BAC Information

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BAC

Clone NameB6Ng01-205C08
Chromosome3 (Build37)
Map Location 149,178,572 - 149,306,982
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
Downstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205C08.bB6Ng01-205C08.g
ACCGA024904GA024905
length880962
definitionB6Ng01-205C08.b B6Ng01-205C08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,178,572 - 149,179,452)(149,306,371 - 149,306,982)
sequence
gaattcccccccccccccactccccatcggagccttagtgtttgatcaac
tatttgctaatcaccatctagaatccaattagttgcttgcattccctcct
ttctgagaagtgacctttattggcctttttgttttctgcagggcttccct
gtgtcttcctctactccgctggaagcttgacttcagcagatctcagggca
agcttccctactggaataaggcttgaaactgaactaaaagttgggccgtt
ttttccataacctgaagaacagaagaattaaacaactgatacttccctgt
tttcatgaatacaaaagggaattgcaaccatatttccaatttatccagag
aatgtgaagctaggtgtgtgcacaagtggatggtttacaggacctctcta
tactttctgcttagttttgctgttttctgtattaacaataaaatatttaa
agtatatacagaataaatatctatataaatggggacaattttccaatata
tcagcttccaaatcctgacaccactgcatacactagcaagattttgctga
aaggacccagatatagctgtctcttgtgagacaatgccagggcctagcaa
acacagaagtggatgctcacagtcagctattggatggagcacagggcccc
caatggaggagctagagaaagtacccaaggagctaaagggatctgcaacc
ctatacgtggaacaacattatgaactaaccagtaccccggagctcttgcc
tctagctgcatatgcatcaaagatggcctagtcagccatcactggaaaga
gaggcccattggacttgcaaactttatatgccccagtacaggggaacgcc
agggccaaaagtgggggtggggtggggggg

gaattcttgcctgaaggaacattaggaaattaaattaaaacaaaaaatat
tttaaactgttagaaaatattaaaaatattgcaagcaacatatgtttctt
ggttaattttgtacaattagaaaaatagatagaaagtgagtttggtggct
tgagtaggagcggccccagcaggccgtttgagtttttggtctccaggtgg
tggaactactcaggaagggttaggagaatttgtgagaggagatgagtcag
tggaggtaggcttttgggcttcaaaagaattgtaccatcctccccaaccc
acagtctcctacttgtagatcaagatgtgagtgttcaattattcctttgc
tctgccattacagattctaactctgccctccaaaaccacaagccaaatta
aatctgttttgcttttttttaagatgtaaccttggccatggtgtttcatc
acaacagtagaagagtaaataagacagtttgccagcatatgttgaatagg
aaatatgatgttctcagaactctgcgaacaataaaatcaacccctttgtc
actggaaatctttaccttctcagcaagctaatacctgggctggcaagatg
gcttagagggtaaaggtgcttattgcatcctgatgacctgaagctgattt
ccagaaagaaaaagaaaaaagaaaaaagaaaaagaaaaagaaaaagaaaa
agaaaaagaaaaagaaaaagaaaaagaaaaactaaaaccctctctaagtg
ttcaaccattaaattccagaaaaatgtagatcaagccatatttctggaaa
gacgaaagaaaaagtcagtaaaaataaaatcagaactcaaataaaatggg
aaaatgggagggagagaaaggcgctcaattaactaaaacctgactccaga
agctcttgcgaatataccaaactgatttgatgtaaacaaggacactggag
atgggaagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149178572_149179452
seq2: B6Ng01-205C08.b_46_925

seq1  GAATTCCCCCCCCCCCCCACTCCCCATCGGAGCCTTAGTGTTTGATCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCCCCCCCCCACTCCCCATCGGAGCCTTAGTGTTTGATCAAC  50

seq1  TATTTGCTAATCACCATCTAGAATCCAATTAGTTGCTTGCATTCCCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTAATCACCATCTAGAATCCAATTAGTTGCTTGCATTCCCTCCT  100

seq1  TTCTGAGAAGTGACCTTTATTGGCCTTTTTGTTTTCTGCAGGGCTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAAGTGACCTTTATTGGCCTTTTTGTTTTCTGCAGGGCTTCCCT  150

seq1  GTGTCTTCCTCTACTCCGCTGGAAGCTTGACTTCAGCAGATCTCAGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCCTCTACTCCGCTGGAAGCTTGACTTCAGCAGATCTCAGGGCA  200

seq1  AGCTTCCCTACTGGAATAAGGCTTGAAACTGAACTAAAAGTTGGGCCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCTACTGGAATAAGGCTTGAAACTGAACTAAAAGTTGGGCCGTT  250

seq1  TTTTCCATAACCTGAAGAACAGAAGAATTAAACAACTGATACTTCCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATAACCTGAAGAACAGAAGAATTAAACAACTGATACTTCCCTGT  300

seq1  TTTCATGAATACAAAAGGGAATTGCAACCATATTTCCAATTTATCCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAATACAAAAGGGAATTGCAACCATATTTCCAATTTATCCAGAG  350

seq1  AATGTGAAGCTAGGTGTGTGCACAAGTGGATGGTTTACAGGACCTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAGCTAGGTGTGTGCACAAGTGGATGGTTTACAGGACCTCTCTA  400

seq1  TACTTTCTGCTTAGTTTTGCTGTTTTCTGTATTAACAATAAAATATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTGCTTAGTTTTGCTGTTTTCTGTATTAACAATAAAATATTTAA  450

seq1  AGTATATACAGAATAAATATCTATATAAATGGGGACAATTTTCCAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATACAGAATAAATATCTATATAAATGGGGACAATTTTCCAATATA  500

seq1  TCAGCTTCCAAATCCTGACACCACTGCATACACTAGCAAGATTTTGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCCAAATCCTGACACCACTGCATACACTAGCAAGATTTTGCTGA  550

seq1  AAGGACCCAGATATAGCTGTCTCTTGTGAGACAATGCCAGGGCCTAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCAGATATAGCTGTCTCTTGTGAGACAATGCCAGGGCCTAGCAA  600

seq1  ACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAGCACAGGGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAGCACAGGGCCCC  650

seq1  CAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACC  700

seq1  CTATACGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGCC  750

seq1  TCTAGCTGCATATGCATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAG  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTAGCTGCATATGCATC-AAAGATGGCCTAGTCAGCCATCACTGGAAAG  799

seq1  AGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGC  849

seq1  CAGGGCCAAAAAGTGGGGGT-GGGTGGGGGGG  881
      ||||||| |||||||||||| |||||||||||
seq2  CAGGGCC-AAAAGTGGGGGTGGGGTGGGGGGG  880


seq1: chr3_149306371_149306982
seq2: B6Ng01-205C08.g_70_681 (reverse)

seq1  TACCCTCTAAGCCATCTTGCCAGCCCAGGTATTAGCTTGCTGAGAAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTAAGCCATCTTGCCAGCCCAGGTATTAGCTTGCTGAGAAGGTA  50

seq1  AAGATTTCCAGTGACAAAGGGGTTGATTTTATTGTTCGCAGAGTTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCCAGTGACAAAGGGGTTGATTTTATTGTTCGCAGAGTTCTGAG  100

seq1  AACATCATATTTCCTATTCAACATATGCTGGCAAACTGTCTTATTTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATATTTCCTATTCAACATATGCTGGCAAACTGTCTTATTTACTC  150

seq1  TTCTACTGTTGTGATGAAACACCATGGCCAAGGTTACATCTTAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGTTGTGATGAAACACCATGGCCAAGGTTACATCTTAAAAAAAA  200

seq1  GCAAAACAGATTTAATTTGGCTTGTGGTTTTGGAGGGCAGAGTTAGAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACAGATTTAATTTGGCTTGTGGTTTTGGAGGGCAGAGTTAGAATC  250

seq1  TGTAATGGCAGAGCAAAGGAATAATTGAACACTCACATCTTGATCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGCAGAGCAAAGGAATAATTGAACACTCACATCTTGATCTACAA  300

seq1  GTAGGAGACTGTGGGTTGGGGAGGATGGTACAATTCTTTTGAAGCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGACTGTGGGTTGGGGAGGATGGTACAATTCTTTTGAAGCCCAAA  350

seq1  AGCCTACCTCCACTGACTCATCTCCTCTCACAAATTCTCCTAACCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCTCCACTGACTCATCTCCTCTCACAAATTCTCCTAACCCTTCC  400

seq1  TGAGTAGTTCCACCACCTGGAGACCAAAAACTCAAACGGCCTGCTGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTTCCACCACCTGGAGACCAAAAACTCAAACGGCCTGCTGGGGC  450

seq1  CGCTCCTACTCAAGCCACCAAACTCACTTTCTATCTATTTTTCTAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCTACTCAAGCCACCAAACTCACTTTCTATCTATTTTTCTAATTGT  500

seq1  ACAAAATTAACCAAGAAACATATGTTGCTTGCAATATTTTTAATATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAACCAAGAAACATATGTTGCTTGCAATATTTTTAATATTTTC  550

seq1  TAACAGTTTAAAATATTTTTTGTTTTAATTTAATTTCCTAATGTTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTTAAAATATTTTTTGTTTTAATTTAATTTCCTAATGTTCCTTC  600

seq1  AGGCAAGAATTC  612
      ||||||||||||
seq2  AGGCAAGAATTC  612


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