BAC Information

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BAC

Clone NameB6Ng01-206E24
Chromosome3 (Build37)
Map Location 126,389,401 - 126,541,821
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206E24.bB6Ng01-206E24.g
ACCGA025761GA025762
length1,1601,070
definitionB6Ng01-206E24.b B6Ng01-206E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,540,662 - 126,541,821)(126,389,401 - 126,390,469)
sequence
gaattcctggttaacttagattcctttggcttggttttacttttatttac
caaatttttctaatttacagaaacttctttagaaatatgtatgttttctg
aaagatacatgttccctttgagctactaaaacattaagacccttgcagtc
tgagtggaaacactcactgattgttcatctcccttcctaccatattttga
aagtgactgctggaccttcatcagagctcatccactgtgactatcaaggc
tgtggtttctcttcttcctacatcaacaattttacaaaacttccaagtaa
tacatgctcagaacattatatagcatatactgttccttcactgggtctta
aaggctgttttcatatttttcaaaacaccatagactggtaggtctgaagg
acatatgtttcagttttaaacaagaacagttttcacagaggacagacaca
ctgtcagtagaaatacccattgaaggaaagagccaaagagccggtgaaag
tgggagatattcaaggaagagctggtaaggaacttggaatggataccatt
ttcaaagtagaatctgtgaaagtccatcccttccactaagttgcccaatg
cttcaggttcaaaggcagtgaggcctggatcacagatttttctgcagtaa
gaaaaaaaatatcatgagaaaatgtgcccacagtagaagtgctaagcact
cttgtttacagtcagtaaaggaaagagattctaaaaagcaccccaaatag
gaaatttctaccatggaccttgacaaggtaggtcaaagaacagaatccaa
aatgtcatttttgaagaaaactcacagagacacacaattaagttaaacag
tccaagcacaatcggcccctttgtaagatgcgtgcttcttaactttcagg
agttaattctttagttttttaactttggacttaggtttcctatgtttcaa
atcacaaagttgaggacatactccaccttccaactcctttcagccatatt
tagctttgggaaatagaattttttttggggacaatctttggagagacaca
gcttctccatcctctcaatactgtattggtactgaacatcaggaatagga
tgcctgactgacttctgatgtccagatgggttacattgggaggtatttga
agccttattt
gaattcactctgtaggccggctgggctggaatccatctcctcttgcccct
cagttgtaggcttaaaggcactaccaccaaagattcaagtcttgagaact
tacagcagttaaaagtgtcttgttttattttatttttccctaaagggaaa
cattttaaatggacccacactgatactttatgaaacaacaaattatttca
gtgctttttaaaaatcatgttttttttttactgtaaaataatatgtgtac
ttaagaatgattttggaaaaaaatatgatggttaattaagaaaccagtgg
aaatagtctgtaatttttgttttatgtttcagactttttataaagaatct
taggcatggctaaatttgaccattcccctgtgtgcattttttaatcactt
tatctattttgtgagaattgtcccattcaggacagtgactggaggctagt
gagcttgtgctagcagtgacctaggctgtcacaaagatgaagcagtagtc
aggagagatgatgcatttgagtgtgtaaacaataatgtcagaacgattgc
ttctctgcttgtaattgatgtagggtaattgggtatgtggagatcgatca
tgtcctgttaaaacaaacaaaacaaaaaaaagttagatgctagttagaga
ggaagacagattctactcagaactagtgcattatgggaaagaagtgagat
gcctagctctcacattctaacacgtagcatgactgacaggctcctgtagc
cacagactgtcctacgaaggccatgtgcaggggtccagggcagggccttt
ttaaaacaactttctagggttagatcaagagaatgtgctttgtgactgtg
ttaaaatggcctgatttgtatatatgaccttggaagtcatgctaaattgt
cgtgcaaacaaacgtggaactattcatgagcacaccccaggaagagagct
gtggaggctatgtcctccatcttcctgggtctttgaaaagtacttttcct
caaattcctcacaagacaatattacagtttggtttttccttattcttttt
gcatttgtagcaaatcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126540662_126541821
seq2: B6Ng01-206E24.b_43_1202 (reverse)

seq1  AAATAA-GCTTCAAAATACACTCAATGTAA-CCATCTGGACATTCCAGGA  48
      |||||| ||||||||   | | |||||||| ||||||||||||  || ||
seq2  AAATAAGGCTTCAAATACCTCCCAATGTAACCCATCTGGACAT--CA-GA  47

seq1  AGTTCAGTCAGGCATCCTATCCTTGATG-TCAGTTACAATACAGGTATTT  97
      || ||||||||||||||||| | ||||| |||||  ||||||| ||| ||
seq2  AG-TCAGTCAGGCATCCTATTCCTGATGTTCAGTACCAATACA-GTA-TT  94

seq1  GAGGAGGATGGAGAAGCTGTGTCTCT-CAAAGATTGTCCC--AAAAAAAT  144
      || ||||||||||||||||||||||| |||||||||||||  ||||||||
seq2  GA-GAGGATGGAGAAGCTGTGTCTCTCCAAAGATTGTCCCCAAAAAAAAT  143

seq1  TCTTATTTCCAAAGCTAAATATGGCTTGAAAGGAGTTGG-AGGTGGAGTA  193
      |||  || ||||||||||||||||| ||||||||||||| ||||||||||
seq2  TCTATTTCCCAAAGCTAAATATGGC-TGAAAGGAGTTGGAAGGTGGAGTA  192

seq1  TGTCCTCAACTTTGTGATTTGAAACATAGGAAACCTAAGTCCAAAGTTAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAACTTTGTGATTTGAAACATAGGAAACCTAAGTCCAAAGTTAA  242

seq1  AAAACTAAAGAATTAACT-CTGAAAGTTAAGAAGCACGCATCTTACAAAG  292
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAACTAAAGAATTAACTCCTGAAAGTTAAGAAGCACGCATCTTACAAAG  292

seq1  GGGCCGATTGTGCTTGGACTGTTTAACTTAATTGTGTGTCTCTGTGAGTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGATTGTGCTTGGACTGTTTAACTTAATTGTGTGTCTCTGTGAGTT  342

seq1  TTCTTCAAAAATGACATTTTGGATTCTGTTCTTTGACCTACCTTGTCAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAAATGACATTTTGGATTCTGTTCTTTGACCTACCTTGTCAAG  392

seq1  GTCCATGGTAGAAATTTCCTATTTGGGGTGCTTTTTAGAATCTCTTTCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGTAGAAATTTCCTATTTGGGGTGCTTTTTAGAATCTCTTTCCT  442

seq1  TTACTGACTGTAAACAAGAGTGCTTAGCACTTCTACTGTGGGCACATTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGACTGTAAACAAGAGTGCTTAGCACTTCTACTGTGGGCACATTTT  492

seq1  CTCATGATATTTTTTTTCTTACTGCAGAAAAATCTGTGATCCAGGCCTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATATTTTTTTTCTTACTGCAGAAAAATCTGTGATCCAGGCCTCA  542

seq1  CTGCCTTTGAACCTGAAGCATTGGGCAACTTAGTGGAAGGGATGGACTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTGAACCTGAAGCATTGGGCAACTTAGTGGAAGGGATGGACTTT  592

seq1  CACAGATTCTACTTTGAAAATGGTATCCATTCCAAGTTCCTTACCAGCTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTCTACTTTGAAAATGGTATCCATTCCAAGTTCCTTACCAGCTC  642

seq1  TTCCTTGAATATCTCCCACTTTCACCGGCTCTTTGGCTCTTTCCTTCAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGAATATCTCCCACTTTCACCGGCTCTTTGGCTCTTTCCTTCAAT  692

seq1  GGGTATTTCTACTGACAGTGTGTCTGTCCTCTGTGAAAACTGTTCTTGTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTCTACTGACAGTGTGTCTGTCCTCTGTGAAAACTGTTCTTGTT  742

seq1  TAAAACTGAAACATATGTCCTTCAGACCTACCAGTCTATGGTGTTTTGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAACATATGTCCTTCAGACCTACCAGTCTATGGTGTTTTGAA  792

seq1  AAATATGAAAACAGCCTTTAAGACCCAGTGAAGGAACAGTATATGCTATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAAACAGCCTTTAAGACCCAGTGAAGGAACAGTATATGCTATA  842

seq1  TAATGTTCTGAGCATGTATTACTTGGAAGTTTTGTAAAATTGTTGATGTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCTGAGCATGTATTACTTGGAAGTTTTGTAAAATTGTTGATGTA  892

seq1  GGAAGAAGAGAAACCACAGCCTTGATAGTCACAGTGGATGAGCTCTGATG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAGAAACCACAGCCTTGATAGTCACAGTGGATGAGCTCTGATG  942

seq1  AAGGTCCAGCAGTCACTTTCAAAATATGGTAGGAAGGGAGATGAACAATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAGCAGTCACTTTCAAAATATGGTAGGAAGGGAGATGAACAATC  992

seq1  AGTGAGTGTTTCCACTCAGACTGCAAGGGTCTTAATGTTTTAGTAGCTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGTTTCCACTCAGACTGCAAGGGTCTTAATGTTTTAGTAGCTCA  1042

seq1  AAGGGAACATGTATCTTTCAGAAAACATACATATTTCTAAAGAAGTTTCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACATGTATCTTTCAGAAAACATACATATTTCTAAAGAAGTTTCT  1092

seq1  GTAAATTAGAAAAATTTGGTAAATAAAAGTAAAACCAAGCCAAAGGAATC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAGAAAAATTTGGTAAATAAAAGTAAAACCAAGCCAAAGGAATC  1142

seq1  TAAGTTAACCAGGAATTC  1160
      ||||||||||||||||||
seq2  TAAGTTAACCAGGAATTC  1160

seq1: chr3_126389401_126390469
seq2: B6Ng01-206E24.g_67_1136

seq1  GAATTCACTCTGTAGGCCGGCTGGGCTGGAATCCATCTCCTCTTGCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGGCCGGCTGGGCTGGAATCCATCTCCTCTTGCCCCT  50

seq1  CAGTTGTAGGCTTAAAGGCACTACCACCAAAGATTCAAGTCTTGAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTAGGCTTAAAGGCACTACCACCAAAGATTCAAGTCTTGAGAACT  100

seq1  TACAGCAGTTAAAAGTGTCTTGTTTTATTTTATTTTTCCCTAAAGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGTTAAAAGTGTCTTGTTTTATTTTATTTTTCCCTAAAGGGAAA  150

seq1  CATTTTAAATGGACCCACACTGATACTTTATGAAACAACAAATTATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAATGGACCCACACTGATACTTTATGAAACAACAAATTATTTCA  200

seq1  GTGCTTTTTAAAAATCATGTTTTTTTTTTACTGTAAAATAATATGTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTTAAAAATCATGTTTTTTTTTTACTGTAAAATAATATGTGTAC  250

seq1  TTAAGAATGATTTTGGAAAAAAATATGATGGTTAATTAAGAAACCAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGATTTTGGAAAAAAATATGATGGTTAATTAAGAAACCAGTGG  300

seq1  AAATAGTCTGTAATTTTTGTTTTATGTTTCAGACTTTTTATAAAGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTGTAATTTTTGTTTTATGTTTCAGACTTTTTATAAAGAATCT  350

seq1  TAGGCATGGCTAAATTTGACCATTCCCCTGTGTGCATTTTTTAATCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATGGCTAAATTTGACCATTCCCCTGTGTGCATTTTTTAATCACTT  400

seq1  TATCTATTTTGTGAGAATTGTCCCATTCAGGACAGTGACTGGAGGCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTTGTGAGAATTGTCCCATTCAGGACAGTGACTGGAGGCTAGT  450

seq1  GAGCTTGTGCTAGCAGTGACCTAGGCTGTCACAAAGATGAAGCAGTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTGCTAGCAGTGACCTAGGCTGTCACAAAGATGAAGCAGTAGTC  500

seq1  AGGAGAGATGATGCATTTGAGTGTGTAAACAATAATGTCAGAACGATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATGATGCATTTGAGTGTGTAAACAATAATGTCAGAACGATTGC  550

seq1  TTCTCTGCTTGTAATTGATGTAGGGTAATTGGGTATGTGGAGATCGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCTTGTAATTGATGTAGGGTAATTGGGTATGTGGAGATCGATCA  600

seq1  TGTCCTGTTAAAACAAACAAAACAAAAAAAAGTTAGATGCTAGTTAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTTAAAACAAACAAAACAAAAAAAAGTTAGATGCTAGTTAGAGA  650

seq1  GGAAGACAGATTCTACTCAGAACTAGTGCATTATGGGAAAGAAGTGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGATTCTACTCAGAACTAGTGCATTATGGGAAAGAAGTGAGAT  700

seq1  GCCTAGCTCTCACATTCTAACACGTAGCATGACTGACAGGCTCCTGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCTCTCACATTCTAACACGTAGCATGACTGACAGGCTCCTGTAGC  750

seq1  CACAGACTGTCCTACGAAGGCCATGTGCAGGGGTCCAGGGCAGGGCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGTCCTACGAAGGCCATGTGCAGGGGTCCAGGGCAGGGCCTTT  800

seq1  TTAAAAACAACTTTCTAGGGTTAGATCAAGAGAATGTGC-TTGTGACTGT  849
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TT-AAAACAACTTTCTAGGGTTAGATCAAGAGAATGTGCTTTGTGACTGT  849

seq1  GTTAAAATGGCCTGATTTGTATAATATGACCTTGGAAGTCATGCTTAAAT  899
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GTTAAAATGGCCTGATTTGTAT-ATATGACCTTGGAAGTCATGC-TAAAT  897

seq1  TGTCGTGCAAACAAACGTGG-ACTATTCATGAGCACA-CCCAGGAAGAGA  947
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  TGTCGTGCAAACAAACGTGGAACTATTCATGAGCACACCCCAGGAAGAGA  947

seq1  GCTGTGGAGGCTATGTCCTCCATCTTCCT-GGTCTTTGAAAAGTACCTTT  996
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  GCTGTGGAGGCTATGTCCTCCATCTTCCTGGGTCTTTGAAAAGTACTTTT  997

seq1  CCTCAAATT-CTCACAAGACAATATTACAGTTTTTGTTTTTTCTTTATCT  1045
      ||||||||| |||||||||||||||||||| ||| |||||| |||  |||
seq2  CCTCAAATTCCTCACAAGACAATATTACAG-TTTGGTTTTTCCTTATTCT  1046

seq1  TTTTGCTATTGTAGCAGATCACTT  1069
      ||||||  |||||||| |||||||
seq2  TTTTGCATTTGTAGCAAATCACTT  1070