BAC Information

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BAC

Clone NameB6Ng01-205N14
Chromosome3 (Build37)
Map Location 66,371,025 - 66,470,555
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205N14.bB6Ng01-205N14.g
ACCGA025417GA025418
length1,1361,185
definitionB6Ng01-205N14.b B6Ng01-205N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,469,414 - 66,470,555)(66,371,025 - 66,371,745)
sequence
gaattcagcctctctgagctttcatctttattccatgataaaatggggca
ttaaaaccacatttcagggttttgtgaagactaggtaagatgacatgtac
aaagagattggtgcagaatttgggataaagtaaattccctgctattgatg
gctatgaagttattagacatgtatcattgccaatgacgtggatagtcttt
tatcttgtaactctcctctgtcctttgatattctatgtacctgcatgtct
ccagtatagggaaatcacttgtaagcatcagcataaaaagttatggtgtg
tttgaagtagcttttcttttcatctacgcactacatcattatactgaaat
gtgctgttaagatgtatggtgccgaggcgctacagcagccactaaagcgt
ttagtcatgattaagagtgattctctttatggataatacccactttttaa
ttttaccagtggtccaactagttagtcacatggttactgaaacacacgaa
cacttaaaggagtgcccacttaaagggatttaaagtatagttacagatac
aagtcattactatggataaactctctaccagcaagaggatgtaaattatt
acaaaagggaaaagagggcaatgggcaataagaaaaaggagaaggctttg
actgagaaagattgatttttcaataatgtgtcatttattgtgtttcctac
tcattagatttttaatttttttcttttttctttctttttttttaaagatt
tatttatttatttatttattattacatgtaagtacactgtagctgtcttc
agacaccccagaagaggacatcagatctcattacagatggttgtgagcca
tcatgtggttgctgggatttgaactcgggacctgtggaagagcagtcaat
gttcttaaccactgagccatctttctagcccctaattttttttttcctaa
aattttatctatgtgagtacgctgttgctgttttcagacacacagaagag
ggcatcagatcccattacaagatggttgtgagccacctgtggttgctggg
aatttgaactcagggaccttgaaagcagcagttgcccgttaccaactaag
ccactctcagcaaagattatcttagagtgctttctg
gaattcagctgcttaattccccagtgatatgcctacagactcaattaaca
cactctctttttaaaggaaagtctttcaagtgagtacaagccctagagcc
tttgaccattggaatctcaccctcaggcacctttgatgttgtctcagtac
aagctgtgtggcttcttttttaaaactgtgctagctggacagtggtagct
catgcctttaatcccagcacgtgggaggcagaggcaggtggatttctgag
ttcaaggccagcctggtctacaaagtgagttccaggacagccagagctat
acagagaagccctgtctcgggggggaaaaaaaaaaagacagaacactcat
gtaaaaaaaaaaagtaagtataaaaaaaaaaactgtgctaatttcttgaa
caacaatggcaattctgcctgtacattgttttgtctgcaaatttatatat
tttttttctgtccaaactgcatctttttcatgtgttcctgcttcattctt
ttgcttctggttcatactgtaagcctgcctaagaggagctagcagtagcc
atgccacaatctactggtcatgttgcttttacctttctctgtccaataac
ctggcccattataatttttttccattttttattaggtatttagctcattt
acatttccaatgctataccaaaagtccaccataccccccattataatttt
tattcagcctcactcaaaatttcaaaatacaagcaaaatatagccagagt
ttttgccagactataacagaactagtcgctattctgctttccagtagagt
cccatttaaaacctgagtacagactttaatatttgctcttctattgggct
ttctggtcttctgaattcctaccagagtcactcatggtaccccaagtagt
gtcatctactagagaccacattattcaaaacaagactatggggggacagt
ttagaattcaaattctagctatgcccaattttctcaattgtcttattttg
aaagattatatctacattagttcaatatctttgttttatttccacaatta
ttcaagaaaggctatttcctagattgactataatacatgacctattttaa
atgttttctggtggtggactgtagtagctaaatactatgttggtgcactt
cttctgactccaatcaatgatgaatgtatttagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_66469414_66470555
seq2: B6Ng01-205N14.b_49_1184 (reverse)

seq1  CAGAAAGCACTCTAAGATTAATCTTTTGGCCTGAAGAGGTGGCTTAG-TG  49
      ||||||||||||||||| ||||||||    ||| ||| ||||||||| ||
seq2  CAGAAAGCACTCTAAGA-TAATCTTT---GCTG-AGA-GTGGCTTAGTTG  44

seq1  GTTACGAGC-ACTGCCTGCTTTTCCAAAGGTCCTGAGTTCAAA-TCCCAG  97
      || ||| || |||| |||||||  ||| |  |||||||||||| ||||||
seq2  GTAACGGGCAACTG-CTGCTTT--CAAGGTCCCTGAGTTCAAATTCCCAG  91

seq1  CAACCACAAGGTGGCTCACAACCATC-TGTAATGGGATCTGATGCCCTCT  146
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  CAACCAC-AGGTGGCTCACAACCATCTTGTAATGGGATCTGATGCCCTCT  140

seq1  TCTGGTGTGTCTGAAAACAGCAACAGCGTACTCACATAGATAAAATTTTA  196
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCT-GTGTGTCTGAAAACAGCAACAGCGTACTCACATAGATAAAATTTTA  189

seq1  GG-AAAAAAAAATTAGGGGCTAGAAAGATGGCTCAGTGGTTAAGAACATT  245
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAATTAGGGGCTAGAAAGATGGCTCAGTGGTTAAGAACATT  239

seq1  GACTGCTCTTCCACAGGTCCCGAGTTCAAATCCCAGCAACCACATGATGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCTTCCACAGGTCCCGAGTTCAAATCCCAGCAACCACATGATGG  289

seq1  CTCACAACCATCTGTAATGAGATCTGATGTCCTCTTCTGGGGTGTCTGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCATCTGTAATGAGATCTGATGTCCTCTTCTGGGGTGTCTGAA  339

seq1  GACAGCTACAGTGTACTTACATGTAATAATAAATAAATAAATAAATAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACAGTGTACTTACATGTAATAATAAATAAATAAATAAATAAAT  389

seq1  CTTTAAAAAAAAAGAAAGAAAAAAGAAAAAAATTAAAAATCTAATGAGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAAAAAGAAAGAAAAAAGAAAAAAATTAAAAATCTAATGAGTA  439

seq1  GGAAACACAATAAATGACACATTATTGAAAAATCAATCTTTCTCAGTCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAATAAATGACACATTATTGAAAAATCAATCTTTCTCAGTCAA  489

seq1  AGCCTTCTCCTTTTTCTTATTGCCCATTGCCCTCTTTTCCCTTTTGTAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTCCTTTTTCTTATTGCCCATTGCCCTCTTTTCCCTTTTGTAAT  539

seq1  AATTTACATCCTCTTGCTGGTAGAGAGTTTATCCATAGTAATGACTTGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATCCTCTTGCTGGTAGAGAGTTTATCCATAGTAATGACTTGTA  589

seq1  TCTGTAACTATACTTTAAATCCCTTTAAGTGGGCACTCCTTTAAGTGTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACTATACTTTAAATCCCTTTAAGTGGGCACTCCTTTAAGTGTTC  639

seq1  GTGTGTTTCAGTAACCATGTGACTAACTAGTTGGACCACTGGTAAAATTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTCAGTAACCATGTGACTAACTAGTTGGACCACTGGTAAAATTA  689

seq1  AAAAGTGGGTATTATCCATAAAGAGAATCACTCTTAATCATGACTAAACG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGGTATTATCCATAAAGAGAATCACTCTTAATCATGACTAAACG  739

seq1  CTTTAGTGGCTGCTGTAGCGCCTCGGCACCATACATCTTAACAGCACATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGGCTGCTGTAGCGCCTCGGCACCATACATCTTAACAGCACATT  789

seq1  TCAGTATAATGATGTAGTGCGTAGATGAAAAGAAAAGCTACTTCAAACAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATAATGATGTAGTGCGTAGATGAAAAGAAAAGCTACTTCAAACAC  839

seq1  ACCATAACTTTTTATGCTGATGCTTACAAGTGATTTCCCTATACTGGAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAACTTTTTATGCTGATGCTTACAAGTGATTTCCCTATACTGGAGA  889

seq1  CATGCAGGTACATAGAATATCAAAGGACAGAGGAGAGTTACAAGATAAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGTACATAGAATATCAAAGGACAGAGGAGAGTTACAAGATAAAA  939

seq1  GACTATCCACGTCATTGGCAATGATACATGTCTAATAACTTCATAGCCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCCACGTCATTGGCAATGATACATGTCTAATAACTTCATAGCCAT  989

seq1  CAATAGCAGGGAATTTACTTTATCCCAAATTCTGCACCAATCTCTTTGTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCAGGGAATTTACTTTATCCCAAATTCTGCACCAATCTCTTTGTA  1039

seq1  CATGTCATCTTACCTAGTCTTCACAAAACCCTGAAATGTGGTTTTAATGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATCTTACCTAGTCTTCACAAAACCCTGAAATGTGGTTTTAATGC  1089

seq1  CCCATTTTATCATGGAATAAAGATGAAAGCTCAGAGAGGCTGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTATCATGGAATAAAGATGAAAGCTCAGAGAGGCTGAATTC  1136

seq1: chr3_66371025_66371745
seq2: B6Ng01-205N14.g_528_1250

seq1  CAAACTGCATCTTTTTCATGTGTTCCTGCTTCATTCTTTTGCTTCTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCATCTTTTTCATGTGTTCCTGCTTCATTCTTTTGCTTCTGGTT  50

seq1  CATACTGTAAGCCTGCCTAAGAGGAGCTAGCAGTAGCCATGCCACAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGTAAGCCTGCCTAAGAGGAGCTAGCAGTAGCCATGCCACAATCT  100

seq1  ACTGGTCATGTTGCTTTTACCTTTCTCTGTCCAATAACCTGGCCCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCATGTTGCTTTTACCTTTCTCTGTCCAATAACCTGGCCCATTAT  150

seq1  AATTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  200

seq1  CTATACCAAAAGTCCACCATACCCCCCATTATAATTTTTATTCAGCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCAAAAGTCCACCATACCCCCCATTATAATTTTTATTCAGCCTCA  250

seq1  CTCAAAATTTCAAAATACAAGCAAAATATAGCCAGAGTTTTTGCCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTTCAAAATACAAGCAAAATATAGCCAGAGTTTTTGCCAGACT  300

seq1  ATAACAGAACTAGTCGCTATTCTGCTTTCCAGTAGAGTCCCATTTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAACTAGTCGCTATTCTGCTTTCCAGTAGAGTCCCATTTAAAAC  350

seq1  CTGAGTACAGACTTTAATATTTGCTCTTCTATT-GGCTTTCTGGTCTTCT  399
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGAGTACAGACTTTAATATTTGCTCTTCTATTGGGCTTTCTGGTCTTCT  400

seq1  GAATTCCTACCAGAGTCACTCATGGTACCCAAAGTAGTGTCACCTACTAG  449
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  GAATTCCTACCAGAGTCACTCATGGTACCCCAAGTAGTGTCATCTACTAG  450

seq1  AGACCACA-TATTCAAAACAAGACTAT-GGGGGACAGTTTAG-ATTCAAA  496
      |||||||| |||||||||||||||||| |||||||||||||| |||||||
seq2  AGACCACATTATTCAAAACAAGACTATGGGGGGACAGTTTAGAATTCAAA  500

seq1  TTCTAGCTATGCCCAA-TTTCTCAATTGTCTTATTTTGAAAGA-TATATC  544
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TTCTAGCTATGCCCAATTTTCTCAATTGTCTTATTTTGAAAGATTATATC  550

seq1  TACATTAGTTTCCAATATCTTTGTTTTATT--CACAATTATTCAAGAAA-  591
      ||||||||||  ||||||||||||||||||  ||||||||||||||||| 
seq2  TACATTAGTT--CAATATCTTTGTTTTATTTCCACAATTATTCAAGAAAG  598

seq1  GCTATTTTCCTAGATTGACTATATTACAATGACTTATTTTAAATG-TTTC  640
      |||| |||||||||||||||||| ||| ||||| ||||||||||| ||||
seq2  GCTA-TTTCCTAGATTGACTATAATAC-ATGACCTATTTTAAATGTTTTC  646

seq1  T-GTG--TGACTGTAGTAGCCTAGATTACTAATGTTGGTGCCACTTCTTC  687
      | |||   ||||||||||| ||| | |||| ||||||||| |||||||||
seq2  TGGTGGTGGACTGTAGTAG-CTA-AATACT-ATGTTGGTG-CACTTCTTC  692

seq1  ATGACTCCCAATCTATGATGAATGATATTTAGTA  721
       ||||| |||||| |||||||||| |||||||||
seq2  -TGACT-CCAATCAATGATGAATG-TATTTAGTA  723