BAC Information

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BAC

Clone NameB6Ng01-206J09
Chromosome3 (Build37)
Map Location 157,663,113 - 157,856,959
singlet/doubletdoublet
Overlap geneAnkrd13c, Sfrs11, Lrrc40, Lrrc7
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206J09.bB6Ng01-206J09.g
ACCGA025963GA025964
length5511,046
definitionB6Ng01-206J09.b B6Ng01-206J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,856,404 - 157,856,959)(157,663,113 - 157,664,153)
sequence
catcacaataactcgtttttcagagacttttagtgttattatattccttt
gattattgtttcagggaagaaataaggaaagtgtcagtcctctaaaacta
acttgaaaatcactactgactataataggaataaaacaatggcactcctc
cagggttctggtttagttttgttgagggggtatttgttttacttggtttg
gtttagtttggtttggtttggtctggtctggtctggtctggtctggtctg
gtctggtctggtctggtctggtgtggtttggtttggtttgattcaggaaa
atgtacttactttgcttgtaagtgtaattcagggctggagaaatgactcg
gtcagtaaagagactgccagccaagcatgatggtctgacctcatcatttc
caagaaaaatgctctgttttcccttgggaatgtagtgatgatgtgtccct
tcatctccttgaagcaatagccccgttgaggtctgaaacaacacacatgc
attttgatggctgtagagtctgtacctagcaatgcagtcttttatcacag
t

gaattccataaacctttacttactgctgtgccactaactcttgaagagga
gttaggcacaccattaccgttccttatgcatatattgagttgacaagagg
tgaatgaataaaggttattttgaatgatatgtttatcttggctcaccagt
gtttctctttggtggagaacaaaatacctccccttgtatctaccccactg
tgctaaagaagaagcggccttgattttatttgattgatttcttattgaaa
ggcatgctatgattgtccatttgcatgttctgttctagtgttggggtatt
tgaccttgtctttttgtgagtgactatttgactagccttcattagacttc
ccagcaggtcagaggaaactatcatatagttacttgtggcatgtgccaga
taattcaacagaactttgaaatcaggcaggaaatcccagatacaacacag
tggaataaggcaggtcccctctatgttaattctgcaagggaaatgatttt
gaaataatttctgcgtctttcaactcaactttgtctgctcagcttattct
gtttttgcttcattgtagtcacataaccaaaaaagaaacattataaattt
gttataattttaacagtgcatatgtacagaatttttaatcacagtgcttt
ttattgttgaatgttgaaactgtagtagacggtgaaagagattgaattaa
atgatttttattttgttcctaaaatggtgtttaagttatattcagtatga
aattccttgactattcgtgttattttctgaactttcaaactgtttctttc
gtcccatttcttatagacatcttgtatttagcataattaatattatttct
gtagataagtagaagtattaatgagcattgatgagttctttacaaggcct
ctttaacagtgttctttctgttatagggcaccacacctgggcagagaact
ggtgtgcaaaagagagcaagaaaacatttaaagccactgtagccatgagc
ccaggatttccccttgggaattgaggtcgtaagtgtgcctgttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157856404_157856959
seq2: B6Ng01-206J09.b_48_604 (reverse)

seq1  ACTGTGAT-AAAGACTGCATTGCTAGGTACAGACTCTACAGCCATCAAAA  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATAAAAGACTGCATTGCTAGGTACAGACTCTACAGCCATCAAAA  50

seq1  TGCATGTGTGTTGTTTCAGACCTCAACGGGGCTATTGCTTCAAGGAGATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTTGTTTCAGACCTCAACGGGGCTATTGCTTCAAGGAGATG  100

seq1  AAGAGACACATCATCACTACATTCCCAAGGGAAAACAGAGCATTTTTCTT  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACACATCATCACTACATTCCCAAGGGAAAACAGAGCATTTTTCTT  150

seq1  GGAAATGATGAGGTCAGACCATCATGCTTGGCTGGCAGTCTCTTTACTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATGAGGTCAGACCATCATGCTTGGCTGGCAGTCTCTTTACTGA  200

seq1  CCGAGTCATTTCTCCAGCCCTGAATTACACTTACAAGCAAAGTAAGTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCATTTCTCCAGCCCTGAATTACACTTACAAGCAAAGTAAGTACA  250

seq1  TTTTCCTGAATCAAACCAAACCAAACCACACCAGACCAGACCAGACCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGAATCAAACCAAACCAAACCACACCAGACCAGACCAGACCAGA  300

seq1  CCAGACCAGACCAGACCAGACCAGACCAGACCAAACCAAACCAAACTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAGACCAGACCAGACCAGACCAGACCAAACCAAACCAAACTAAA  350

seq1  CCAAACCAAGTAAAACAAATACCCCCTCAACAAAACTAAACCAGAACCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAAGTAAAACAAATACCCCCTCAACAAAACTAAACCAGAACCCT  400

seq1  GGAGGAGTGCCATTGTTTTATTCCTATTATAGTCAGTAGTGATTTTCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTGCCATTGTTTTATTCCTATTATAGTCAGTAGTGATTTTCAAG  450

seq1  TTAGTTTTAGAGGACTGACACTTTCCTTATTTCTTCCCTGAAACAATAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTAGAGGACTGACACTTTCCTTATTTCTTCCCTGAAACAATAAT  500

seq1  CAAAGGAATATAATAACACTAAAAGTCTCTGAAAAACGAGTTATTGTGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAATATAATAACACTAAAAGTCTCTGAAAAACGAGTTATTGTGAT  550

seq1  GGAATTC  556
      |||||||
seq2  GGAATTC  557


seq1: chr3_157663113_157664153
seq2: B6Ng01-206J09.g_69_1114

seq1  GAATTCCATAAACCTTTACTTACTGCTGTGCCACTAACTCTTGAAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAACCTTTACTTACTGCTGTGCCACTAACTCTTGAAGAGGA  50

seq1  GTTAGGCACACCATTACCGTTCCTTATGCATATATTGAGTTGACAAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCACACCATTACCGTTCCTTATGCATATATTGAGTTGACAAGAGG  100

seq1  TGAATGAATAAAGGTTATTTTGAATGATATGTTTATCTTGGCTCACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATAAAGGTTATTTTGAATGATATGTTTATCTTGGCTCACCAGT  150

seq1  GTTTCTCTTTGGTGGAGAACAAAATACCTCCCCTTGTATCTACCCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTTGGTGGAGAACAAAATACCTCCCCTTGTATCTACCCCACTG  200

seq1  TGCTAAAGAAGAAGCGGCCTTGATTTTATTTGATTGATTTCTTATTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGAAGAAGCGGCCTTGATTTTATTTGATTGATTTCTTATTGAAA  250

seq1  GGCATGCTATGATTGTCCATTTGCATGTTCTGTTCTAGTGTTGGGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCTATGATTGTCCATTTGCATGTTCTGTTCTAGTGTTGGGGTATT  300

seq1  TGACCTTGTCTTTTTGTGAGTGACTATTTGACTAGCCTTCATTAGACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGTCTTTTTGTGAGTGACTATTTGACTAGCCTTCATTAGACTTC  350

seq1  CCAGCAGGTCAGAGGAAACTATCATATAGTTACTTGTGGCATGTGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGTCAGAGGAAACTATCATATAGTTACTTGTGGCATGTGCCAGA  400

seq1  TAATTCAACAGAACTTTGAAATCAGGCAGGAAATCCCAGATACAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAACAGAACTTTGAAATCAGGCAGGAAATCCCAGATACAACACAG  450

seq1  TGGAATAAGGCAGGTCCCCTCTATGTTAATTCTGCAAGGGAAATGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAGGCAGGTCCCCTCTATGTTAATTCTGCAAGGGAAATGATTTT  500

seq1  GAAATAATTTCTGCGTCTTTCAACTCAACTTTGTCTGCTCAGCTTATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATTTCTGCGTCTTTCAACTCAACTTTGTCTGCTCAGCTTATTCT  550

seq1  GTTTTTGCTTCATTGTAGTCACATAACCAAAAAAGAAACATTATAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGCTTCATTGTAGTCACATAACCAAAAAAGAAACATTATAAATTT  600

seq1  GTTATAATTTTAACAGTGCATATGTACAGAATTTTTAATCACAGTGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATTTTAACAGTGCATATGTACAGAATTTTTAATCACAGTGCTTT  650

seq1  TTATTGTTGAATGTTGAAACTGTAGTAGACGGTGAAAGAGATTGAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGAATGTTGAAACTGTAGTAGACGGTGAAAGAGATTGAATTAA  700

seq1  ATGATTTTTATTTTGTTCCTAAAATGGTGTTTAAGTTATATTCAGTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTATTTTGTTCCTAAAATGGTGTTTAAGTTATATTCAGTATGA  750

seq1  AATTCCTTGACTATTCGTGTTATTTTCTGAACTTTCAAACTGTTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTGACTATTCGTGTTATTTTCTGAACTTTCAAACTGTTTCTTTC  800

seq1  GTCCCATTTCTTATAGACATCTTGTATTTAGCATAA-TAATATTATTTCT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCCCATTTCTTATAGACATCTTGTATTTAGCATAATTAATATTATTTCT  850

seq1  GTAGATAAGTAGAAGTATTAATGAGCATTGATGAGTTCTTAACAAGGCCT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTAGATAAGTAGAAGTATTAATGAGCATTGATGAGTTCTTTACAAGGCCT  900

seq1  CCTTAACAGTGTTCTTTCTGTTATAGGGCACCACACCTGGGCAGAGAACT  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAGTGTTCTTTCTGTTATAGGGCACCACACCTGGGCAGAGAACT  950

seq1  GGTGTGC-AAAGAGAGCAAGAAAACATTTAAAGCCACTGTAGCCATGAG-  997
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTGTGCAAAAGAGAGCAAGAAAACATTTAAAGCCACTGTAGCCATGAGC  1000

seq1  CCAGGAATTTCCCCTGGGAATTGA-GTCGTAAGTGTG-CTGTTGAT  1041
      |||||| || ||| |||||||||| |||||||||||| ||||||||
seq2  CCAGGATTTCCCCTTGGGAATTGAGGTCGTAAGTGTGCCTGTTGAT  1046


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