BAC Information

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BAC

Clone NameB6Ng01-205K07
Chromosome3 (Build37)
Map Location 3,616,444 - 3,751,470
singlet/doubletdoublet
Overlap geneHnf4g
Upstream geneLOC667655, LOC100039140
Downstream geneEG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205K07.bB6Ng01-205K07.g
ACCGA025269GA025270
length1,196934
definitionB6Ng01-205K07.b B6Ng01-205K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,750,239 - 3,751,470)(3,616,444 - 3,617,374)
sequence
gaattctatgaaaattttgaataaagagagtaggagatattggtagttat
cagataggtgaaatgaaattaagaataaagcaaaatagaagatgaaaaga
catcttagattcttgaaaaaacctacctaattacagctattctgatgtca
ctgagtggaaatcaagttgctctagtatacccaattaatatcattaatta
gctagaaatcaccacacatgatttaagttctaaaagcaaacagtattttt
tttttttaatcagcacaggcactctaatagaaaatgaaaacattttattt
tgtctttctccctctaaatgttcaagggtatgctataaatatttaaaagc
tgtgatatacagccataggactgagaatcagtggattgcagtaatctgta
cctggtaatatgtttaggacaatgatgttcatcacaaagatgtattgtag
gaggcatgctggggggagggtgagaggaaaatcacagagccaagggaggg
acagacaccactcacggacttctgttcgaaagccagaaagttctttagaa
tgggcctcttagaaagctaggatcagcaaagttttcctcttagttattgg
aatcaaactgagagtgatttttaagaatcataattatttttaaaaggcaa
actaaaatttgaactaacttaaataatgacagacccatagaaaacttgta
atttaagaaatagaggctacctgtgtagaaaagtatataagcaaaaatat
ataaacagaagaaactcaaactacgaaaaactataggtgtcaggaagtac
ttaaataaatggcatcagagtaaaaccatcccaggtatcccagcaactct
gtgctctgtccttttgctgtatgctcattctcagtcactcttccctcatt
gtggttttagttgtcagacttggaaaacatgacagttgctaatcttttca
ttcggaaatcttgtgatgttggctgttgttgtagatgagcatgctaaatc
aattcaaatcaaatttaagtaaatcccctccttagaaatttgttctgaga
agatgaaagtaatttatagtgtactgggtagcatcagttcccttgggttt
ctcttagcctgccctctcagagagttcatctattcatgcacctgtaatat
gctctctaattccattcataagacacattagctcattatcttaaaa

gaattcagtttgtagaccaggctggcctcaaactcagaaatccacctgcc
tctgcctcctaagtgctgggattaaaggtgtgaaccaccatcactgcctt
ttgtattttttgttttgttttgttttggttttggtttttttgttttgttt
tgttttgttttgtttttttcttttttttttttcttttgagaatcttgata
gcattaaagaacaaagcctttgccactaaaagagctcttctgagttatag
ctccctgtagatagtataaagggatcattgaatcctcaagtcagtatgta
tgactatgtatttctcctccctgttctttgtccaaaatgtgtacatatat
aagtatataaatataagtatagaatcaggaaatccagataatgtggttcg
tagaattctgaaactattttgtattatttaaataatttcttctttcccca
gacatacattcaaaatatttttagctatataataagtgagttattttact
atattatggacttcagtagagagtagtagtgaggattaagaaacattcct
gtggactttgcctataataatacaggcaacacaataggaaaacattaata
gatatttcatatgggctgcctccagttggaagagatatttctttaagata
tagtctcacaatagatttaatattttaaactttttattgagtataatata
gatacagaaaaaccataagcatatagcttgataaatatttcacaactcta
cacacccaagtatctgacaattaggatttaaatatagagatatgaatgtc
cttttaagtatctctatgagtatgcatttgaaactaattattggcacaat
ttagccaataatctgaaactattgtatgtcctaccatgtctttctcaata
gagagcaagaaaaaattattgctagctgattgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_3750239_3751470
seq2: B6Ng01-205K07.b_41_1236 (reverse)

seq1  TTTTAAAGTATAATTGAGCTAAAAAATGTGTCCTTAATGAAAATTGAGGA  50
       ||| ||| |||| ||||||    ||||||||  | |||||      |||
seq2  -TTTTAAG-ATAA-TGAGCT----AATGTGTC--TTATGAA-----TGGA  36

seq1  ATTAGAAGGAGCATAAATTTACAGGTGCCATGAAATAGATGAACTCTTTC  100
      ||||||  |||||||   ||||||||| |||| ||||||||||||||   
seq2  ATTAGA--GAGCATA---TTACAGGTG-CATG-AATAGATGAACTCT---  76

seq1  CTGAGGAAGAGACAGCAAAGAGAAACACAAAGGGAACTGATTACTACCCA  150
      |||||  || |   || ||||||||| | ||||||||||| | |||||||
seq2  CTGAG--AGGGCAGGCTAAGAGAAAC-CCAAGGGAACTGA-TGCTACCCA  122

seq1  GTACAACTATAAATTAACTTTCAATCTTCTCAGAACAAATATCTAGGGAG  200
      |||| |||||||||| |||||| ||||||||||||||||| |||| ||||
seq2  GTAC-ACTATAAATT-ACTTTC-ATCTTCTCAGAACAAATTTCTAAGGAG  169

seq1  GGGATTTTACTTAAATTTGATTTGAATTTGATTTAGCATGCTCATCTACA  250
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGA-TTTACTTAAATTTGATTTGAA-TTGATTTAGCATGCTCATCTACA  217

seq1  ACAACAGCCAACATCACAAGATTTCCGAATGAAAAGATTAGCAAACTGTC  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAACAGCCAACATCACAAGATTTCCGAATGAAAAGATTAGC-AACTGTC  266

seq1  ATGTTTTCCAAGTCTGACAACTAAAACCAACAATGAGGGAAGAGTGACTG  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGTTTTCCAAGTCTGACAACTAAAACC-ACAATGAGGGAAGAGTGACTG  315

seq1  AGAATGAGCATACAGCAAAAGGACAGAGCACAGAGTTGCTGGGATACCTT  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAATGAGCATACAGCAAAAGGACAGAGCACAGAGTTGCTGGGATACC-T  364

seq1  GGGATGGTTTTACTCTGATGCCATTTATTTAAGTACTTCCTGACACCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGTTTTACTCTGATGCCATTTATTTAAGTACTTCCTGACACCTAT  414

seq1  AGTTTTTCGTAGTTTGAGTTTCTTCTGTTTATATATTTTTGCTTATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCGTAGTTTGAGTTTCTTCTGTTTATATATTTTTGCTTATATAC  464

seq1  TTTTCTACACAGGTAGCCTCTATTTCTTAAATTACAAGTTTTCTATGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACACAGGTAGCCTCTATTTCTTAAATTACAAGTTTTCTATGGGT  514

seq1  CTGTCATTATTTAAGTTAGTTCAAATTTTAGTTTGCCTTTTAAAAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTATTTAAGTTAGTTCAAATTTTAGTTTGCCTTTTAAAAATAAT  564

seq1  TATGATTCTTAAAAATCACTCTCAGTTTGATTCCAATAACTAAGAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCTTAAAAATCACTCTCAGTTTGATTCCAATAACTAAGAGGAAA  614

seq1  ACTTTGCTGATCCTAGCTTTCTAAGAGGCCCATTCTAAAGAACTTTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGATCCTAGCTTTCTAAGAGGCCCATTCTAAAGAACTTTCTGG  664

seq1  CTTTCGAACAGAAGTCCGTGAGTGGTGTCTGTCCCTCCCTTGGCTCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGAACAGAAGTCCGTGAGTGGTGTCTGTCCCTCCCTTGGCTCTGTG  714

seq1  ATTTTCCTCTCACCCTCCCCCCAGCATGCCTCCTACAATACATCTTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCTCACCCTCCCCCCAGCATGCCTCCTACAATACATCTTTGTG  764

seq1  ATGAACATCATTGTCCTAAACATATTACCAGGTACAGATTACTGCAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATCATTGTCCTAAACATATTACCAGGTACAGATTACTGCAATCC  814

seq1  ACTGATTCTCAGTCCTATGGCTGTATATCACAGCTTTTAAATATTTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTCTCAGTCCTATGGCTGTATATCACAGCTTTTAAATATTTATAG  864

seq1  CATACCCTTGAACATTTAGAGGGAGAAAGACAAAATAAAATGTTTTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTTGAACATTTAGAGGGAGAAAGACAAAATAAAATGTTTTCATT  914

seq1  TTCTATTAGAGTGCCTGTGCTGATTAAAAAAAAAAAATACTGTTTGCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAGAGTGCCTGTGCTGATTAAAAAAAAAAAATACTGTTTGCTTT  964

seq1  TAGAACTTAAATCATGTGTGGTGATTTCTAGCTAATTAATGATATTAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTAAATCATGTGTGGTGATTTCTAGCTAATTAATGATATTAATT  1014

seq1  GGGTATACTAGAGCAACTTGATTTCCACTCAGTGACATCAGAATAGCTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATACTAGAGCAACTTGATTTCCACTCAGTGACATCAGAATAGCTGT  1064

seq1  AATTAGGTAGGTTTTTTCAAGAATCTAAGATGTCTTTTCATCTTCTATTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTAGGTTTTTTCAAGAATCTAAGATGTCTTTTCATCTTCTATTT  1114

seq1  TGCTTTATTCTTAATTTCATTTCACCTATCTGATAACTACCAATATCTCC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTCTTAATTTCATTTCACCTATCTGATAACTACCAATATCTCC  1164

seq1  TACTCTCTTTATTCAAAATTTTCATAGAATTC  1232
      ||||||||||||||||||||||||||||||||
seq2  TACTCTCTTTATTCAAAATTTTCATAGAATTC  1196


seq1: chr3_3616444_3617374
seq2: B6Ng01-205K07.g_65_998

seq1  GAATTCAGTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCTAAGTGCTGGGATTAAAGGTGTGAACCACCATCACTGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTAAGTGCTGGGATTAAAGGTGTGAACCACCATCACTGCCTT  100

seq1  TTGTATTTTTTGTTTTGTTTTGTTTTGGTTTTGGTTTTTTTGTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTTTGTTTTGTTTTGTTTTGGTTTTGGTTTTTTTGTTTTGTTT  150

seq1  TGTTTTGTTTTGTTTTTTTCTTTTTTTTTTTTCTTTTGAGAATCTTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTTTTCTTTTTTTTTTTTCTTTTGAGAATCTTGATA  200

seq1  GCATTAAAGAACAAAGCCTTTGCCACTAAAAGAGCTCTTCTGAGTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAAGAACAAAGCCTTTGCCACTAAAAGAGCTCTTCTGAGTTATAG  250

seq1  CTCCCTGTAGATAGTATAAAGGGATCATTGAATCCTCAAGTCAGTATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTAGATAGTATAAAGGGATCATTGAATCCTCAAGTCAGTATGTA  300

seq1  TGACTATGTATTTCTCCTCCCTGTTCTTTGTCCAAAATGTGTACATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATGTATTTCTCCTCCCTGTTCTTTGTCCAAAATGTGTACATATAT  350

seq1  AAGTATATAAATATAAGTATAGAATCAGGAAATCCAGATAATGTGGTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATAAATATAAGTATAGAATCAGGAAATCCAGATAATGTGGTTCG  400

seq1  TAGAATTCTGAAACTATTTTGTATTATTTAAATAATTTCTTCTTTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTCTGAAACTATTTTGTATTATTTAAATAATTTCTTCTTTCCCCA  450

seq1  GACATACATTCAAAATATTTTTAGCTATATAATAAGTGAGTTATTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACATTCAAAATATTTTTAGCTATATAATAAGTGAGTTATTTTACT  500

seq1  ATATTATGGACTTCAGTAGAGAGTAGTAGTGAGGATTAAGAAACATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATGGACTTCAGTAGAGAGTAGTAGTGAGGATTAAGAAACATTCCT  550

seq1  GTGGACTTTGCCTATAATAATACAGGCAACACAATAGGAAAACATTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTTTGCCTATAATAATACAGGCAACACAATAGGAAAACATTAATA  600

seq1  GATATTTCATATGGGCTGCCTCCAGTTGGAAGAGATATTTCTTTAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCATATGGGCTGCCTCCAGTTGGAAGAGATATTTCTTTAAGATA  650

seq1  TAGTCTCACAATAGA-TTAATATTTTAAAC-TTTTATTGAGTATAATATA  698
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TAGTCTCACAATAGATTTAATATTTTAAACTTTTTATTGAGTATAATATA  700

seq1  GATACAGAAAAACCATAAGCATATAGCTTGATAAA-ATTTCACAACTCTA  747
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATACAGAAAAACCATAAGCATATAGCTTGATAAATATTTCACAACTCTA  750

seq1  CACACCCAAGTATCTGACAATTAGGATTTAAATATAGAGATATGAATGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAAGTATCTGACAATTAGGATTTAAATATAGAGATATGAATGTC  800

seq1  C-TTTAAGTATCTCTATGAGTATGCATTTGAAACTAATTATTGGCACAAT  846
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGTATCTCTATGAGTATGCATTTGAAACTAATTATTGGCACAAT  850

seq1  TTAGCCAATAATCTGAAACTATTGTATGTCCTACCATGTCTTTCTCAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAATAATCTGAAACTATTGTATGTCCTACCATGTCTTTCTCAATA  900

seq1  GAGAGCAAAGAAAAAATATTGCTAGCTGAATTGGA  931
      ||||||||  ||||| |||||||||||| ||||||
seq2  GAGAGCAAGAAAAAATTATTGCTAGCTG-ATTGGA  934


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