACAAACAATATCAAACA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTCTTTCTACGTGTAAAAGAGAAACCTCACAAACAATATCAAACA  537

seq1  GCAAGACAACACCACTTCTCAGGCGTATTGATGAGAAGGGTCTCAAATAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACAACACCACTTCTCAGGCGTATTGATGAGAAGGGTCTCAAATAA  587

seq1  AATTGCTGACTGAGGATGATGATAAGACTTCAATCAGTTCAGTTACATGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGACTGAGGATGATGATAAGACTTCAATCAGTTCAGTTACATGT  637

seq1  ACATCACCCTCCTTTTTTTTTTTTTTTTTTTACCATGTTTGCTTTATCTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCCTCCTTTTTTTTTTTTTTTTTTTACCATGTTTGCTTTATCTA  687

seq1  TATAAGTAGAGTCTTTAAAATACAGCTTTGTGGTGTATTTGTATCTATCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTAGAGTCTTTAAAATACAGCTTTGTGGTGTATTTGTATCTATCT  737

seq1  CTGTCTCTGTCTTTCTCTCTCTGTCTCTCTCTATATATATATATATGTGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTCTTTCTCTCTCTGTCTCTCTCTATATATATATATATGTGT  787

seq1  GTGTGTATGTGTGTTTGTAGGTGAGAACAAGCATGCACACATGTGCATGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGTTTGTAGGTGAGAACAAGCATGCACACATGTGCATGT  837

seq1  ACTCATTAGTGCATTAGTGCATGGATATTAGTAGTTAGGTGTTTGGTGCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTAGTGCATTAGTGCATGGATATTAGTAGTTAGGTGTTTGGTGCC  887

seq1  TCCCTTTCTGAAACTGGAGCTTGTCCTTGGGTTAGATCAGCTGCTTGGCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTGAAACTGGAGCTTGTCCTTGGGTTAGATCAGCTGCTTGGCC  937

seq1  ACAGAGTCCTTATCATCCACCTGGATCCCTTGTTCCACCTGGATCCCTTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCCTTATCATCCACCTGGATCCCTTGTTCCACCTGGATCCCTTT  987

seq1  CCTTATGGCTTGGCTTTGGGGTTCACACTGCTTTGCCTAATATTTCACAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGGCTTGGCTTTGGGGTTCACACTGCTTTGCCTAATATTTCACAC  1037

seq1  TAATCGGTGGACACAAATCCAAGTCTTTATATTTAACTAGAAAGTACTTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGGTGGACACAAATCCAAGTCTTTATATTTAACTAGAAAGTACTTT  1087

seq1  ACATACTGATTCATATTTCCAGCATTGAATTC  1122
      ||||||||||||||||||||||||||||||||
seq2  ACATACTGATTCATATTTCCAGCATTGAATTC  1119


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