BAC Information

Click to search

BAC

Clone NameB6Ng01-204E19
Chromosome3 (Build37)
Map Location 81,632,780 - 81,633,901
singlet/doubletsinglet
Overlap genenone
Upstream geneGlrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204E19.bB6Ng01-204E19.g
ACCGA024280GA024281
length1,1301,210
definitionB6Ng01-204E19.b B6Ng01-204E19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagattcatgagcaggttacactgcttttccactaattaggtca
ttaggagcaaacttgactatttctgaagtgcaccttcctccccaactatt
ctcattgtgaagaaagggtttctgtcttccctgaacaagcattcaaagcc
agcttctcaccagcaagtgcccattgctctcaaatggccctgtggagcag
tctcacaactgttctgctgaaagacttttgtcactgggtaacagcaaagc
aggtcagatgtgtagcaccctgggctgtttatacctcctgtcatcctgca
gtatctctcttagacagaaggagctctgcacaggaccatgacactttctt
cttttttttttttttttagatttatttatttattatatgtaagtacattg
tagctgtcttcagacattccagaagagggagtcagatctcgttacggatg
gttgtgagccaccatgtggttgctgggatttgaactttggacctttggaa
gagcagtcgggtgctcttacccactgagccatctcaccagccccgacact
ttcttctttagtgtaacctaggaaggataaacctgtctgctctagtttag
gacctagatgaagaaatcactgccattacatagtctacaacaatggagaa
ggcatgagtactatcccatagtgaatcctatagcctagaaaaaagtattt
ctgttttctatctgagatgatggatgctagaatgtagactcctgcctcac
aaaatggattcctattaagtttaggcttcatattatgttttcatatcatt
tcttagttctatttgtgtaaccccctcttaagggaatccctgtaatttca
aaactatttaaaagagtaaactgtaggttcagtattatttttgctgtgtt
atcccagcaagaaattctggatgaagatatttttcaaaactaatagaata
gatgccatcttggggaagatttgattgaatctaatgtttaaggcactgca
gatatgatagctcattctctgccttggatattcttactgggaatgaaaaa
atatggcacaatgggaacaaggagcttctttaaatattccagcaggacat
tcttgccttctgcattctcttctatcaagc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttatacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggattccaccccataat
cagctttccaaatgctgacaccattgcatacactagcaagattttactga
aaggacccagatgtagctgtcttcttgtgagactatgccggggcctaacc
aacacagaagtggaatgctccacagtcagctaattgattggattcacagg
tgcttcccaatgggaggagtctagagaaagtacccaggagcttaagggat
ccttcaactcctattagttggaaacatacattatggaacttaaccagtta
cccctggagtcccttgaacttctaagcttgcaatatgttattcaaaaaga
atgtccctagttcggtcaattcaccttgagaggatgctctattggaaccg
ctaacttgtatgtccccagatcatggttatacgtctcatggttccataaa
aagttgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81632780_81633901
seq2: B6Ng01-204E19.b_43_1172 (reverse)

seq1  GCTTGAT--GAGAG-ATGCAGAA-GCA--GATGTCCTGCCTGGATATTTA  44
      |||||||   |||| |||||||| |||   |||||||||  | |||||||
seq2  GCTTGATAGAAGAGAATGCAGAAGGCAAGAATGTCCTGCTGGAATATTTA  50

seq1  AGGAAGCTCCTTGTTCC--ATGTGCCCTTATTTTTCA-TCCCAGTAAG-A  90
      | |||||||||||||||   |||||| |  ||||||| |||||||||| |
seq2  AAGAAGCTCCTTGTTCCCATTGTGCCATATTTTTTCATTCCCAGTAAGAA  100

seq1  TATCCAAGGCAGAG-ATGAGCTATCATTATCTGCAGTGCCTTAAACATTA  139
      |||||||||||||| ||||||||||| |||||||||||||||||||||| 
seq2  TATCCAAGGCAGAGAATGAGCTATCA-TATCTGCAGTGCCTTAAACATT-  148

seq1  AGATTCAATCAAATCTT-CCCAAGATGGCATCTATTTCTATTAGTTTTTG  188
      ||||||||||||||||| |||||||||||||||| ||||||||| |||||
seq2  AGATTCAATCAAATCTTCCCCAAGATGGCATCTA-TTCTATTAG-TTTTG  196

seq1  AAAAATATCTTCATCCAGAATTTCTTGCTGGGATAACACAGCAAAAATAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCTTCATCCAGAATTTCTTGCTGGGATAACACAGCAAAAATAA  246

seq1  TACTGAACCTACAGTTTACTCTTTTAAATAGTTTTGAAATTACAGGGATT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACCTACAGTTTACTCTTTTAAATAGTTTTGAAATTACAGGGATT  296

seq1  CCCTTAAGAGGGGGTTACACAAATAGAACTAAGAAATGATATGAAAACAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAGAGGGGGTTACACAAATAGAACTAAGAAATGATATGAAAACAT  346

seq1  AATATGAAGCCTAAACTTAATAGGAATCCATTTTGTGAGGCAGGAGTCTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGCCTAAACTTAATAGGAATCCATTTTGTGAGGCAGGAGTCTA  396

seq1  CATTCTAGCATCCATCATCTCAGATAGAAAACAGAAATACTTTTTTCTAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGCATCCATCATCTCAGATAGAAAACAGAAATACTTTTTTCTAG  446

seq1  GCTATAGGATTCACTATGGGATAGTACTCATGCCTTCTCCATTGTTGTAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGGATTCACTATGGGATAGTACTCATGCCTTCTCCATTGTTGTAG  496

seq1  ACTATGTAATGGCAGTGATTTCTTCATCTAGGTCCTAAACTAGAGCAGAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAATGGCAGTGATTTCTTCATCTAGGTCCTAAACTAGAGCAGAC  546

seq1  AGGTTTATCCTTCCTAGGTTACACTAAAGAAGAAAGTGTCGGGGCTGGTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATCCTTCCTAGGTTACACTAAAGAAGAAAGTGTCGGGGCTGGTG  596

seq1  AGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAAAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAAAG  646

seq1  TTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATC  696

seq1  TGACTCCCTCTTCTGGAATGTCTGAAGACAGCTACAATGTACTTACATAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTCTTCTGGAATGTCTGAAGACAGCTACAATGTACTTACATAT  746

seq1  AATAAATAAATAAATCTAAAAAAAAAAAAAAAAGAAGAAAGTGTCATGGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATCTAAAAAAAAAAAAAAAAGAAGAAAGTGTCATGGT  796

seq1  CCTGTGCAGAGCTCCTTCTGTCTAAGAGAGATACTGCAGGATGACAGGAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCAGAGCTCCTTCTGTCTAAGAGAGATACTGCAGGATGACAGGAG  846

seq1  GTATAAACAGCCCAGGGTGCTACACATCTGACCTGCTTTGCTGTTACCCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACAGCCCAGGGTGCTACACATCTGACCTGCTTTGCTGTTACCCA  896

seq1  GTGACAAAAGTCTTTCAGCAGAACAGTTGTGAGACTGCTCCACAGGGCCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAAGTCTTTCAGCAGAACAGTTGTGAGACTGCTCCACAGGGCCA  946

seq1  TTTGAGAGCAATGGGCACTTGCTGGTGAGAAGCTGGCTTTGAATGCTTGT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGCAATGGGCACTTGCTGGTGAGAAGCTGGCTTTGAATGCTTGT  996

seq1  TCAGGGAAGACAGAAACCCTTTCTTCACAATGAGAATAGTTGGGGAGGAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAGACAGAAACCCTTTCTTCACAATGAGAATAGTTGGGGAGGAA  1046

seq1  GGTGCACTTCAGAAATAGTCAAGTTTGCTCCTAATGACCTAATTAGTGGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTTCAGAAATAGTCAAGTTTGCTCCTAATGACCTAATTAGTGGA  1096

seq1  AAAGCAGTGTAACCTGCTCATGAATCTGGAATTC  1122
      ||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTGTAACCTGCTCATGAATCTGGAATTC  1130