BAC Information

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BAC

Clone NameB6Ng01-204K03
Chromosome3 (Build37)
Map Location 99,949,640 - 100,137,132
singlet/doubletdoublet
Overlap geneWdr3, Gdap2
Upstream geneWars2, Tbx15, M6pr-ps, Spag17, LOC623045
Downstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204K03.bB6Ng01-204K03.g
ACCGA024524GA024525
length1,1261,087
definitionB6Ng01-204K03.b B6Ng01-204K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,949,640 - 99,950,756)(100,136,053 - 100,137,132)
sequence
gaattcatgtttgtctacaaaatacaatctgttgcacatggagctaaata
taaaattatagtactaaacacatatctggactgcttgctaagtgagattt
cctgtgtccactatggagaccctacgcatacttgccaagaaccctgaagc
ccaattaagaacatcaggctacccaaaacctacccctcagagtaggccta
aacagactatctgggataactgtttcacaggttatcctgaggcccaagac
agtcctgagcaataactcgcagcagcctgtactgaacaacactttcaaag
ctgcttgttacgacgggatagagatttctatctatagatcttcagaatat
gaactagcatatttatttagttttaaataaaactgatgaaccctgcaaca
ctattagtttctcaagcacactcagtgttttagtaagcatatctttaaaa
atatttctggctatcatcccaattcttttttccttacattggaaatagat
tctcttctcacattgatagatcatgattatggcttccttccctctactac
tcccagttccctcccacgttcactcccatcctgatccactccctttctgt
gtctcattagaaaaagaacaggcttctaagagataataacaaaaactatc
acatgggatcaccccacattcttaaggtcacacagaaagactattcccag
acaaacccatcatacctttaaagtgtcaacatagaaaaccttcacagtgc
agtccagcaaagacacagccagcagcttttgattgggagagtagctgaca
cacaggacgtcctcatctagctgcaaggttcgagtctgcttcacagaaag
tctgcccagacagcatcaagaaaaagtaacacagatgagaatgccagaca
gacagctccaaatctgacacacaaaggcatgcaaatcaacggttctccac
ttcatgctaaagccccacggaagtttcccctcacctcttctgggtactat
ttttatctgtcaccaactcaaaatcccagaactttgacagcttttgtcag
cgcccacttgtcacaaaggccacgctgaaaaattcaattgaaccacttca
gataaaaaaacattttagcacaaaaa
gaattccagggcttcttgtagctgtcctccagtctctggtgtctgctctt
cctgagataatgtgctaggtggtactctactggtaatgttctagaagttt
gattcaggaatacacagaactgcctcctttaggacttgaatattctgcac
aaacatccgaagccccattggcacactcctttccttttctttcacctgca
gtgaattgcttgttatcatttcacatggcttgaaccacaggcatatacaa
acctcagaacagcacctgtgttctttactttcctaattgccacccagtgt
tattaatgttattaagcattatttatttcccaccatcactttggtctttc
ttcttacctatcctgtctagccaacagccagcctttctcgacccaccttc
aaataaagactaagtttttaatatataaccactcatcatcctaggctact
ttggcctaggttattcccagtggtcctatgctcttgcttcagtcttgttg
agcaagcttgttagtgatgtgtgcttgtcactagctaatggctttgtgca
tttttcttgacatttgtttgttcttgctttcaaatctttagcaaagacat
taaacaaaaccagactggaccctgctctctggggaagtgcccttagcccc
ccatgctcctccttggatctgtttctgtgttctcatataattatctttta
tttatgacctcccagcctgcaagcaagttcatgtgaccaggttcttttcc
aaggcaatctgggctggccatagagtagaaatggcatgccaggctgaaca
aaaacctttacccaagttccaaatcctttactaaagacctggctttgctc
tgcttttctctttacagtctctttgaactcacttcttcctataaatcctt
tcgtgactttatcctttcccagatgttgatggatcttcagtgttaacatt
ctgcctattactatgactattccaagttattgggccagtaatttcttaca
tttagctttcttttgctttccttttttgacagtacaccatacccccacgg
tagtgggccatcttctcaactctggccctggcaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99949640_99950756
seq2: B6Ng01-204K03.b_45_1170

seq1  GAATTCATGTTTGTCTACAAAATACAATCTGTTGCACATGGAGCTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTGTCTACAAAATACAATCTGTTGCACATGGAGCTAAATA  50

seq1  TAAAATTATAGTACTAAACACATATCTGGACTGCTTGCTAAGTGAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATAGTACTAAACACATATCTGGACTGCTTGCTAAGTGAGATTT  100

seq1  CCTGTGTCCACTATGGAGACCCTACGCATACTTGCCAAGAACCCTGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCCACTATGGAGACCCTACGCATACTTGCCAAGAACCCTGAAGC  150

seq1  CCAATTAAGAACATCAGGCTACCCAAAACCTACCCCTCAGAGTAGGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAGAACATCAGGCTACCCAAAACCTACCCCTCAGAGTAGGCCTA  200

seq1  AACAGACTATCTGGGATAACTGTTTCACAGGTTATCCTGAGGCCCAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTATCTGGGATAACTGTTTCACAGGTTATCCTGAGGCCCAAGAC  250

seq1  AGTCCTGAGCAATAACTCGCAGCAGCCTGTACTGAACAACACTTTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGAGCAATAACTCGCAGCAGCCTGTACTGAACAACACTTTCAAAG  300

seq1  CTGCTTGTTACGACGGGATAGAGATTTCTATCTATAGATCTTCAGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTTACGACGGGATAGAGATTTCTATCTATAGATCTTCAGAATAT  350

seq1  GAACTAGCATATTTATTTAGTTTTAAATAAAACTGATGAACCCTGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGCATATTTATTTAGTTTTAAATAAAACTGATGAACCCTGCAACA  400

seq1  CTATTAGTTTCTCAAGCACACTCAGTGTTTTAGTAAGCATATCTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTTTCTCAAGCACACTCAGTGTTTTAGTAAGCATATCTTTAAAA  450

seq1  ATATTTCTGGCTATCATCCCAATTCTTTTTTCCTTACATTGGAAATAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTGGCTATCATCCCAATTCTTTTTTCCTTACATTGGAAATAGAT  500

seq1  TCTCTTCTCACATTGATAGATCATGATTATGGCTTCCTTCCCTCTACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCACATTGATAGATCATGATTATGGCTTCCTTCCCTCTACTAC  550

seq1  TCCCAGTTCCCTCCCACGTTCACTCCCATCCTGATCCACTCCCTTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTCCCTCCCACGTTCACTCCCATCCTGATCCACTCCCTTTCTGT  600

seq1  GTCTCATTAGAAAAAGAACAGGCTTCTAAGAGATAATAACAAAAACTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTAGAAAAAGAACAGGCTTCTAAGAGATAATAACAAAAACTATC  650

seq1  ACATGGGATCACCCCACATTCTTAAGGTCACACAGAAAGACTATTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGATCACCCCACATTCTTAAGGTCACACAGAAAGACTATTCCCAG  700

seq1  ACAAACCCATCATACCTTTAAAGTGTCAACATAGAAAACCTTCACAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCATCATACCTTTAAAGTGTCAACATAGAAAACCTTCACAGTGC  750

seq1  AGTCCAGCAAAGACACAGCCAGCAGCTTTTGATTGGGAGAGTAGCTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCAAAGACACAGCCAGCAGCTTTTGATTGGGAGAGTAGCTGACA  800

seq1  CACAGGACGTCCTCATCTAGCTGCAAGGTTCGAGTCTGCTTCACAGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACGTCCTCATCTAGCTGCAAGGTTCGAGTCTGCTTCACAGAAAG  850

seq1  TCTGCCCAGACAGCATCAAGAAAAAGTAACACAGATGAGAATGCCAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAGACAGCATCAAGAAAAAGTAACACAGATGAGAATGCCAGACA  900

seq1  GACAGCTCCAAATCTGACACACAAAGGCATGCAAATCAACGGTTCTCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCCAAATCTGACACACAAAGGCATGCAAATCAACGGTTCTCCAC  950

seq1  TTCATGCTAAAGCCCCACGGAAGTTTCCCCTCACCTCTTCTGGGTACTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTAAAGCCCCACGGAAGTTTCCCCTCACCTCTTCTGGGTACTAT  1000

seq1  TTTTATCTGTCACCAACTCAAAATCCCAGAAC-TTGACAGC-TTTGTCAG  1048
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TTTTATCTGTCACCAACTCAAAATCCCAGAACTTTGACAGCTTTTGTCAG  1050

seq1  CG-CCACCTGTCACAAA-GCCACGCTGAAAA--TCAAATGA--CACTTCA  1092
      || |||| ||||||||| |||||||||||||  |||| |||  |||||||
seq2  CGCCCACTTGTCACAAAGGCCACGCTGAAAAATTCAATTGAACCACTTCA  1100

seq1  G-TTAAAAAACATTTTAGCACAAAAA  1117
      | | ||||||||||||||||||||||
seq2  GATAAAAAAACATTTTAGCACAAAAA  1126

seq1: chr3_100136053_100137132
seq2: B6Ng01-204K03.g_64_1150 (reverse)

seq1  ATATT-CCAGGG-CAGAGTGTGAGAAGATG--CCACTAACGTGGGGTTAA  46
      ||||| |||||| |||||| ||||||||||  |||||| ||||||| | |
seq2  ATATTGCCAGGGCCAGAGT-TGAGAAGATGGCCCACTACCGTGGGGGT-A  48

seq1  TGGTGTTACTGTCCAAAAAGGAAAGCAAAAGAAAGCTAATTGT-AGAAAT  95
      ||||| ||||||| ||||||||||||||||||||||||| ||| ||||||
seq2  TGGTG-TACTGTCAAAAAAGGAAAGCAAAAGAAAGCTAAATGTAAGAAAT  97

seq1  TACTGG-CCAATAACTTGG-ATAGTCATAGTAATAAGGCAG-ATGTTAAC  142
      |||||| |||||||||||| |||||||||||||| |||||| ||||||||
seq2  TACTGGCCCAATAACTTGGAATAGTCATAGTAAT-AGGCAGAATGTTAAC  146

seq1  ACTGAAGATCCATCAACATCTGGG-AAGGATAAAGTCACG-AAGGATTTA  190
      |||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  ACTGAAGATCCATCAACATCTGGGAAAGGATAAAGTCACGAAAGGATTTA  196

seq1  TAGGAAGAAGTGAGTTC-AAGAGACTGTAAAGAGAAAAGCAGAGCAAAGC  239
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGGAAGAAGTGAGTTCAAAGAGACTGTAAAGAGAAAAGCAGAGCAAAGC  246

seq1  CAGGTCTTTAGTAAAGGATTTGGAACTTGGGTAAAGGTTTTTGTTCAGCC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTAGTAAAGGATTTGGAACTTGGGTAAAGGTTTTTGTTCAGCC  296

seq1  TGGCATGCCATTTCTACTCTATGGCCAGCCCAGATTGCCTTGGAAAAGAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCCATTTCTACTCTATGGCCAGCCCAGATTGCCTTGGAAAAGAA  346

seq1  CCTGGTCACATGAACTTGCTTGCAGGCTGGGAGGTCATAAATAAAAGATA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCACATGAACTTGCTTGCAGGCTGGGAGGTCATAAATAAAAGATA  396

seq1  ATTATATGAGAACACAGAAACAGATCCAAGGAGGAGCATGGGGGGCTAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGAGAACACAGAAACAGATCCAAGGAGGAGCATGGGGGGCTAAG  446

seq1  GGCACTTCCCCAGAGAGCAGGGTCCAGTCTGGTTTTGTTTAATGTCTTTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCCCCAGAGAGCAGGGTCCAGTCTGGTTTTGTTTAATGTCTTTG  496

seq1  CTAAAGATTTGAAAGCAAGAACAAACAAATGTCAAGAAAAATGCACAAAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATTTGAAAGCAAGAACAAACAAATGTCAAGAAAAATGCACAAAG  546

seq1  CCATTAGCTAGTGACAAGCACACATCACTAACAAGCTTGCTCAACAAGAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCTAGTGACAAGCACACATCACTAACAAGCTTGCTCAACAAGAC  596

seq1  TGAAGCAAGAGCATAGGACCACTGGGAATAACCTAGGCCAAAGTAGCCTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGAGCATAGGACCACTGGGAATAACCTAGGCCAAAGTAGCCTA  646

seq1  GGATGATGAGTGGTTATATATTAAAAACTTAGTCTTTATTTGAAGGTGGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGAGTGGTTATATATTAAAAACTTAGTCTTTATTTGAAGGTGGG  696

seq1  TCGAGAAAGGCTGGCTGTTGGCTAGACAGGATAGGTAAGAAGAAAGACCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAAAGGCTGGCTGTTGGCTAGACAGGATAGGTAAGAAGAAAGACCA  746

seq1  AAGTGATGGTGGGAAATAAATAATGCTTAATAACATTAATAACACTGGGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGGTGGGAAATAAATAATGCTTAATAACATTAATAACACTGGGT  796

seq1  GGCAATTAGGAAAGTAAAGAACACAGGTGCTGTTCTGAGGTTTGTATATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTAGGAAAGTAAAGAACACAGGTGCTGTTCTGAGGTTTGTATATG  846

seq1  CCTGTGGTTCAAGCCATGTGAAATGATAACAAGCAATTCACTGCAGGTGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTTCAAGCCATGTGAAATGATAACAAGCAATTCACTGCAGGTGA  896

seq1  AAGAAAAGGAAAGGAGTGTGCCAATGGGGCTTCGGATGTTTGTGCAGAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAAAGGAGTGTGCCAATGGGGCTTCGGATGTTTGTGCAGAAT  946

seq1  ATTCAAGTCCTAAAGGAGGCAGTTCTGTGTATTCCTGAATCAAACTTCTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCCTAAAGGAGGCAGTTCTGTGTATTCCTGAATCAAACTTCTA  996

seq1  GAACATTACCAGTAGAGTACCACCTAGCACATTATCTCAGGAAGAGCAGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTACCAGTAGAGTACCACCTAGCACATTATCTCAGGAAGAGCAGA  1046

seq1  CACCAGAGACTGGAGGACAGCTACAAGAAGCCCTGGAATTC  1080
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGACTGGAGGACAGCTACAAGAAGCCCTGGAATTC  1087