BAC Information

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BAC

Clone NameB6Ng01-204N17
Chromosome3 (Build37)
Map Location 5,949,867 - 6,103,585
singlet/doubletdoublet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204N17.bB6Ng01-204N17.g
ACCGA024686GA024687
length1,0211,106
definitionB6Ng01-204N17.b B6Ng01-204N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,949,867 - 5,950,592)(6,102,458 - 6,103,585)
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgatgtg
ggcgttctgggttctgatgatggggagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaacagattgttcctctgttgattttgttaccctcta
tcatcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacttcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaatatgttgccgcctgagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgctgcctcataagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggtctctcccacaag
ctctgcgactctcgcccgtcccagaaacggctggcactctgtattccaca
cggtcacccgttcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcaggccgggcagacccccgtgc
tctcaccaggaaggtggccggctgtcttcacatgtgtatcttccatgttg
caacttccggagcttgcctgagcaccctccacaagcatcccagaggcagg
acagagaacacagcacacaggatccattcaagccttactcagctacttct
cccattttcaatttctgattttgttaaattggaccattatcccttggtgc
ccctctaatttagtctgggctatggggttaatcttatcttgtggattttc
tcaagaacccagctcctggtg

gaattcttagagactagttggatcaaaatgaatccctcctctttaaaata
taaaaagaatttaatgaatacaaaaggtatatttaatctctttgagttaa
cacccatgtagcactttcatttagctccaaagaaactacattaatgtgac
acatgaggaaatttcttcaccataaagataattatgatgccctcctaatg
agttctccacaccacttaaactcattatctttatgagaacactttgtttg
ccattttccttttcagctttattatttttctagcacatgatagctctacc
attagtctgcatgaaggaatatagggaatatggtcaaagatagaaataat
aaacaaatgggattccttaatggagattcactacacaatgccagttctgt
tttcatatccatcgatatggtactcctgacttttttattggctccctgcc
ataccttgaatttttaccatgctccatcatgtttcctttaatctgaatat
ttagtgttctttcatgtcttaattacagcaaattgctgcacagttggcac
catttcttgaaattaatcccagagtactttgtttctgtcaagcagtcaaa
gccttggagaataacagtaaatgttattgcaggtctaaatttaaatgact
gtctatgtatttaacttaaacctttaattattactgctgaactgtttttg
gttcaaatgttaaacattattcatagagaacataaaattactttagacag
cttgaaacccatggatatgttgcctataattttaacagaaaattatttac
attatccaattttctcaggtgtatacaactcagcaaatagcatgccatgc
aatgacttcaagtggatatgcatcaccccaagtatcatttcttcatggat
tattatattcctcttcacttacaaatgcttttctataggaatgtcaaatg
taatgtgattcagtgatgtctctttataatcgacgaaatatagacagatt
tcaagtcctacaaaattaagattatcatatgtatttttgctatggaccta
aatgtctagagcttcatagtgcctagctcataactctcaatgccacattc
tacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5949867_5950592
seq2: B6Ng01-204N17.b_319_1061

seq1  CTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTTT  50

seq1  CAGGGAAGGTGTACAGTTATCTGGTGTTTGGACTTCCTCCTGGCTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGTGTACAGTTATCTGGTGTTTGGACTTCCTCCTGGCTGAAGG  100

seq1  TGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGG  150

seq1  AAGGTGGCCAGTTGTCTGGAGTCGAAGATGTTGCCGCCTGAGAAGCTCTG  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGTGGCCAGTTGTCTGGAGTCGAATATGTTGCCGCCTGAGAAGCTCTG  200

seq1  TGGCTCTTGTCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGATGGCGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGTCCGGAAGGAGGCCGGCCGTCTGGAGCTGAGGATGGCGCTG  250

seq1  CCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGC  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGC  300

seq1  TGAAGATGGCGCCGCCCAGAAGCTCTGCGACTCTCGCCCGTCCCAGAAAC  350
      |||||||||   | |||| |||||||||||||||||||||||||||||||
seq2  TGAAGATGGTCTCTCCCACAAGCTCTGCGACTCTCGCCCGTCCCAGAAAC  350

seq1  GGCTGGCACTCTGTATTCCACACGGTCACCCGTTCAGCCTGCCCTCCGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCACTCTGTATTCCACACGGTCACCCGTTCAGCCTGCCCTCCGCG  400

seq1  GAGTCCCGGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCGGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCT  450

seq1  CAGGCCGGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTC-T  499
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGGCCGGGCAGACCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTT  500

seq1  CACATGTGTATC-TCCATGTTGCAACTT-CGGAGCTTGCCTGAGCACCCT  547
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  CACATGTGTATCTTCCATGTTGCAACTTCCGGAGCTTGCCTGAGCACCCT  550

seq1  CCAC-AGCAT-CCAGAGGCAGGACAGAGAACACAGCACACAGGA-CCATT  594
      |||| ||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CCACAAGCATCCCAGAGGCAGGACAGAGAACACAGCACACAGGATCCATT  600

seq1  CAAGCC-TACTCAGCTAC-TCTCCCATTT--CATTTCTGATTTTGTTAAA  640
      |||||| ||||||||||| ||||||||||   ||||||||||||||||||
seq2  CAAGCCTTACTCAGCTACTTCTCCCATTTTCAATTTCTGATTTTGTTAAA  650

seq1  TTGGA-CATTATCCCT--GTG-CCCTCT-ATTTAGTCT-GGCTAT-GGGT  683
      ||||| ||||||||||  ||| |||||| ||||||||| |||||| ||||
seq2  TTGGACCATTATCCCTTGGTGCCCCTCTAATTTAGTCTGGGCTATGGGGT  700

seq1  TTATCTTATCTTGTTGATTTTCTCAAAGAACCAGCTCCTGGTG  726
      | |||||||||||| |||||||||||  | |||||||||||||
seq2  TAATCTTATCTTGTGGATTTTCTCAAGAACCCAGCTCCTGGTG  743


seq1: chr3_6102458_6103585
seq2: B6Ng01-204N17.g_67_1172 (reverse)

seq1  TTTGTAGATATGTGGCAAATTTGAGAGTAAATGAGCTAGCAACTATG-AG  49
      |||||||| ||||||||   ||||||||  |||||||||  |||||| ||
seq2  TTTGTAGA-ATGTGGCA---TTGAGAGT-TATGAGCTAGGCACTATGAAG  45

seq1  CTCTTGGACATTTTAGGTTCCATAGC-AAAATACATTTATGAATAATCCT  98
      ||| | |||| |||||| |||||||| ||||||||  |||| ||||| ||
seq2  CTC-TAGACA-TTTAGG-TCCATAGCAAAAATACA--TATG-ATAAT-CT  88

seq1  TAATTTTGTAGGGACTTTTGAAATCCTGTCTTATATTTCTGTCGATTTAA  148
      |||||||||| ||||  ||||||| ||||| |||||||| |||||||  |
seq2  TAATTTTGTA-GGAC--TTGAAAT-CTGTC-TATATTTC-GTCGATT--A  130

seq1  TAAAGAGACATCACTGAATCCACATTACATTTGACATTCCTTATAGAAAA  198
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  TAAAGAGACATCACTGAAT-CACATTACATTTGACATTCC-TATAGAAAA  178

seq1  GCATTTGTAAGTGAAGAGGAATAATAATAATCCATGAAGAAATGATACTT  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCATTTGTAAGTGAAGAGGAAT-ATAATAATCCATGAAGAAATGATACTT  227

seq1  GGGGTGATGCATATCCACTTGAAGTCATTGCATGGCATGCTATTTGCTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATGCATATCCACTTGAAGTCATTGCATGGCATGCTATTTGCTGA  277

seq1  GTTGTATACACCTGAGAAAATTGGATAATGTAAATAATTTTCTGTTAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATACACCTGAGAAAATTGGATAATGTAAATAATTTTCTGTTAAAA  327

seq1  TTATAGGCAAACATATCCATGGGTTTCAAGCTGTCTAAAGTAATTTTATG  398
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGC-AACATATCCATGGGTTTCAAGCTGTCTAAAGTAATTTTATG  376

seq1  TTCTCTATGAATAATGTTTAACATTTGAACCAAAAACAGTTCAGCAGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATGAATAATGTTTAACATTTGAACCAAAAACAGTTCAGCAGTAA  426

seq1  TAATTAAAGGTTTAAGTTAAATACATAGACAGTCATTTAAATTTAGACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAGGTTTAAGTTAAATACATAGACAGTCATTTAAATTTAGACCT  476

seq1  GCAATAACATTTACTGTTATTCTCCAAGGCTTTGACTGCTTGACAGAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACATTTACTGTTATTCTCCAAGGCTTTGACTGCTTGACAGAAAC  526

seq1  AAAGTACTCTGGGATTAATTTCAAGAAATGGTGCCAACTGTGCAGCAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTCTGGGATTAATTTCAAGAAATGGTGCCAACTGTGCAGCAATT  576

seq1  TGCTGTAATTAAGACATGAAAGAACACTAAATATTCAGATTAAAGGAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATTAAGACATGAAAGAACACTAAATATTCAGATTAAAGGAAAC  626

seq1  ATGATGGAGCATGGTAAAAATTCAAGGTATGGCAGGGAGCCAATAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGAGCATGGTAAAAATTCAAGGTATGGCAGGGAGCCAATAAAAAA  676

seq1  GTCAGGAGTACCATATCGATGGATATGAAAACAGAACTGGCATTGTGTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGTACCATATCGATGGATATGAAAACAGAACTGGCATTGTGTAG  726

seq1  TGAATCTCCATTAAGGAATCCCATTTGTTTATTATTTCTATCTTTGACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCCATTAAGGAATCCCATTTGTTTATTATTTCTATCTTTGACCA  776

seq1  TATTCCCTATATTCCTTCATGCAGACTAATGGTAGAGCTATCATGTGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTATATTCCTTCATGCAGACTAATGGTAGAGCTATCATGTGCTA  826

seq1  GAAAAATAATAAAGCTGAAAAGGAAAATGGCAAACAAAGTGTTCTCATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAATAAAGCTGAAAAGGAAAATGGCAAACAAAGTGTTCTCATAA  876

seq1  AGATAATGAGTTTAAGTGGTGTGGAGAACTCATTAGGAGGGCATCATAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGAGTTTAAGTGGTGTGGAGAACTCATTAGGAGGGCATCATAAT  926

seq1  TATCTTTATGGTGAAGAAATTTCCTCATGTGTCACATTAATGTAGTTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATGGTGAAGAAATTTCCTCATGTGTCACATTAATGTAGTTTCT  976

seq1  TTGGAGCTAAATGAAAGTGCTACATGGGTGTTAACTCAAAGAGATTAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTAAATGAAAGTGCTACATGGGTGTTAACTCAAAGAGATTAAAT  1026

seq1  ATACCTTTTGTATTCATTAAATTCTTTTTATATTTTAAAGAGGAGGGATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTTGTATTCATTAAATTCTTTTTATATTTTAAAGAGGAGGGATT  1076

seq1  CATTTTGATCCAACTAGTCTCTAAGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  CATTTTGATCCAACTAGTCTCTAAGAATTC  1106


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