BAC Information

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BAC

Clone NameB6Ng01-204P13
Chromosome3 (Build37)
Map Location 49,069,971 - 49,208,910
singlet/doubletdoublet
Overlap gene4932443G14, LOC545519, LOC676568
Upstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
Downstream geneLOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204P13.bB6Ng01-204P13.g
ACCGA024774GA024775
length9621,132
definitionB6Ng01-204P13.b B6Ng01-204P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,207,971 - 49,208,910)(49,069,971 - 49,071,089)
sequence
gaattcacagtggtgttaccaacaatggagtaggatagcccatggaatag
cctgttaaatctggaacatctcttaatttgctactgttgctatgataaaa
cactgatgaagagcaacttatggaggacaggttccacacttcatgataca
cttctagttaccagttaactacttagaaatgtcggggcccaaactgaagc
agggcaggaatctggaggcaagaactgaagcagaagctgaataggagtgc
tgcctcctgtcctgcacctcatgttttttggtggttttttgtttgtttgt
ttgtttgtttgtttgtttgtttgtttgttttgtcaagtagctcaagagtc
gcaccgtcttggagatttgggcccaacaaattccattgttaatcaagaca
atatcccatagacttccctacacaatagttcaatctggtggaggcatttt
ctcaactaagatctctctactcaccaactgcttttctttgtcatttttct
attgcttaaataaaactcctgaactaaggcaatatatagaagtaaatgtt
tatttgggacttagatctgtagggaattacagtcgttcaaaggcgtgaca
gaggagcatggctgcaggaaggaaggacaaccaaacaggaaacagagctc
tggtggctctcagacagcaaacatgaagcacagagagcatactgcagatg
acacctggattctgtttatcttaaatttctaaccaatgacgtacatcctt
ccaggtaaccaagccactttaaaccacccacaaggtgccacaaagacagt
aaacatatttttgcaatgcctggaaataaaacagggcatcctatgaaaat
ttatcacaatgaaacttctaccttctttcaccacaccaccacaaaaaatc
acccaattcaagaaaactatgaaattccattttattttgatcccacacca
tgggttattttt
gaattccaaactgataaagcaaaaggcgccatcacatgatgataaacatt
atttcagtgaagaagattaagatttcacacagaatttttattttttagtt
ttaatttccaaactttgacagtgtacagagaaaatacaggctaagtagat
taattaaaatgagcatccaggcctgttagtactgacaagaaccagcagag
ggagatgaagtgggcaagtgagacaggatctagggaaatatcgaattgaa
tagactgcctttaaggactacctatgggctttccaatgactgtacagtgt
tctaaggcttgggtttgtgggaactgaaaagaaataccttttgttatcta
gtgggtgatgcctttagaagtaaatagatcttgtgcccagtttccaaacg
agagatgtaacatctgtgtttattaccatattaaacagagtttcaataag
gcactgcaagtatttgggtcatatttcacaatcattaaacaattagttca
ttcctgaagaaaaacagttcacgtgcaagtcagtttttaaagttagtaaa
aaggaaagctccgcatgtgtttgatgattaattgattaaaatatgtaatt
tccacaaaattcattataaactaaaatagcaaaataaattaggcttatta
ttaggatgtgcaattaaagtactttgtgtcaaacttcatgatttaatatt
attcatatattatagtactgctcatacattgttacattgtccattgagaa
gtaaagtttatgtaccttgacatatgttaagaatatgttggccccaacac
ccgcaagggcccacacgggactcccccacgggatcctaagacctctgggt
gagtggaacacagcgcctgcctcaatccaatcgcgccacggaaacctgag
actgcagtacatagggaagcaaggctacccgggccggatctggggcacaa
gttcccttccgctcgactcaagcccccgggctacctttgtcagcgggagt
ccgcctgacacctgcaagggcccacacagggatttccacacgagatccta
gacctctagtgaggtggtaccaacttctgcagggagtctgggtccgaaca
ccagatttctgggtacctgcccttgcagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49207971_49208910
seq2: B6Ng01-204P13.b_44_1004 (reverse)

seq1  AAAATAA-CCAT-GTGT-GGATCAAA--TAAATG--AATTCATAGTTTTC  43
      ||||||| |||| |||| ||||||||   |||||  | ||||||||||||
seq2  AAAATAACCCATGGTGTGGGATCAAAATAAAATGGAATTTCATAGTTTTC  50

seq1  TTGAATT-GGTGATTTTTTGTGGTGGTGTGGTGAA--GAGGTAG-AGTTT  89
      ||||||| |||||||||||||||||||||||||||   |||||| |||||
seq2  TTGAATTGGGTGATTTTTTGTGGTGGTGTGGTGAAAGAAGGTAGAAGTTT  100

seq1  CATTGTGAT-AATTTTCATAGGATG-CCTG-TTTAATTCCAGGCATTGC-  135
      ||||||||| ||||||||||||||| |||| |||| ||||||||||||| 
seq2  CATTGTGATAAATTTTCATAGGATGCCCTGTTTTATTTCCAGGCATTGCA  150

seq1  AAAATATG-TTACTGTCTTTGTGGCACCTTGT-GGTGGTTT-AAGTGGCT  182
      |||||||| ||||||||||||||||||||||| |||||||| ||||||||
seq2  AAAATATGTTTACTGTCTTTGTGGCACCTTGTGGGTGGTTTAAAGTGGCT  200

seq1  TGGTTACCTGG-AGGATGTACGTCATTGGTTAG-AATTTAAGAT-AACAG  229
      ||||||||||| ||||||||||||||||||||| |||||||||| |||||
seq2  TGGTTACCTGGAAGGATGTACGTCATTGGTTAGAAATTTAAGATAAACAG  250

seq1  AATCCAGGTGTCATCTGCAGTATGCTCTCTGTGCTTCATGTTTGCTGTCT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGTGTCATCTGCAGTATGCTCTCTGTGCTTCATGTTTGCTGTCT  300

seq1  GAGAGCCACCAGAGCTCTGTTTCCTGTTTGGTTGTCCTTCCTTCCTGCAG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCACCAGAGCTCTGTTTCCTGTTTGGTTGTCCTTCCTTCCTGCAG  350

seq1  CCATGCTCCTCTGTCACGCCTTTGAACGACTGTAATTCCCTACAGATCTA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCCTCTGTCACGCCTTTGAACGACTGTAATTCCCTACAGATCTA  400

seq1  AGTCCCAAATAAACATTTACTTCTATATATTGCCTTAGTTCAGGAGTTTT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAATAAACATTTACTTCTATATATTGCCTTAGTTCAGGAGTTTT  450

seq1  ATTTAAGCAATAGAAAAATGACAAAGAAAAGCAGTTGGTGAGTAGAGAGA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCAATAGAAAAATGACAAAGAAAAGCAGTTGGTGAGTAGAGAGA  500

seq1  TCTTAGTTGAGAAAATGCCTCCACCAGATTGAACTATTGTGTAGGGAAGT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTGAGAAAATGCCTCCACCAGATTGAACTATTGTGTAGGGAAGT  550

seq1  CTATGGGATATTGTCTTGATTAACAATGGAATTTGTTGGGCCCAAATCTC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGATATTGTCTTGATTAACAATGGAATTTGTTGGGCCCAAATCTC  600

seq1  CAAGACGGTGCGACTCTTGAGCTACTTGACAAAACAAACAAACAAACAAA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACGGTGCGACTCTTGAGCTACTTGACAAAACAAACAAACAAACAAA  650

seq1  CAAACAAACAAACAAACAAACAAAAAACCACCAAAAAACATGAGGTGCAG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAACAAACAAAAAACCACCAAAAAACATGAGGTGCAG  700

seq1  GACAGGAGGCAGCACTCCTATTCAGCTTCTGCTTCAGTTCTTGCCTCCAG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGGCAGCACTCCTATTCAGCTTCTGCTTCAGTTCTTGCCTCCAG  750

seq1  ATTCCTGCCCTGCTTCAGTTTGGGCCCCGACATTTCTAAGTAGTTAACTG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCCCTGCTTCAGTTTGGGCCCCGACATTTCTAAGTAGTTAACTG  800

seq1  GTAACTAGAAGTGTATCATGAAGTGTGGAACCTGTCCTCCATAAGTTGCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAGAAGTGTATCATGAAGTGTGGAACCTGTCCTCCATAAGTTGCT  850

seq1  CTTCATCAGTGTTTTATCATAGCAACAGTAGCAAATTAAGAGATGTTCCA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCAGTGTTTTATCATAGCAACAGTAGCAAATTAAGAGATGTTCCA  900

seq1  GATTTAACAGGCTATTCCATGGGCTATCCTACTCCATTGTTGGTAACACC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAACAGGCTATTCCATGGGCTATCCTACTCCATTGTTGGTAACACC  950

seq1  ACTGTGAATTC  940
      |||||||||||
seq2  ACTGTGAATTC  961

seq1: chr3_49069971_49071089
seq2: B6Ng01-204P13.g_67_1198

seq1  GAATTCCAAACTGATAAAGCAAAAGGCGCCATCACATGATGATAAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACTGATAAAGCAAAAGGCGCCATCACATGATGATAAACATT  50

seq1  ATTTCAGTGAAGAAGATTAAGATTTCACACAGAATTTTTATTTTTTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTGAAGAAGATTAAGATTTCACACAGAATTTTTATTTTTTAGTT  100

seq1  TTAATTTCCAAACTTTGACAGTGTACAGAGAAAATACAGGCTAAGTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCCAAACTTTGACAGTGTACAGAGAAAATACAGGCTAAGTAGAT  150

seq1  TAATTAAAATGAGCATCCAGGCCTGTTAGTACTGACAAGAACCAGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAATGAGCATCCAGGCCTGTTAGTACTGACAAGAACCAGCAGAG  200

seq1  GGAGATGAAGTGGGCAAGTGAGACAGGATCTAGGGAAATATCGAATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGAAGTGGGCAAGTGAGACAGGATCTAGGGAAATATCGAATTGAA  250

seq1  TAGACTGCCTTTAAGGACTACCTATGGGCTTTCCAATGACTGTACAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGCCTTTAAGGACTACCTATGGGCTTTCCAATGACTGTACAGTGT  300

seq1  TCTAAGGCTTGGGTTTGTGGGAACTGAAAAGAAATACCTTTTGTTATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGCTTGGGTTTGTGGGAACTGAAAAGAAATACCTTTTGTTATCTA  350

seq1  GTGGGTGATGCCTTTAGAAGTAAATAGATCTTGTGCCCAGTTTCCAAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGATGCCTTTAGAAGTAAATAGATCTTGTGCCCAGTTTCCAAACG  400

seq1  AGAGATGTAACATCTGTGTTTATTACCATATTAAACAGAGTTTCAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTAACATCTGTGTTTATTACCATATTAAACAGAGTTTCAATAAG  450

seq1  GCACTGCAAGTATTTGGGTCATATTTCACAATCATTAAACAATTAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCAAGTATTTGGGTCATATTTCACAATCATTAAACAATTAGTTCA  500

seq1  TTCCTGAAGAAAAACAGTTCACGTGCAAGTCAGTTTTTAAAGTTAGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAGAAAAACAGTTCACGTGCAAGTCAGTTTTTAAAGTTAGTAAA  550

seq1  AAGGAAAGCTCCGCATGTGTTTGATGATTAATTGATTAAAATATGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCTCCGCATGTGTTTGATGATTAATTGATTAAAATATGTAATT  600

seq1  TCCACAAAATTCATTATAAACTAAAATAGCAAAATAAATTAGGCTTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAATTCATTATAAACTAAAATAGCAAAATAAATTAGGCTTATTA  650

seq1  TTAGGATGTGCAATTAAAGTACTTTGTGTCAAACTTCATGATTTAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGTGCAATTAAAGTACTTTGTGTCAAACTTCATGATTTAATATT  700

seq1  ATTCATATATTATAGTACTGCTCATACATTGTTACATTGTCCATTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATATTATAGTACTGCTCATACATTGTTACATTGTCCATTGAGAA  750

seq1  GTAAAGTTTATGTACCTTGACATATGTTAAGAATATGTTGG-CCCAACAC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTAAAGTTTATGTACCTTGACATATGTTAAGAATATGTTGGCCCCAACAC  800

seq1  CCGCAAGGGCCCACACGGGACT-CCCCACGGGATCCTAAGACCTCT-GGT  847
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  CCGCAAGGGCCCACACGGGACTCCCCCACGGGATCCTAAGACCTCTGGGT  850

seq1  GAGTGGAACACAGCGCCTGCCTCAATCCAATCGCG-CACGG-AACCTGAG  895
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  GAGTGGAACACAGCGCCTGCCTCAATCCAATCGCGCCACGGAAACCTGAG  900

seq1  ACTGCAGTACATAGGGAAGC-AGGCTACCCGGGCCGGATCTGGGGCACAA  944
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTGCAGTACATAGGGAAGCAAGGCTACCCGGGCCGGATCTGGGGCACAA  950

seq1  G-TCCCTTCCGCTCGACTCAAG-CCCCGGGCTACC-TTGCCAGC-GGAGT  990
      | |||||||||||||||||||| |||||||||||| ||| |||| |||||
seq2  GTTCCCTTCCGCTCGACTCAAGCCCCCGGGCTACCTTTGTCAGCGGGAGT  1000

seq1  -CGCCTGACACCTGCAAGGGCCCACACAGG--ATTCCACACGAGATCCTA  1037
       |||||||||||||||||||||||||||||   |||||||||||||||| 
seq2  CCGCCTGACACCTGCAAGGGCCCACACAGGGATTTCCACACGAGATCCT-  1049

seq1  AGACCTCTAGTGA-GTGGAACACAACTTCTGCCAGGAGTCT-GGTTCGAA  1085
      ||||||||||||| |||| || ||||||||||  ||||||| ||| ||||
seq2  AGACCTCTAGTGAGGTGGTAC-CAACTTCTGCAGGGAGTCTGGGTCCGAA  1098

seq1  CACCAGATATCTGGGTACCTGCCCTGCAAGAAGA  1119
      |||||||| ||||||||||||||||   ||||||
seq2  CACCAGATTTCTGGGTACCTGCCCTTGCAGAAGA  1132