BAC Information

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BAC

Clone NameB6Ng01-206A02
Chromosome3 (Build37)
Map Location 122,663,791 - 122,792,844
singlet/doubletdoublet
Overlap geneUsp53, Myoz2, Synpo2
Upstream geneArhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206A02.bB6Ng01-206A02.g
ACCGA025536GA025537
length1,0991,147
definitionB6Ng01-206A02.b B6Ng01-206A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,663,791 - 122,664,895)(122,791,676 - 122,792,844)
sequence
gaattccatatatagccttagcttcctcaaaacacatactatattactta
tatgtattccaaaccgcaatctgaaactttagccaagcacttcaggtaac
ctatattaagctaaattctaagccttcagccgagaaagctacttcctggg
ctctcttattaaagcacattcgataatgtcagaaaggaaaatctatacta
tgttctaatttttcagaataaatgcctaatgtgtgtaagtgtgctcctag
cctctttgctaactattctttgagaagcttaccacagggctgttgtagaa
atgtacctcacgagttcggtaaagggcagagggtctgaggaagcgccaca
gctccggcacacacactgcggaagaacacaagctgctgagtccatcgctc
ccgagacagcagtccagtgtctacacagacaacccaggcacctcacctgc
tcatacagagtcatggcaaacttctgatgagtcacacaagacttagaggt
gcacatgtctgcgtccctgtttggcaccaggtgaaaatgaattcttgcca
atatattttcctaattaaaaaatttaaaaaaaaaaaaaaaaacaaaaaaa
aaaacaacacaagtgaagtaagttcctgatcttgcagagaacaccttaag
atataattacctttaactgaacattttccaaagtgtaaatgcaggaatgc
cataaccgctagcttttcaattttcccctttaatcactgcaaatgttcaa
gtattcaccttttgcaatgctagttttaaaaaaaaaaaaaaatcaaggaa
agaactttaaagccttattttaaatactaattaatatatagaattcagta
ttagaaactgaatttcttacattcccagcattcttttttttaaaactatt
acatgtatatacaatgaaattacatttgcctgacacaactaggccccact
tgatccagcccaaagatttatttattatattctaagtacactgtagctgt
ctcagatacaccagaagagggcatcagatcccattacagatgatgtgagc
cacatgtgggtgctgattgactcaagacttctgatgcagtcagtgctct
gaattcatagtagattgcatgacagttgaggaaggacagagacgtcacac
tctgcatctggggcattgtgttccgaacagaaggatcaggtctcagggac
gagaatgtctagtgtctcaggaattgcaaacagagatgcacccaggacac
agcagatttcgctggctatgcgtgggccaacaaaagacctctggcttttc
cttccatggagtgggaagccatagcagagttttcatcattgagctgagtg
tcataatctaacttgagttagaacaagcagtaagaccgggatcctgaaat
tcaagtagaagaagcaagggtggaagtagggacatgcagagccgatccaa
cagggctctcgatggcccagcccaacagggcagcagtggaagtcaggaca
aaccacaggtactggaagtgtagtgaggtcagccctctagagatttctga
ccaatcagcgtgtagacatatagaacggggaggaatggtgctgactgcaa
ggatcatagcaaatggaaaactgggatggtctttgtgcttgcgtgcttgc
ttccaatggcccacctctcctaggacctctgcttctcagatatcctaatc
aatggcttaaaggctaaggaaatgcactctgctcctatttatttgctttg
gacctctccagagctgctcatgataaagattatgtttgcaaaatgtattt
tttgattatgtgcttaaaagagaaaggtaccagaggagttgaaataatat
ttgtcaagtggaaatgctttctccgtggtgcatgagtaagcaagatttca
gccaagaaaattgttttagctttgtgcagtgtttatgagatcaaatattt
tgaatctgaaaacctgtatcaggttcaactcctctggctgctacaacagt
tcccattgctttagaactgcctttcttattagaagtacacttgagatggc
atttcctgctaaattcattaccacgtagttcaataaagaaaccaactagc
tgtcttgtacagctacataatcagaacatttatgacctgaaaagatgttg
ataaaattggattgtccttagccccttcggttttatctgaaggtaaatct
tgaagtggtctcccagtacgacggacgcatctaagtggatctgtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122663791_122664895
seq2: B6Ng01-206A02.b_46_1144

seq1  GAATTCCATATATAGCCTTAGCTTCCTCAAAACACATACTATATTACTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATATAGCCTTAGCTTCCTCAAAACACATACTATATTACTTA  50

seq1  TATGTATTCCAAACCGCAATCTGAAACTTTAGCCAAGCACTTCAGGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCCAAACCGCAATCTGAAACTTTAGCCAAGCACTTCAGGTAAC  100

seq1  CTATATTAAGCTAAATTCTAAGCCTTCAGCCGAGAAAGCTACTTCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTAAGCTAAATTCTAAGCCTTCAGCCGAGAAAGCTACTTCCTGGG  150

seq1  CTCTCTTATTAAAGCACATTCGATAATGTCAGAAAGGAAAATCTATACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTATTAAAGCACATTCGATAATGTCAGAAAGGAAAATCTATACTA  200

seq1  TGTTCTAATTTTTCAGAATAAATGCCTAATGTGTGTAAGTGTGCTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAATTTTTCAGAATAAATGCCTAATGTGTGTAAGTGTGCTCCTAG  250

seq1  CCTCTTTGCTAACTATTCTTTGAGAAGCTTACCACAGGGCTGTTGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGCTAACTATTCTTTGAGAAGCTTACCACAGGGCTGTTGTAGAA  300

seq1  ATGTACCTCACGAGTTCGGTAAAGGGCAGAGGGTCTGAGGAAGCGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTCACGAGTTCGGTAAAGGGCAGAGGGTCTGAGGAAGCGCCACA  350

seq1  GCTCCGGCACACACACTGCGGAAGAACACAAGCTGCTGAGTCCATCGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGGCACACACACTGCGGAAGAACACAAGCTGCTGAGTCCATCGCTC  400

seq1  CCGAGACAGCAGTCCAGTGTCTACACAGACAACCCAGGCACCTCACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGACAGCAGTCCAGTGTCTACACAGACAACCCAGGCACCTCACCTGC  450

seq1  TCATACAGAGTCATGGCAAACTTCTGATGAGTCACACAAGACTTAGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGAGTCATGGCAAACTTCTGATGAGTCACACAAGACTTAGAGGT  500

seq1  GCACATGTCTGCGTCCCTGTTTGGCACCAGGTGAAAATGAATTCTTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGTCTGCGTCCCTGTTTGGCACCAGGTGAAAATGAATTCTTGCCA  550

seq1  ATATATTTTCCTAATTAAAAAATTTAAAAAAAAAAAAAAAAACAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTCCTAATTAAAAAATTTAAAAAAAAAAAAAAAAACAAAAAAA  600

seq1  AAAACAACACAAGTGAAGTAAGTTCCTGATCTTGCAGAGAACACCTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACACAAGTGAAGTAAGTTCCTGATCTTGCAGAGAACACCTTAAG  650

seq1  ATATAATTACCTTTAACTGAACATTTTCCAAAGTGTAAATGCAGGAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTACCTTTAACTGAACATTTTCCAAAGTGTAAATGCAGGAATGC  700

seq1  CATAACCGCTAGCTTTTCAATTTTCCCCTTTAATCACTGCAAATGTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCGCTAGCTTTTCAATTTTCCCCTTTAATCACTGCAAATGTTCAA  750

seq1  GTATTCACCTTTTGCAATGCTAGTTTT-AAAAAAAAAAAAAATCAAGGAA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTATTCACCTTTTGCAATGCTAGTTTTAAAAAAAAAAAAAAATCAAGGAA  800

seq1  AGAACTTTAAAGCCTTATTTTAAATACTAATTAATATATAGAATTCAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTAAAGCCTTATTTTAAATACTAATTAATATATAGAATTCAGTA  850

seq1  TTAGAAACTGAATTTCTTACATTCCCAGCATTCTTTTTTTTAAAACTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACTGAATTTCTTACATTCCCAGCATTCTTTTTTTTAAAACTATT  900

seq1  ACATGTATATACAATG-AATTACATTTGCCTGACACAACTA-GCCCCACT  947
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  ACATGTATATACAATGAAATTACATTTGCCTGACACAACTAGGCCCCACT  950

seq1  TGATCCAGCCCAAAGATTTATTTATTATA-TCTAAGTACACTGTAGCTGT  996
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGATCCAGCCCAAAGATTTATTTATTATATTCTAAGTACACTGTAGCTGT  1000

seq1  CTTCAGATACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGA  1046
      | |||||||||||||||||||||||||||||||||||||||| | |||||
seq2  C-TCAGATACACCAGAAGAGGGCATCAGATCCCATTACAGAT-GATGTGA  1048

seq1  GCCACCATGTGGGTGCTTGGATTTGAACTCAGGACCTTCTGAAGTGCAGT  1096
      |||| ||||||||||||  ||||   ||||| || |||||||  ||||||
seq2  GCCA-CATGTGGGTGCT--GATT--GACTCAAGA-CTTCTGA--TGCAGT  1090

seq1  CAGTGCTCT  1105
      |||||||||
seq2  CAGTGCTCT  1099

seq1: chr3_122791676_122792844
seq2: B6Ng01-206A02.g_68_1214 (reverse)

seq1  TTCACAGATCACATTTAGATGCGTCTCTGTCTGTTGCTGGTGAGA-CACT  49
      |||||||||| || |||||||||  || |||   | |||| |||| ||||
seq2  TTCACAGATC-CACTTAGATGCG--TCCGTC--GTACTGG-GAGACCACT  44

seq1  TCCAGGCTCTACACTCAGGATAGAAACACGGAGGGGCTAAGGGACATTCT  99
      | || | | |||  ||| |||| |||| || ||||||||| ||||| || 
seq2  T-CAAGATTTACCTTCA-GATA-AAAC-CGAAGGGGCTAA-GGACAATC-  88

seq1  CAAATTTTTATCAACCATCTTTTCAGGTCAATTAAATGTTCTTGATTTAT  149
      |||  ||||||||| |||||||||||||||  ||||||||| ||| ||||
seq2  CAA--TTTTATCAA-CATCTTTTCAGGTCA--TAAATGTTC-TGA-TTAT  131

seq1  GTAGCTTGTTAACAAGACAGCTTAGTTGGTTTC-TTATTGAACTACGTGG  198
      ||||| |||  |||||||||| ||||||||||| ||||||||||||||||
seq2  GTAGC-TGT--ACAAGACAGC-TAGTTGGTTTCTTTATTGAACTACGTGG  177

seq1  TAATGAATTTAGCAGGGAAATGCCATCTCAAGTGTACTTCTAATAAGAAA  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAATGAATTTAGCA-GGAAATGCCATCTCAAGTGTACTTCTAATAAGAAA  226

seq1  GGCAGTTCTAAAGCAATGGGAACTGTTGTAGCAGCCAGAGGAGTTGAACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTCTAAAGCAATGGGAACTGTTGTAGCAGCCAGAGGAGTTGAACC  276

seq1  TGATACAGGTTTTCAGATTCAAAATATTTGATCTCATAAACACTGCACAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGGTTTTCAGATTCAAAATATTTGATCTCATAAACACTGCACAA  326

seq1  AGCTAAAACAATTTTCTTGGCTGAAATCTTGCTTACTCATGCACCACGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAACAATTTTCTTGGCTGAAATCTTGCTTACTCATGCACCACGGA  376

seq1  GAAAGCATTTCCACTTGACAAATATTATTTCAACTCCTCTGGTACCTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTTCCACTTGACAAATATTATTTCAACTCCTCTGGTACCTTTC  426

seq1  TCTTTTAAGCACATAATCAAAAAATACATTTTGCAAACATAATCTTTATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAGCACATAATCAAAAAATACATTTTGCAAACATAATCTTTATC  476

seq1  ATGAGCAGCTCTGGAGAGGTCCAAAGCAAATAAATAGGAGCAGAGTGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAGCTCTGGAGAGGTCCAAAGCAAATAAATAGGAGCAGAGTGCAT  526

seq1  TTCCTTAGCCTTTAAGCCATTGATTAGGATATCTGAGAAGCAGAGGTCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAGCCTTTAAGCCATTGATTAGGATATCTGAGAAGCAGAGGTCCT  576

seq1  AGGAGAGGTGGGCCATTGGAAGCAAGCACGCAAGCACAAAGACCATCCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGTGGGCCATTGGAAGCAAGCACGCAAGCACAAAGACCATCCCA  626

seq1  GTTTTCCATTTGCTATGATCCTTGCAGTCAGCACCATTCCTCCCCGTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCATTTGCTATGATCCTTGCAGTCAGCACCATTCCTCCCCGTTCT  676

seq1  ATATGTCTACACGCTGATTGGTCAGAAATCTCTAGAGGGCTGACCTCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTACACGCTGATTGGTCAGAAATCTCTAGAGGGCTGACCTCACT  726

seq1  ACACTTCCAGTACCTGTGGTTTGTCCTGACTTCCACTGCTGCCCTGTTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCAGTACCTGTGGTTTGTCCTGACTTCCACTGCTGCCCTGTTGG  776

seq1  GCTGGGCCATCGAGAGCCCTGTTGGATCGGCTCTGCATGTCCCTACTTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCATCGAGAGCCCTGTTGGATCGGCTCTGCATGTCCCTACTTCC  826

seq1  ACCCTTGCTTCTTCTACTTGAATTTCAGGATCCCGGTCTTACTGCTTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGCTTCTTCTACTTGAATTTCAGGATCCCGGTCTTACTGCTTGTT  876

seq1  CTAACTCAAGTTAGATTATGACACTCAGCTCAATGATGAAAACTCTGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAAGTTAGATTATGACACTCAGCTCAATGATGAAAACTCTGCTA  926

seq1  TGGCTTCCCACTCCATGGAAGGAAAAGCCAGAGGTCTTTTGTTGGCCCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCCACTCCATGGAAGGAAAAGCCAGAGGTCTTTTGTTGGCCCAC  976

seq1  GCATAGCCAGCGAAATCTGCTGTGTCCTGGGTGCATCTCTGTTTGCAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCAGCGAAATCTGCTGTGTCCTGGGTGCATCTCTGTTTGCAATT  1026

seq1  CCTGAGACACTAGACATTCTCGTCCCTGAGACCTGATCCTTCTGTTCGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGACACTAGACATTCTCGTCCCTGAGACCTGATCCTTCTGTTCGGA  1076

seq1  ACACAATGCCCCAGATGCAGAGTGTGACGTCTCTGTCCTTCCTCAACTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGCCCCAGATGCAGAGTGTGACGTCTCTGTCCTTCCTCAACTGT  1126

seq1  CATGCAATCTACTATGAATTC  1169
      |||||||||||||||||||||
seq2  CATGCAATCTACTATGAATTC  1147