BAC Information

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BAC

Clone NameB6Ng01-204J11
Chromosome3 (Build37)
Map Location 48,397,077 - 48,488,508
singlet/doubletdoublet
Overlap gene1700018B24Rik
Upstream geneLOC666202, LOC666208
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204J11.bB6Ng01-204J11.g
ACCGA024492GA024493
length9791,076
definitionB6Ng01-204J11.b B6Ng01-204J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,487,936 - 48,488,508)(48,397,077 - 48,398,141)
sequence
gaattcattttcaaaagaggtaaagtaaactacgatctcctgggctttgg
cttccagaactcacattctcagtgaatgatatttttccctcccggtgtgc
tacctgatcgggaggtgtacaaaataagagatgaagcaaatttcccatga
gtataatgtgaaatcacatcagagaataatgttgtatttttgtttaaaaa
ctaaatcaaatgcttgtacatgaactcccacatagggtatgttaagataa
catgtgttctagtatcaagtttttccctgcattttctacatggcttttgt
ctttagtcactacttgcagtctagaaggaagaattaacttctaagattca
tttttcatccatgaaataatgagtatccagaaatcagtagcatatcatgt
ccactaatattttcaagaagtaagtaggctggaaattggctgctgctgtt
gtgtatgtaagggggcacctctaggacaagctagagagagagacctggga
tggggaacgcttcaagaagtctatagggtgagactcctagcagtggggtt
atagaactggaagtggccacttcctgtagctaggtaggagcaccaatgga
tgaataaggacaccaatcacccacaaaacttttgacccaaaatttgtgtc
tacaagaaatgcagggacaaagatggagcaaaggctgagggaatagcaat
cacgtgattggttcaacttgagcccatcccgtgaagaaacactaaatcct
gacactattaatgttactctgttatacttgcaaacagcaatctagcatga
ctctcctctaagagtctccatccagcttctgactgaaagagatgcagaaa
cacactgccaaacatcagatgtagctcactggggttttgcggaaagagtt
tgggggaagtacagaggggattgaggaggaaaatagaagttcccacctgg
aagaaaaatagagtcttggatccttaagg
gaattccttaaagatcattccctaaggccagaaaggaaaaaaaaccttca
aagaataattcagagtctgttggcaaagagtattagaccagagaatttgt
tgtgaccagtgcttagaacgggaagagacaaaagcaactgacagaagtca
tgattcagagaaaaggggtttctaatagtcaactatatttttatacctaa
ctcaagagccacattggctggtcacccacatctctataaacccaacttat
aaaaccccctcacagacaggcttggaagtttgtatgttacatagttttag
atcttgccaccttggcaatcaatactgaccaatacagcaccagacagata
gatgtgtggaggtgattgaaaataaggagagatgaaaggtgtattgctgg
ctgaagttttcactgctagtgcttgaagtaagagaactgagagaataaag
gcagaaagtaaataaaatatgcagatgagcattaaacagtatagaatgcc
agagatggatgctcaagtggagctaatcttgcttgacagtttaagctaaa
tagcaattgaataaataataagcataataccaatgttgttggctttgaca
ctacaaattgacaagattttaaaagattacctttattgtcagtattatta
ttctcaagtgattgtaggtagaaaagactaattttaagcaatcaatttcc
tagatacatctcctgggaaaatttttcaacaagctcacttcagataagat
gcattctctctaaaatgcagtataaatcatgaagtagtgagtgtggagta
tctccaatcagaacttaaaacaatgtaaaaccattctggattatataaag
ggtcaatttcatcttcttgcccaaagactaaattaactttactttaattg
ccagttgttgtacatccagtttctctgttatagtgaccccataattcaat
actgggaaagcattctactaaaggctcggctcttaaggattcctttaggc
attcttccacttcaatcacctgggagccatttacttctgatggcattaat
gagctcttctatctttgagcgtcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48487936_48488508
seq2: B6Ng01-204J11.b_50_622 (reverse)

seq1  GAAGTGGCCACTTCCAGTTCTATAACCCCACTGCTAGGAGTCTCACCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCCACTTCCAGTTCTATAACCCCACTGCTAGGAGTCTCACCCTA  50

seq1  TAGACTTCTTGAAGCGTTCCCCATCCCAGGTCTCTCTCTCTAGCTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTCTTGAAGCGTTCCCCATCCCAGGTCTCTCTCTCTAGCTTGTCC  100

seq1  TAGAGGTGCCCCCTTACATACACAACAGCAGCAGCCAATTTCCAGCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGCCCCCTTACATACACAACAGCAGCAGCCAATTTCCAGCCTAC  150

seq1  TTACTTCTTGAAAATATTAGTGGACATGATATGCTACTGATTTCTGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTTGAAAATATTAGTGGACATGATATGCTACTGATTTCTGGATA  200

seq1  CTCATTATTTCATGGATGAAAAATGAATCTTAGAAGTTAATTCTTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTTCATGGATGAAAAATGAATCTTAGAAGTTAATTCTTCCTTC  250

seq1  TAGACTGCAAGTAGTGACTAAAGACAAAAGCCATGTAGAAAATGCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGCAAGTAGTGACTAAAGACAAAAGCCATGTAGAAAATGCAGGGA  300

seq1  AAAACTTGATACTAGAACACATGTTATCTTAACATACCCTATGTGGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGATACTAGAACACATGTTATCTTAACATACCCTATGTGGGAGT  350

seq1  TCATGTACAAGCATTTGATTTAGTTTTTAAACAAAAATACAACATTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTACAAGCATTTGATTTAGTTTTTAAACAAAAATACAACATTATTC  400

seq1  TCTGATGTGATTTCACATTATACTCATGGGAAATTTGCTTCATCTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTGATTTCACATTATACTCATGGGAAATTTGCTTCATCTCTTAT  450

seq1  TTTGTACACCTCCCGATCAGGTAGCACACCGGGAGGGAAAAATATCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACACCTCCCGATCAGGTAGCACACCGGGAGGGAAAAATATCATTC  500

seq1  ACTGAGAATGTGAGTTCTGGAAGCCAAAGCCCAGGAGATCGTAGTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAATGTGAGTTCTGGAAGCCAAAGCCCAGGAGATCGTAGTTTACT  550

seq1  TTACCTCTTTTGAAAATGAATTC  573
      |||||||||||||||||||||||
seq2  TTACCTCTTTTGAAAATGAATTC  573

seq1: chr3_48397077_48398141
seq2: B6Ng01-204J11.g_71_1146

seq1  GAATTCCTTAAAGATCATTCCCTAAGGCCAGAAAGGAAAAAAAACCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGATCATTCCCTAAGGCCAGAAAGGAAAAAAAACCTTCA  50

seq1  AAGAATAATTCAGAGTCTGTTGGCAAAGAGTATTAGACCAGAGAATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATTCAGAGTCTGTTGGCAAAGAGTATTAGACCAGAGAATTTGT  100

seq1  TGTGACCAGTGCTTAGAACGGGAAGAGACAAAAGCAACTGACAGAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAGTGCTTAGAACGGGAAGAGACAAAAGCAACTGACAGAAGTCA  150

seq1  TGATTCAGAGAAAAGGGGTTTCTAATAGTCAACTATATTTTTATACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGAGAAAAGGGGTTTCTAATAGTCAACTATATTTTTATACCTAA  200

seq1  CTCAAGAGCCACATTGGCTGGTCACCCACATCTCTATAAACCCAACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGCCACATTGGCTGGTCACCCACATCTCTATAAACCCAACTTAT  250

seq1  AAAACCCCCTCACAGACAGGCTTGGAAGTTTGTATGTTACATAGTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCCTCACAGACAGGCTTGGAAGTTTGTATGTTACATAGTTTTAG  300

seq1  ATCTTGCCACCTTGGCAATCAATACTGACCAATACAGCACCAGACAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCACCTTGGCAATCAATACTGACCAATACAGCACCAGACAGATA  350

seq1  GATGTGTGGAGGTGATTGAAAATAAGGAGAGATGAAAGGTGTATTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGGAGGTGATTGAAAATAAGGAGAGATGAAAGGTGTATTGCTGG  400

seq1  CTGAAGTTTTCACTGCTAGTGCTTGAAGTAAGAGAACTGAGAGAATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTTTCACTGCTAGTGCTTGAAGTAAGAGAACTGAGAGAATAAAG  450

seq1  GCAGAAAGTAAATAAAATATGCAGATGAGCATTAAACAGTATAGAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGTAAATAAAATATGCAGATGAGCATTAAACAGTATAGAATGCC  500

seq1  AGAGATGGATGCTCAAGTGGAGCTAATCTTGCTTGACAGTTTAAGCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGATGCTCAAGTGGAGCTAATCTTGCTTGACAGTTTAAGCTAAA  550

seq1  TAGCAATTGAATAAATAATAAGCATAATACCAATGTTGTTGGCTTTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTGAATAAATAATAAGCATAATACCAATGTTGTTGGCTTTGACA  600

seq1  CTACAAATTGACAAGATTTTAAAAGATTACCTTTATTGTCAGTATTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATTGACAAGATTTTAAAAGATTACCTTTATTGTCAGTATTATTA  650

seq1  TTCTCAAGTGATTGTAGGTAGAAAAGACTAATTTTAAGCAATCAATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTGATTGTAGGTAGAAAAGACTAATTTTAAGCAATCAATTTCC  700

seq1  TAGATACATCTCCTGGGAAAATTTTTCAACAAGCTCACTTCAGATAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACATCTCCTGGGAAAATTTTTCAACAAGCTCACTTCAGATAAGAT  750

seq1  GCATTCTCTCTAAAATGCAGTATAAATCATGAAGTAGTGAGTGTGGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCTCTAAAATGCAGTATAAATCATGAAGTAGTGAGTGTGGAGTA  800

seq1  TCTCCAATCAGAACTTAAAACAATGTAAAACCATTCTGGATTATATAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAATCAGAACTTAAAACAATGTAAAACCATTCTGGATTATATAAAG  850

seq1  GGTCAATTTCATCTTCTTGCCCAAAGACTAAATTAAC-TTAC-TTAATTG  898
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  GGTCAATTTCATCTTCTTGCCCAAAGACTAAATTAACTTTACTTTAATTG  900

seq1  CCAGTTGTTGTACATCCAGTTTCTCTTGTTATAGTGACCCCATAA-TCAA  947
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  CCAGTTGTTGTACATCCAGTTTCTC-TGTTATAGTGACCCCATAATTCAA  949

seq1  TACT-GGAAAGCA-TCTACT-AAGGCTCGGCTC-TAAGGATTCC-TTAGG  992
      |||| |||||||| |||||| |||||||||||| |||||||||| |||||
seq2  TACTGGGAAAGCATTCTACTAAAGGCTCGGCTCTTAAGGATTCCTTTAGG  999

seq1  CATTCTTCCACTCAAATCACCT-GGAGCCATTTAC-TCTGAT-GCA-TAA  1038
      ||||||||||||  |||||||| |||||||||||| |||||| ||| |||
seq2  CATTCTTCCACTTCAATCACCTGGGAGCCATTTACTTCTGATGGCATTAA  1049

seq1  GGAGCTC-TCTATCTTTGAGCGTTCATA  1065
       |||||| |||||||||||||| |||||
seq2  TGAGCTCTTCTATCTTTGAGCG-TCATA  1076