BAC Information

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BAC

Clone NameB6Ng01-206A05
Chromosome3 (Build37)
Map Location 77,980,194 - 77,981,195
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206A05.bB6Ng01-206A05.g
ACCGA025541GA025542
length8961,009
definitionB6Ng01-206A05.b B6Ng01-206A05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggactgggcgaagtg
ggcgttctgggttctgatgctggtgagtggtcctggtttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcaa
tcagcaggcgtgggagacaagctctctcctctgagtttcagtggtcagag
cagtctctgcaggcaagctctcctctttcggggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatttt
cccagaagctgtgttgctttggccaggaaggtggcctgttgtctggagtc
gaagatgtcaccgcctcagaagctctgtggctctcgccaggaaggtggct
ggccgtctggagccgaagatggcgccacctcagaagctctgtggctctag
ccaggaaggtggctggttgtctggagccgaagatggcgccgccccagaag
ctctgcgactctcgccagtaccagaaacggctggcctctgtattccacac
ggtcacccgtgcagcctgcccttcgcggagtcctggagccaagaaggctc
cagccggggcctgtggcacaaacctctcaggccgggcagacccccgtgct
ctcacccagaaaggtggcggctgtctcttctttttttttttaactttgta
ttttctttgactattatttcagcatcctctttggtatcttcttacacctg
agattctctcttctctcttgtattgtgtggtgatatttgcatctgt
gaattctttccgtgatggaaatggatctgttttattccaggaaaatgcta
ttagtactaatagtcatacatcagccatgctgtaggtgttgaggataaca
aaatgatgcccgtggacataaagagatgaaagaatcaaccactgacttag
agaattttaatatgtatctttaaaataacaacgtatcattatactgatag
attcataggcatattaatcccttctcatttaagaagcttgtatttgtgac
agagagttggtaattaacatagagaccaacaacctcatcaaagtaaagaa
aataagcaactatggaatgtttggctctaagtggaatccatccatttgtc
tgtatatctgtctgtctatatgtatgtctatattgttacatatattttta
gacattcctcccaaaattcagggcatctttgagaagacaggaaacaatga
gtctaagagacagaggcagtggatgattataagaaaacagtatacatacg
aagttaccctaattttgacagtgtgccaaagaccagtgaaagcataagcc
agaccaaatcctagcatgatgaggagagttggacacaaaatcttagctca
acgggtaggttggttatactccagttgaaaatgaaacctccaagagtatt
tgagtaaacaaattggttttaatgggtttaaataaaaagggaagagacat
aaaattgaatggccaggcaggggcagtagaactagaaagaggtggaagaa
taaataaatatgttcaaaacatgcataaaattatcagataatgaattaat
tttaaaaggggaaactataataagtgcttgagatttataatttgtaaaaa
cagtattttatgcgacttctagctcagtgtaaatagcaattgtcctacag
catacttgactctaattgtgtttctagtctcaattggtaaccaatcactt
caaggtagcctattaattgatgatcgtgtgccctccactgtgagtgcaag
gattggcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77980194_77981195
seq2: B6Ng01-206A05.g_68_1076 (reverse)

seq1  TCGCCAATCCTTACACTCACAGT-GAGGGCACACGATCAACAATAAATA-  48
      |||||||||||| |||||||||| ||||||||||||||| |||| |||| 
seq2  TCGCCAATCCTTGCACTCACAGTGGAGGGCACACGATCATCAATTAATAG  50

seq1  GCTA-CTTGAAGTGTTTGGTTA-CAACTGAGACTAGAAACAC-ATTAGAG  95
      |||| ||||||||| ||||||| ||| ||||||||||||||| |||||||
seq2  GCTACCTTGAAGTGATTGGTTACCAATTGAGACTAGAAACACAATTAGAG  100

seq1  TCAAGTATGCTGTA-GACAATTGCTATTTACACTGAGCTAGAAGTCGCAT  144
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAAGTATGCTGTAGGACAATTGCTATTTACACTGAGCTAGAAGTCGCAT  150

seq1  AAAATACTGTTTTTACAAATTATAAATCTCAAGCACTTATTATAGTTT-C  193
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAATACTGTTTTTACAAATTATAAATCTCAAGCACTTATTATAGTTTCC  200

seq1  CCTTTTAAAATTAATTCATTATCTGATAATTTTATGCATGTTTTGAACAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAAATTAATTCATTATCTGATAATTTTATGCATGTTTTGAACAT  250

seq1  ATTTATTTATTCTTCCACCTCTTTCTAGTTCTACTGCCCCTGCCTGGCCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTCTTCCACCTCTTTCTAGTTCTACTGCCCCTGCCTGGCCA  300

seq1  TTCAATTTTATGTCTCTTCCCTTTTTATTTAAACCCATTAAAACCAATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTATGTCTCTTCCCTTTTTATTTAAACCCATTAAAACCAATTT  350

seq1  GTTTACTCAAATACTCTTGGAGGTTTCATTTTCAACTGGAGTATAACCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTCAAATACTCTTGGAGGTTTCATTTTCAACTGGAGTATAACCAA  400

seq1  CCTACCCGTTGAGCTAAGATTTTGTGTCCAACTCTCCTCATCATGCTAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCGTTGAGCTAAGATTTTGTGTCCAACTCTCCTCATCATGCTAGG  450

seq1  ATTTGGTCTGGCTTATGCTTTCACTGGTCTTTGGCACACTGTCAAAATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTCTGGCTTATGCTTTCACTGGTCTTTGGCACACTGTCAAAATTA  500

seq1  GGGTAACTTCGTATGTATACTGTTTTCTTATAATCATCCACTGCCTCTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACTTCGTATGTATACTGTTTTCTTATAATCATCCACTGCCTCTGT  550

seq1  CTCTTAGACTCATTGTTTCCTGTCTTCTCAAAGATGCCCTGAATTTTGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGACTCATTGTTTCCTGTCTTCTCAAAGATGCCCTGAATTTTGGG  600

seq1  AGGAATGTCTAAAAATATATGTAACAATATAGACATACATATAGACAGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTCTAAAAATATATGTAACAATATAGACATACATATAGACAGAC  650

seq1  AGATATACAGACAAATGGATGGATTCCACTTAGAGCCAAACATTCCATAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACAGACAAATGGATGGATTCCACTTAGAGCCAAACATTCCATAG  700

seq1  TTGCTTATTTTCTTTACTTTGATGAGGTTGTTGGTCTCTATGTTAATTAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTTTCTTTACTTTGATGAGGTTGTTGGTCTCTATGTTAATTAC  750

seq1  CAACTCTCTGTCACAAATACAAGCTTCTTAAATGAGAAGGGATTAATATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCTGTCACAAATACAAGCTTCTTAAATGAGAAGGGATTAATATG  800

seq1  CCTATGAATCTATCAGTATAATGATACGTTGTTATTTTAAAGATACATAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAATCTATCAGTATAATGATACGTTGTTATTTTAAAGATACATAT  850

seq1  TAAAATTCTCTAAGTCAGTGGTTGATTCTTTCATCTCTTTATGTCCACGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTCTAAGTCAGTGGTTGATTCTTTCATCTCTTTATGTCCACGG  900

seq1  GCATCATTTTGTTATCCTCAACACCTACAGCATGGCTGATGTATGACTAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTTTGTTATCCTCAACACCTACAGCATGGCTGATGTATGACTAT  950

seq1  TAGTACTAATAGCATTTTCCTGGAATAAAACAGATCCATTTCCATCACGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTAATAGCATTTTCCTGGAATAAAACAGATCCATTTCCATCACGG  1000

seq1  AAAGAATTC  1002
      |||||||||
seq2  AAAGAATTC  1009