BAC Information

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BAC

Clone NameB6Ng01-205H21
Chromosome3 (Build37)
Map Location 70,036,694 - 70,142,691
singlet/doubletdoublet
Overlap genenone
Upstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205H21.bB6Ng01-205H21.g
ACCGA025158GA025159
length1,2051,110
definitionB6Ng01-205H21.b B6Ng01-205H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,036,694 - 70,037,886)(70,141,576 - 70,142,691)
sequence
gaattcacagcaaccagccctccctagtgtcccaaattctaggattatag
agaagagccatcagactttaatagaagagataggtgctttgactctactc
tagacgaaggcaaagtggcctaaccacaataaaacaactgtattacgctt
ccatatcagctgtgtaggcaccagaaaaaggttcattttacattttgtgt
gtttatttatattttggaaaatagcacacttcacagaatgataatgaaca
tacaaataaactacattctaatatcacaactgtaattcttaacagtttat
tcagtctgttttacaggatggctattttctcaagtaaataatacatttac
tactagaattataacatacatgattgaaggaagactgacagcatagaaaa
agaaagaaagaaagaaagagagagagagaaagaaatgaatgaatgaatga
atgaatgaataaataaaagctataaaagcttcacatttcagattccagtt
tccaattccagtgtgtaatcacttttgtatgactatctttttgctttttc
tcaagtttatttcagccctcctctcttccaagtaactcttcccactctgt
tgctctttctacattggcgtactccatactcaccatgaagaatgctcctt
ccacttattgagatttaatttttaaaacttagagttgcatttctatttac
atggatatattttctcatatttaaccatcaatttcctgtagattgacacc
gtatttggaccctgtgtttggagacctatggagtactttggtaaaggcat
ttctgaactctgtggtctgtgatgtatctctttactttctggtctcctac
aattgcattcttccactctattattaagacagagacatgcttctcctatc
atctggaatcaggattatgaaaataaggattaactctaggtctttttttt
tttttcagattaaactcactttacacctcttacactatgtttcctttgac
atattatgaataagattctacagtagcaacagtacagatatgttgaaaaa
gattaaaatgcaggtgtgattggatattagaaaattattatgaactgaat
atttagcaaaagaaaaaagaagttaacattaccacattcttgaatttagt
cggtcctcaattcacagtctacaggtcaaagatgtcagaaggtggagatt
tgcat

gaattcaatgctctaaagtaaacttactatcaacactaagaaaatcaggg
ggattatcagatttagttgatagcaatttgtctttaaactttattgaaac
ttgtcatatacaaaccttccatcatgacatccataaatagactatctact
catatctacatgaagatttactctagatactccgtaaaatatagtcattc
atatcgatatgtggtagctctgcaaaaacagagtaccagaattcaggatt
aaacataaaattactgaaggtttaactacaaacacactaaagattcagtc
ttcatataaaaccacatctccgaaactacaacttctgagattcttgaaaa
gttactttatgtaaattaaactattattattattattattattttatcta
aaagcctatctaaaccaataatgtgatatatgcctaggatatcactgaga
tatcagatggtattaaagattgcaaagcatggatatagtttccctgtatt
acatcccactgtcatagctgagcaaagtaattgtctaaaacacaggaatg
tgaacagccagttatgtagtcaaaatttgtaagttgaaatcatttctaat
tcttgagagttaaagtgtttttgtctttaatgtgttctctatccagttac
taaggatataaaactcaagtcatggttcttccatttgaatactcttcact
aagttactctatcactagggcctcagggacgtcacctataaaacccaatt
caagctctaattccatttttttctaccccattaccactagtttatttgaa
gcaggaatgttaatcttatcaagtgaggaaagggtagtaaagggcacact
ctgaataaaggaaaatatacccatgaaaaattaataatattgatcccaat
ggaaagaagtactaataattaaactaaagaaaaagcaggagtgactagca
taaatatataaaagtcttgatgttagggattagtaggtaggaaacctaag
tgaacactgagactcaaacatttatgatccagaagaccgcaggatgttca
tgaaccctgacatctgttttcatactctttcttaataggaaacatttaaa
gatgtccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_70036694_70037886
seq2: B6Ng01-205H21.b_42_1246

seq1  GAATTCACAGCAACCAGCCCTCCCTAGTGTCCCAAATTCTAGGATTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCAACCAGCCCTCCCTAGTGTCCCAAATTCTAGGATTATAG  50

seq1  AGAAGAGCCATCAGACTTTAATAGAAGAGATAGGTGCTTTGACTCTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCCATCAGACTTTAATAGAAGAGATAGGTGCTTTGACTCTACTC  100

seq1  TAGACGAAGGCAAAGTGGCCTAACCACAATAAAACAACTGTATTACGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGAAGGCAAAGTGGCCTAACCACAATAAAACAACTGTATTACGCTT  150

seq1  CCATATCAGCTGTGTAGGCACCAGAAAAAGGTTCATTTTACATTTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCAGCTGTGTAGGCACCAGAAAAAGGTTCATTTTACATTTTGTGT  200

seq1  GTTTATTTATATTTTGGAAAATAGCACACTTCACAGAATGATAATGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATATTTTGGAAAATAGCACACTTCACAGAATGATAATGAACA  250

seq1  TACAAATAAACTACATTCTAATATCACAACTGTAATTCTTAACAGTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAAACTACATTCTAATATCACAACTGTAATTCTTAACAGTTTAT  300

seq1  TCAGTCTGTTTTACAGGATGGCTATTTTCTCAAGTAAATAATACATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGTTTTACAGGATGGCTATTTTCTCAAGTAAATAATACATTTAC  350

seq1  TACTAGAATTATAACATACATGATTGAAGGAAGACTGACAGCATAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAATTATAACATACATGATTGAAGGAAGACTGACAGCATAGAAAA  400

seq1  AGAAAGAAAGAAAGAAAGAGAGAGAGAGAAAGAAATGAATGAATGAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAGAGAGAGAGAAAGAAATGAATGAATGAATGA  450

seq1  ATGAATGAATAAATAAAAGCTATAAAAGCTTCACATTTCAGATTCCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAATAAATAAAAGCTATAAAAGCTTCACATTTCAGATTCCAGTT  500

seq1  TCCAATTCCAGTGTGTAATCACTTTTGTATGACTATCTTTTTGCTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCAGTGTGTAATCACTTTTGTATGACTATCTTTTTGCTTTTTC  550

seq1  TCAAGTTTATTTCAGCCCTCCTCTCTTCCAAGTAACTCTTCCCACTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTATTTCAGCCCTCCTCTCTTCCAAGTAACTCTTCCCACTCTGT  600

seq1  TGCTCTTTCTACATTGGCGTACTCCATACTCACCATGAAGAATGCTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTCTACATTGGCGTACTCCATACTCACCATGAAGAATGCTCCTT  650

seq1  CCACTTATTGAGATTTAATTTTTAAAACTTAGAGTTGCATTTCTATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTATTGAGATTTAATTTTTAAAACTTAGAGTTGCATTTCTATTTAC  700

seq1  ATGGATATATTTTCTCATATTTAACCATCAATTTCCTGTAGATTGACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATATTTTCTCATATTTAACCATCAATTTCCTGTAGATTGACACC  750

seq1  GTATTTGGACCCTGTGTTTGGAGACCTATGGAGTACTTTGGTAAAGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGACCCTGTGTTTGGAGACCTATGGAGTACTTTGGTAAAGGCAT  800

seq1  TTCTGAACTCTGTGGTCTGTGATGTATCTCTTTACTTTCTGGTCTCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTCTGTGGTCTGTGATGTATCTCTTTACTTTCTGGTCTCCTAC  850

seq1  AATTGCATTCTTCCACTCTATTATTAAGACAGAGACATGCTTCTCCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTCTTCCACTCTATTATTAAGACAGAGACATGCTTCTCCTATC  900

seq1  ATCTGGAATCAGGATTATGAAAAT-AGGATTAACTCTAGGTC--TTTTTT  947
      |||||||||||||||||||||||| |||||||||||||||||  ||||||
seq2  ATCTGGAATCAGGATTATGAAAATAAGGATTAACTCTAGGTCTTTTTTTT  950

seq1  TTTTTCAGATTAAAACTCACTTTACACCTC-TACACTATGTTTCCTTTGA  996
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  TTTTTCAGATT-AAACTCACTTTACACCTCTTACACTATGTTTCCTTTGA  999

seq1  CATATTATGAATAAGATTCTTACAGTAGCAACAGTACAGATATG-TGAAA  1045
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  CATATTATGAATAAGATTC-TACAGTAGCAACAGTACAGATATGTTGAAA  1048

seq1  AAGATTAAAATGCAGGTGTGATT-GATA-TAGAAA--TATAATG-ACAGA  1090
      ||||||||||||||||||||||| |||| ||||||  ||| ||| || ||
seq2  AAGATTAAAATGCAGGTGTGATTGGATATTAGAAAATTATTATGAACTGA  1098

seq1  ATATTAGCCAAAAGAAAAAAGAAG-TAACA-TAACACATTC-TGAA-TTA  1136
      |||||   |||||||||||||||| ||||| || ||||||| |||| |||
seq2  ATATTTAGCAAAAGAAAAAAGAAGTTAACATTACCACATTCTTGAATTTA  1148

seq1  GTC-GTCCTCATTCCACCAGCCTTCAGGTAAAAGATGCCAGGAAGTGGAG  1185
      ||| ||||||| | || ||| || ||||| ||||||| ||| | ||||||
seq2  GTCGGTCCTCAATTCA-CAGTCTACAGGTCAAAGATGTCAGAAGGTGGAG  1197

seq1  ATTTGCAT  1193
      ||||||||
seq2  ATTTGCAT  1205


seq1: chr3_70141576_70142691
seq2: B6Ng01-205H21.g_66_1175 (reverse)

seq1  TGTGGACATCTTTTAAATGTTTTCCCTTATTAGGAAAGAGGTATG-AAAC  49
      |||||||||| |||||||||||   | ||||| |||||| ||||| ||||
seq2  TGTGGACATC-TTTAAATGTTT---CCTATTAAGAAAGA-GTATGAAAAC  45

seq1  AGATGGTCAAGGTTCATGAAACATCCCTGC-GTCTTCTGGATCATAAATG  98
      |||| |||| |||||||| ||||| ||||| |||||||||||||||||||
seq2  AGAT-GTCAGGGTTCATG-AACAT-CCTGCGGTCTTCTGGATCATAAATG  92

seq1  TTTGAGTCTCAGTGTTCACTTAGGTTTCCTACCTACTAATCCCTAACATC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCTCAGTGTTCACTTAGGTTTCCTACCTACTAATCCCTAACATC  142

seq1  AAGACTTTTATATATTTATGCTAGTCACTCCTGCTTTTTCTTTAGTTTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTTATATATTTATGCTAGTCACTCCTGCTTTTTCTTTAGTTTAA  192

seq1  TTATTAGTACTTCTTTCCATTGGGATCAATATTATTAATTTTTCATGGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTACTTCTTTCCATTGGGATCAATATTATTAATTTTTCATGGGT  242

seq1  ATATTTTTCCTTTATTCAGAGTGTGCCCTTTACTACCC-TTCCTCACTTG  297
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATA-TTTTCCTTTATTCAGAGTGTGCCCTTTACTACCCTTTCCTCACTTG  291

seq1  ATAAGATTAACATTCCTGCTTCAAATAAACTAGTGGTAATGGGGTAGAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTAACATTCCTGCTTCAAATAAACTAGTGGTAATGGGGTAGAAA  341

seq1  AAAATGGAATTAGAGCTTGAATTGGGTTTTATAGGTGACGTCCCTGAGGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAATTAGAGCTTGAATTGGGTTTTATAGGTGACGTCCCTGAGGC  391

seq1  CCTAGTGATAGAGTAACTTAGTGAAGAGTATTCAAATGGAAGAACCATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGATAGAGTAACTTAGTGAAGAGTATTCAAATGGAAGAACCATGA  441

seq1  CTTGAGTTTTATATCCTTAGTAACTGGATAGAGAACACATTAAAGACAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTTATATCCTTAGTAACTGGATAGAGAACACATTAAAGACAAA  491

seq1  AACACTTTAACTCTCAAGAATTAGAAATGATTTCAACTTACAAATTTTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTAACTCTCAAGAATTAGAAATGATTTCAACTTACAAATTTTGA  541

seq1  CTACATAACTGGCTGTTCACATTCCTGTGTTTTAGACAATTACTTTGCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAACTGGCTGTTCACATTCCTGTGTTTTAGACAATTACTTTGCTC  591

seq1  AGCTATGACAGTGGGATGTAATACAGGGAAACTATATCCATGCTTTGCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGACAGTGGGATGTAATACAGGGAAACTATATCCATGCTTTGCAA  641

seq1  TCTTTAATACCATCTGATATCTCAGTGATATCCTAGGCATATATCACATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATACCATCTGATATCTCAGTGATATCCTAGGCATATATCACATT  691

seq1  ATTGGTTTAGATAGGCTTTTAGATAAAATAATAATAATAATAATAATAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTAGATAGGCTTTTAGATAAAATAATAATAATAATAATAATAGT  741

seq1  TTAATTTACATAAAGTAACTTTTCAAGAATCTCAGAAGTTGTAGTTTCGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTACATAAAGTAACTTTTCAAGAATCTCAGAAGTTGTAGTTTCGG  791

seq1  AGATGTGGTTTTATATGAAGACTGAATCTTTAGTGTGTTTGTAGTTAAAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGTTTTATATGAAGACTGAATCTTTAGTGTGTTTGTAGTTAAAC  841

seq1  CTTCAGTAATTTTATGTTTAATCCTGAATTCTGGTACTCTGTTTTTGCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAATTTTATGTTTAATCCTGAATTCTGGTACTCTGTTTTTGCAG  891

seq1  AGCTACCACATATCGATATGAATGACTATATTTTACGGAGTATCTAGAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCACATATCGATATGAATGACTATATTTTACGGAGTATCTAGAGT  941

seq1  AAATCTTCATGTAGATATGAGTAGATAGTCTATTTATGGATGTCATGATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCATGTAGATATGAGTAGATAGTCTATTTATGGATGTCATGATG  991

seq1  GAAGGTTTGTATATGACAAGTTTCAATAAAGTTTAAAGACAAATTGCTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTGTATATGACAAGTTTCAATAAAGTTTAAAGACAAATTGCTAT  1041

seq1  CAACTAAATCTGATAATCCCCCTGATTTTCTTAGTGTTGATAGTAAGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAATCTGATAATCCCCCTGATTTTCTTAGTGTTGATAGTAAGTTT  1091

seq1  ACTTTAGAGCATTGAATTC  1116
      |||||||||||||||||||
seq2  ACTTTAGAGCATTGAATTC  1110


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