BAC Information

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BAC

Clone NameB6Ng01-206K12
Chromosome3 (Build37)
Map Location 141,877,301 - 142,051,818
singlet/doubletdoublet
Overlap genePdlim5
Upstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3
Downstream geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206K12.bB6Ng01-206K12.g
ACCGA026017GA026018
length1,1401,028
definitionB6Ng01-206K12.b B6Ng01-206K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,877,301 - 141,878,293)(142,050,796 - 142,051,818)
sequence
gaattcacaaaacaaaaaaaaattagggtctcaaaatcagatactaccaa
aaaaacaaaacaaacaaaaacaaaaaaacaaaaaaaccctataaactaaa
tagcttactatatttctcaagatttcctcatagtaaaacaagtccaaaca
tggtagcaaaaaatttaaatagcagaaacaaatgaactagaacagactct
acacacacaaaacctgactccctgaaagaatgatattgtcagacatatgg
tgagattttaataaatgagaataagaggtgcaatacagttttcagactga
gaaatgaaagaggagcataattacatacgtaaccaacataaaaaattagg
atattattaaaagacttcttgccaattatttaaaagaaatgatacaatgc
aattatcaaaaacatttagcatggcaaaatacgctcagaaaaaaattaaa
ttacctgaaacattgtaagaaactgaatttttttcaattgtcaaaacttg
tcactaaaaaaataaaaataacaactgagcaaaacctctggattccaaag
gcttcaccccaaacagctaccgtacgtttaataaagaaatcatcctgtct
aatttgaaacattctaagcatagaaaaagaggagataatccttaattcac
cttctagtcatttctcactagcaaagcaggagcagtaatattaactttat
gttatgaaatgcttataaaaatataagtcctaaaactaaacctaaaaaca
aaagttacatagagattttatgtagaaacctgtaaaactttactgaaaga
cttttaaaagatctaaacaaatgaaggagtatactgtgttcacaggctgg
gtcatgtttccttaggcactggcccttgggaaattgatgggacaccactg
cagactgagtgttcattcacctgtagagaccattcccaacacccagaaag
ggaacaattgaagcttaactctcagagtgccataacaaataccttttaca
ttccttctagtctataacctggggagtctagacagctaccaacaccccac
agatgatgcatctgggagccatgcagaagagagggtgcaagaaattgagt
tcatgtgagatcgagaatacactgttctgtagtccactgt
gaattcatttgcttggaagttacagtagtccttttagaagctgctgaaga
tactgttttgggaaatacaaaattatatggtcaggaagaaagaacagtac
tgagtagtgtgttatttatttatcacctgacaggatttgatgaaatgaca
gacgtgctgctcacgtttttcagttttagtgggtgtaaatcttctgtatt
tggagggatttgcttctttaaaaggcattaattgaaatggtcctcaaagg
atggaatttgaatacctctagttttcctgtacttttttaaaattgtacta
tgatattgaatactttcgctgccgttgcttgactcctggttaagctatga
atgcagttgagtgcttctgcagacatgccagctgcagtttctctcctgga
gaacagactgaatcaccctgcagtccctttaagctgagatgagagagaac
tcttttactttgaataaatgggcccattgttagtttaaagctgttgagtc
atggtgcccagttacaaagttaacctagtttatgtaactacgtaacgtat
atttcacatgtatgctcacttgctgcttttaagataccaattgcctttct
ggggggagggttgtttcagaactcttttcagacatgttttctcttttatg
gtcacagatgtcaagtcaccctaagataattgtaaaaatagttttctgtt
gtaaagaaataaaaatgaatctatcttattacgaatgagtaatcttaaag
attttaggcttatatgctcttcacaaatactggttttgtagggaagttat
ttttaagaggaatctttcctggtaagaaggactctggtatctcatggagg
aagcagtactgcggggcttgaatgtaagactagcagacttcagacctaag
tagagaggggttttgtggtaacttgttcactttagtcttagtgctttccc
ctgtaaatgaagatggctgattgaaagcttgtggccttgcttcggtaatt
gaaaacctttggctggcgttggatgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141877301_141878293
seq2: B6Ng01-206K12.b_197_1182

seq1  AGCAAAAAATTTAAATAGCAGAAACAAATGAACTAGAACAGACTCTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAATTTAAATAGCAGAAACAAATGAACTAGAACAGACTCTACAC  50

seq1  ACACAAAACCTGACTCCCTGAAAGAATGATATTGTCAGACATATGGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACCTGACTCCCTGAAAGAATGATATTGTCAGACATATGGTGAG  100

seq1  ATTTTAATAAATGAGAATAAGAGGTGCAATACAGTTTTCAGACTGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATAAATGAGAATAAGAGGTGCAATACAGTTTTCAGACTGAGAAA  150

seq1  TGAAAGAGGAGCATAATTACATACGTAACCAACATAAAAAATTAGGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGGAGCATAATTACATACGTAACCAACATAAAAAATTAGGATAT  200

seq1  TATTAAAAGACTTCTTGCCAATTATTTAAAAGAAATGATACAATGCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGACTTCTTGCCAATTATTTAAAAGAAATGATACAATGCAATT  250

seq1  ATCAAAAACATTTAGCATGGCAAAATACGCTCAGAAAAAAATTAAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACATTTAGCATGGCAAAATACGCTCAGAAAAAAATTAAATTAC  300

seq1  CTGAAACATTGTAAGAAACTGAATTTTTTTCAATTGTCAAAACTTGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATTGTAAGAAACTGAATTTTTTTCAATTGTCAAAACTTGTCAC  350

seq1  TAAAAAAATAAAAATAACAACTGAGCAAAACCTCTGGATTCCAAAGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAAAATAACAACTGAGCAAAACCTCTGGATTCCAAAGGCTT  400

seq1  CACCCCAAACAGCTACCGTACGTTTAATAAAGAAATCATCCTGTCTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAAACAGCTACCGTACGTTTAATAAAGAAATCATCCTGTCTAATT  450

seq1  TGAAACATTCTAAGCATAGAAAAAGAGGAGATAATCCTTAATTCACCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTCTAAGCATAGAAAAAGAGGAGATAATCCTTAATTCACCTTC  500

seq1  TAGTCATTTCTCACTAGCAAAGCAGGAGCAGTAATATTAACTTTATGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTTCTCACTAGCAAAGCAGGAGCAGTAATATTAACTTTATGTTA  550

seq1  TGAAATGCTTATAAAAATATAAGTCCTAAAACTAAACCTAAAAACAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCTTATAAAAATATAAGTCCTAAAACTAAACCTAAAAACAAAAG  600

seq1  TTACATAGAGATTTTATGTAGAAACCTGTAAAACTTTACTGAAAGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGAGATTTTATGTAGAAACCTGTAAAACTTTACTGAAAGACTTT  650

seq1  TAAAAGATCTAAACAAATGAAGGAGTATACTGTGTTCACAGGCTGGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATCTAAACAAATGAAGGAGTATACTGTGTTCACAGGCTGGGTCA  700

seq1  TGTTTCCTTAGGCACTGGCCCTTGGGAAATTGATGGGACACCACTGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTAGGCACTGGCCCTTGGGAAATTGATGGGACACCACTGCAGA  750

seq1  CTGAGTGTTCATTCACCTGTAGAGACCATTCCCAACACCCAGAAAGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTCATTCACCTGTAGAGACCATTCCCAACACCCAGAAAGGGAA  800

seq1  CAATTGAAGCTTAACTCTCAGAGTGCCATAACAAATACCTTTAACATTCC  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAATTGAAGCTTAACTCTCAGAGTGCCATAACAAATACCTTTTACATTCC  850

seq1  TTCTAGGTCTATAACCT-GGGAGTCTAGACAGCTACCAAACACCCACAGA  899
      ||||| ||||||||||| |||||||||||||||||||||   ||||||||
seq2  TTCTA-GTCTATAACCTGGGGAGTCTAGACAGCTACCAACACCCCACAGA  899

seq1  TGATGCATCTGGGAGCCAATGCAGAAGAGAGGGTGCAAAGACATTGAGTT  949
      ||||||||||||||||| |||||||||||||||||| |||| ||||||||
seq2  TGATGCATCTGGGAGCC-ATGCAGAAGAGAGGGTGC-AAGAAATTGAGTT  947

seq1  CATTGTGAGATCAGAGAATACCAACTGTTCTTGTAGTCAACTGT  993
      || ||||||||| ||||||||  ||||||| ||||||| |||||
seq2  CA-TGTGAGATC-GAGAATAC--ACTGTTC-TGTAGTCCACTGT  986

seq1: chr3_142050796_142051818
seq2: B6Ng01-206K12.g_68_1095 (reverse)

seq1  CCACACCCAACGCCA-CCAAAGGTCTCAACTAACCGAAGCAAGACCACAA  49
      ||||| ||||||||| |||||||| |  | | ||||||||||| ||||||
seq2  CCACATCCAACGCCAGCCAAAGGTTTTCAATTACCGAAGCAAGGCCACAA  50

seq1  GC-TTCAATCAGCACTCTCCATTTACAGGGG-AAGCACTAAGTCCTAAGT  97
      || ||||||||||  ||| |||||||||||| |||||||||| |  ||||
seq2  GCTTTCAATCAGCCATCTTCATTTACAGGGGAAAGCACTAAGACTAAAGT  100

seq1  GAACAGGTTACCACAAAACCCCTCTCTACTTAGGTCTGAAGTCTGCTAGT  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTTACCACAAAACCCCTCTCTACTTAGGTCTGAAGTCTGCTAGT  150

seq1  CTTACA-TCAAGCCCCGCAGTACTGCTTCCTCCATGAGATACCAGAGTCC  196
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTCAAGCCCCGCAGTACTGCTTCCTCCATGAGATACCAGAGTCC  200

seq1  TTCTTACCAGG-AAGATTCCTCTTAAAAATAACTTCCCTACAAAACCAGT  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCAGGAAAGATTCCTCTTAAAAATAACTTCCCTACAAAACCAGT  250

seq1  ATTTGTGAAGAGCATATAAGCCTAAAATCTTTAAGATTACTCATTCGTAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAAGAGCATATAAGCCTAAAATCTTTAAGATTACTCATTCGTAA  300

seq1  TAAGATAGATTCATTTTTATTTCTTTACAACAGAAAACTATTTTTACAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGATTCATTTTTATTTCTTTACAACAGAAAACTATTTTTACAAT  350

seq1  TATCTTAGGGTGACTTGACATCTGTGACCATAAAAGAGAAAACATGTCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGGGTGACTTGACATCTGTGACCATAAAAGAGAAAACATGTCTG  400

seq1  AAAAGAGTTCTGAAACAACCCTCCCCCCAGAAAGGCAATTGGTATCTTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTTCTGAAACAACCCTCCCCCCAGAAAGGCAATTGGTATCTTAA  450

seq1  AAGCAGCAAGTGAGCATACATGTGAAATATACGTTACGTAGTTACATAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAAGTGAGCATACATGTGAAATATACGTTACGTAGTTACATAAA  500

seq1  CTAGGTTAACTTTGTAACTGGGCACCATGACTCAACAGCTTTAAACTAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTAACTTTGTAACTGGGCACCATGACTCAACAGCTTTAAACTAAC  550

seq1  AATGGGCCCATTTATTCAAAGTAAAAGAGTTCTCTCTCATCTCAGCTTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCCATTTATTCAAAGTAAAAGAGTTCTCTCTCATCTCAGCTTAA  600

seq1  AGGGACTGCAGGGTGATTCAGTCTGTTCTCCAGGAGAGAAACTGCAGCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGCAGGGTGATTCAGTCTGTTCTCCAGGAGAGAAACTGCAGCTG  650

seq1  GCATGTCTGCAGAAGCACTCAACTGCATTCATAGCTTAACCAGGAGTCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTGCAGAAGCACTCAACTGCATTCATAGCTTAACCAGGAGTCAA  700

seq1  GCAACGGCAGCGAAAGTATTCAATATCATAGTACAATTTTAAAAAAGTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGGCAGCGAAAGTATTCAATATCATAGTACAATTTTAAAAAAGTAC  750

seq1  AGGAAAACTAGAGGTATTCAAATTCCATCCTTTGAGGACCATTTCAATTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACTAGAGGTATTCAAATTCCATCCTTTGAGGACCATTTCAATTA  800

seq1  ATGCCTTTTAAAGAAGCAAATCCCTCCAAATACAGAAGATTTACACCCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTAAAGAAGCAAATCCCTCCAAATACAGAAGATTTACACCCAC  850

seq1  TAAAACTGAAAAACGTGAGCAGCACGTCTGTCATTTCATCAAATCCTGTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGAAAAACGTGAGCAGCACGTCTGTCATTTCATCAAATCCTGTC  900

seq1  AGGTGATAAATAAATAACACACTACTCAGTACTGTTCTTTCTTCCTGACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAAATAAATAACACACTACTCAGTACTGTTCTTTCTTCCTGACC  950

seq1  ATATAATTTTGTATTTCCCAAAACAGTATCTTCAGCAGCTTCTAAAAGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTTGTATTTCCCAAAACAGTATCTTCAGCAGCTTCTAAAAGGA  1000

seq1  CTACTGTAACTTCCAAGCAAATGAATTC  1023
      ||||||||||||||||||||||||||||
seq2  CTACTGTAACTTCCAAGCAAATGAATTC  1028