BAC Information

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BAC

Clone NameB6Ng01-204G15
Chromosome3 (Build37)5 (Build37)
Map Location 63,117,154 - 63,118,272132,407,166 - 132,407,400
singlet/doubletsingletsinglet
Overlap geneMme
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204G15.bB6Ng01-204G15.g
ACCGA024368GA024369
length1,125266
definitionB6Ng01-204G15.b B6Ng01-204G15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,117,154 - 63,118,272)(132,407,166 - 132,407,400)
sequence
gaattccacaccactagactaggcaaaaagagactgcatctccacccagg
ccagggaaggcttacatatacccaggctctgcactcagatccctgaatgc
cagtgatccgagtggagttcctgagggacaggacatcagtcctcttcatc
tccttatacattttatgttttgctatttttaattcaatttttaaaatttc
tatcttactttatccttccccgtgtgtacgggtcggatatacaattttag
tctatttctccttctttcgcttttatggtctccttccttcatatctaatt
ttgtaggccagctttgtcctgccttgatcctgcactgtgttttcttccct
tctgttttgtattcttgagaatacaagctctctcactagtataggtgggc
ttggggttgtggcctctctgccttggtgtcctactgcaaggaatgtttcc
gcttgtcagatgtgaacttgccactttctcttcttcctctttctttggct
ggagccgccccacttctccctgtccttactgtttcccccctttacttact
tctgtctcctctatttttctttactgcccaaaagccaatttgtaatctca
ctatgcttatttatgaaatgagtgtcttggtatgtactgtgctaagtgtt
cctttgtttgcccaaaacttttgaggttaaaggaagtgattgatttcaat
tgattactacagggctatccatcagttatggtttgcttctgggtttagta
ttctattctcatggattagaattaatctaattcccagaatttactcatga
agatggctatattaccagaagagttacagaggtcagtgtcgcccccatca
aaatttaaggttagtcatcacagaaatgggaaaaaatccaaaaactttga
acagctgaagcaatcctgagcaaaaatgaacagtgctagaggttttacag
tgtcacaaaacataactcatttttataacagtagtgacagtcacaaacca
gcatagcactagcacagggacaggacatactgactattgaattgggatag
accacctgggcttacaatttcaccacagcctaccattccccagctgttaa
caatggtgcctaaaatatgcattgg
ccacaaaaaccttaagataaacaatcacaacatatatattgcatgtgtgt
gtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtatgtgtagaagacctagctcagatctttacaaggtttgtgtttgctat
ttcagtctctctgatcccctatgagccgtgcttaattgattttgtgggcc
ttgttctcctggtatcctcaaccccttggtttttacaatccttccttccc
ttctttcctcactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63117154_63118272
seq2: B6Ng01-204G15.b_43_1167 (reverse)

seq1  CCAATGCATATTTTGGGCACCTTTGTTAACAGCTGGGGAATTGTA-GCTG  49
      |||||||||||||| |||||| ||||||||||||||||||| ||| ||||
seq2  CCAATGCATATTTTAGGCACCATTGTTAACAGCTGGGGAATGGTAGGCTG  50

seq1  T-GTGAATTTGTA--GCCAGGTGGTCTATCCC-ATTCAATTAGTCTGTAT  95
      | ||||| |||||   |||||||||||||||| |||||| ||||| ||||
seq2  TGGTGAAATTGTAAGCCCAGGTGGTCTATCCCAATTCAA-TAGTCAGTAT  99

seq1  GT-CTGTCCCTGTGCTAGTGCTATGCTGGTTTTGTGACTGTCACT-CTGT  143
      || |||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  GTCCTGTCCCTGTGCTAGTGCTATGCTGG-TTTGTGACTGTCACTACTGT  148

seq1  TAT-AAAATGAGTTTATGTTTTTGTGACACTGTAAAACCTCTAGCACTGT  192
      ||| |||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TATAAAAATGAG-TTATG-TTTTGTGACACTGTAAAACCTCTAGCACTGT  196

seq1  TCATTTTTGCTCAGGATTGCTTCAGCTGTTCAAAGTTTTTGGATTTTTTT  242
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCATTTTTGCTCAGGATTGCTTCAGCTGTTCAAAGTTTTTGGA-TTTTTT  245

seq1  CCCATTTCTGTGATGACTAACCTT-AATTTTGATGGGGGCGACACTGA-C  290
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  CCCATTTCTGTGATGACTAACCTTAAATTTTGATGGGGGCGACACTGACC  295

seq1  TCTGTAACTCTTCTGGTAATATAGCCATCTTCATGAGTAAATTCTGGGAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACTCTTCTGGTAATATAGCCATCTTCATGAGTAAATTCTGGGAA  345

seq1  TTAGATTAATTCTAATCCATGAGAATAGAATACTAAACCCAGAAGC-AAC  389
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAGATTAATTCTAATCCATGAGAATAGAATACTAAACCCAGAAGCAAAC  395

seq1  CATAACTGATGGATAGCCCTGTAGTAATCAATTGAAATCAATCACTTCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGATGGATAGCCCTGTAGTAATCAATTGAAATCAATCACTTCCT  445

seq1  TTAACCTCAAAAGTTTTGGGCAAACAAAGGAACACTTAGCACAGTACATA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCAAAAGTTTTGGGCAAACAAAGGAACACTTAGCACAGTACATA  495

seq1  CCAAGACACTCATTTCATAAATAAGCATAGTGAGATTACAAATTGGCTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACACTCATTTCATAAATAAGCATAGTGAGATTACAAATTGGCTTT  545

seq1  TGGGCAGTAAAGAAAAATAGAGGAGACAGAAGTAAGTAAAGGGGGGAAAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTAAAGAAAAATAGAGGAGACAGAAGTAAGTAAAGGGGGGAAAC  595

seq1  AGTAAGGACAGGGAGAAGTGGGGCGGCTCCAGCCAAAGAAAGAGGAAGAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGACAGGGAGAAGTGGGGCGGCTCCAGCCAAAGAAAGAGGAAGAA  645

seq1  GAGAAAGTGGCAAGTTCACATCTGACAAGCGGAAACATTCCTTGCAGTAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGGCAAGTTCACATCTGACAAGCGGAAACATTCCTTGCAGTAG  695

seq1  GACACCAAGGCAGAGAGGCCACAACCCCAAGCCCACCTATACTAGTGAGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAAGGCAGAGAGGCCACAACCCCAAGCCCACCTATACTAGTGAGA  745

seq1  GAGCTTGTATTCTCAAGAATACAAAACAGAAGGGAAGAAAACACAGTGCA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTATTCTCAAGAATACAAAACAGAAGGGAAGAAAACACAGTGCA  795

seq1  GGATCAAGGCAGGACAAAGCTGGCCTACAAAATTAGATATGAAGGAAGGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGGCAGGACAAAGCTGGCCTACAAAATTAGATATGAAGGAAGGA  845

seq1  GACCATAAAAGCGAAAGAAGGAGAAATAGACTAAAATTGTATATCCGACC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAAAAGCGAAAGAAGGAGAAATAGACTAAAATTGTATATCCGACC  895

seq1  CGTACACACGGGGAAGGATAAAGTAAGATAGAAATTTTAAAAATTGAATT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACACACGGGGAAGGATAAAGTAAGATAGAAATTTTAAAAATTGAATT  945

seq1  AAAAATAGCAAAACATAAAATGTATAAGGAGATGAAGAGGACTGATGTCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGCAAAACATAAAATGTATAAGGAGATGAAGAGGACTGATGTCC  995

seq1  TGTCCCTCAGGAACTCCACTCGGATCACTGGCATTCAGGGATCTGAGTGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCAGGAACTCCACTCGGATCACTGGCATTCAGGGATCTGAGTGC  1045

seq1  AGAGCCTGGGTATATGTAAGCCTTCCCTGGCCTGGGTGGAGATGCAGTCT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGGGTATATGTAAGCCTTCCCTGGCCTGGGTGGAGATGCAGTCT  1095

seq1  CTTTTTGCCTAGTCTAGTGGTGTGGAATTC  1119
      ||||||||||||||||||||||||||||||
seq2  CTTTTTGCCTAGTCTAGTGGTGTGGAATTC  1125

seq1: chr5_132407166_132407400
seq2: B6Ng01-204G15.g_124_332 (reverse)

seq1  GAGGAAAGAAGGGAAGGAAGG--TGGAAGAGACAA-----AGAAGAAATC  43
      |||||||||||||||||||||  || || |  |||      || || | |
seq2  GAGGAAAGAAGGGAAGGAAGGATTGTAAAAACCAAGGGGTTGAGGATACC  50

seq1  A-ATCAACAA----CACCAATGCATGCATGCATACATACATACATACATA  88
      |    |||||    ||| ||  ||   | |||    | ||||     || 
seq2  AGGAGAACAAGGCCCACAAAATCAATTAAGCACGGCT-CATA-GGGGAT-  97

seq1  CATACATACAATGAAACA--AAACAGAGAAAAACTAAAGGTAGATGGTGC  136
      || | | ||  ||||| |  ||||| | |     ||||| |         
seq2  CAGAGAGAC--TGAAATAGCAAACACAAACCTTGTAAAGAT---------  136

seq1  CTGAGGAATGATAACCAAGATTAATCTTTGCCTTCCATATGTTCACGTAC  186
      |||||                    ||  | ||||      | ||| |||
seq2  CTGAG--------------------CTAGGTCTTC------TACACATAC  160

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACA  235
      ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACACACACACACACACACACACACACACACACACACACACATACACA  209