BAC Information

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BAC

Clone NameB6Ng01-206L03
Chromosome3 (Build37)
Map Location 103,385,432 - 103,386,522
singlet/doubletsinglet
Overlap geneSyt6
Upstream geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
Downstream geneAtg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622, Lrig2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206L03.bB6Ng01-206L03.g
ACCGA026047GA026048
length1,1021,088
definitionB6Ng01-206L03.b B6Ng01-206L03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataaatgaaataaaggtaggggaagggaccaggggattcttttt
tttctccatgtagttgctattcaattgcttctccatgtgacctccagctg
ccgttcccttgacacttatgcttagagaaggcaaaggggatggattactg
ggaatcagtgcctagcactcactcagtactggttatgaaaggacagtagg
gccaccccatgcctggagaatcttctcccaggactaggagaacctgaatt
ttggcatctcacaggcagacaatgcaaggagaattagactctggaaacca
agagtttatctgtacaggaggtgtaaggtggtgagggggaaagcaagaga
ggaatcagcaaagaggaggtggtaatcatagaggaataacgaaaaataac
tcagggaggtcttgacctcaggcagccttcaccacctagtgtgtcggtca
gctcgctatggttttgaatgcctgaggtctctggctcacaaagagaaatg
ttgactttggctcccagtttcagatgtttcctcctatgctctctcagtcc
ctctgtttggctcaaggccgcacatcatagtgggtacatgtggggaagcc
aaaccttttacatcatgaccaggaagcaagagagagggacagaaggagga
aggaattgtggtcctgatatccctgtaaagacaagatacaagacttgccc
ttaggcctcatttctggaaagctctacccctcccactttaggcccactta
ggaaccaagcttgcaacgtgtgggcctttgggcagacacgacagatccga
actccagcacctgcttacgggcatctgatttgggaagcaatagctgccaa
ccatagagccacctctgggagaggaaaaatgtggtccatctagttctgct
tttggagattataagctcaagaacatggtcctgaccaacggcaggaggct
ttttcctccttacttggggagcttggatttcacgacggtgtgaagaagaa
ctggcgtatcttcggggtgaggcaaccagagtagatgtcttgcaaaatgc
atccaccttctcttggctttctaatgtcacttccatcctcccagggtcac
ta
gaattcaaaagcagtgcgctaaattgtgtagcagaggaaatctcaggtct
gtggtgtggttgttgctcactgctcttgttcaactctatagcgaaagaag
agaacaacaaagaggagtgcacactgggaaagtgacaaggttgggttccc
tgaaaggaagccccgagaggtccctgcatgtaactgtgcaggtgaagccc
gcaaaggagatgccacactggggggatggttgtcagggaaagttgcaagc
atggtgtagagtctgaccaagggaaatgctatgtgtacttgtgtttctgc
tggctgaactggaggggttggggcaccaaaggtgtttggaacccagatga
accatcgtgatccctcgatgccagacatggagcttcagtctttgttctcc
tggatttccatcttacattggcccaatcttttattgctgtggtctcctca
ccactcctccattttgaaatgagaagatttattctgtatttatttatttg
tatagtggaagcctgtaaaaaaaaagtttgtcttaattctcagcagagac
tttgagcttttggatagcattgagattgttaagacattggggacttttag
ggataaattaaatacattttacattatgaaatgaagacgagactttaggg
ttcagggttggaatgctatggttaaaagtgacatgcttggatgtcagatt
gtcaggggctagacatcagctttgtctgtttctttgtggacacaatgtga
ccagctgcctcctgcttctgtcacagctagaactgctctcaatgccacat
ctttccccctgttccagcctacactgtccaactgtgagccagaatagacc
atgccttcttaagttgttttttgttggatttttctcacagcaatgagaaa
agttaacaacatagtgctgagtgaccaggtggcttaatgcatgtaagatt
ttattataaataggaggttttttgaggagctgggtatttctgcaccatac
tggagagtctgggtgaaggaggtgatgagttcagtgcttctctagcctgc
tacaggtgcaggtgcaagttgcaagctgcacaggtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_103385432_103386522
seq2: B6Ng01-206L03.b_47_1148 (reverse)

seq1  TAATGACCCTGTGAGGTAGGAAGTGACATTAGAAAGC--AGTGTAGGTGG  48
      || |||||||| ||||  |||||||||||||||||||  || | ||||||
seq2  TAGTGACCCTGGGAGGATGGAAGTGACATTAGAAAGCCAAGAGAAGGTGG  50

seq1  AATGCATTTTGC-AGACATCTACCCTGG-TGCC-CACCC--AAGATACCG  93
       ||||||||||| |||||||||| |||| |||| |||||  |||||| ||
seq2  -ATGCATTTTGCAAGACATCTACTCTGGTTGCCTCACCCCGAAGATA-CG  98

seq1  CCAGTGTTTCTTCACACC-TCGTGAAATCC-AGCTCCCC-AGTAAGGAG-  139
      |||||  ||||||||||| ||||||||||| |||||||| ||||||||| 
seq2  CCAGTTCTTCTTCACACCGTCGTGAAATCCAAGCTCCCCAAGTAAGGAGG  148

seq1  -AAAAGCCTCCTGCCGTTGTTCAGGACCATGTTCTTGAGCTTATAATCTC  188
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAAAGCCTCCTGCCGTTGGTCAGGACCATGTTCTTGAGCTTATAATCTC  198

seq1  C-AAAGCAGAACTAGATGGACCACATTTTTCCTCTCCCAGAGGTGGCTCT  237
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGAACTAGATGGACCACATTTTTCCTCTCCCAGAGGTGGCTCT  248

seq1  ATGGTTGGCAGCTATTGCTTCCCAAATCAGATGCCCGTAAGCAGGTGCTG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGCAGCTATTGCTTCCCAAATCAGATGCCCGTAAGCAGGTGCTG  298

seq1  GAGTTCGGATCTGTCGTGTCTGCCCAAAGGCCCACACGTTGCAAGCTTGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGGATCTGTCGTGTCTGCCCAAAGGCCCACACGTTGCAAGCTTGG  348

seq1  TTCCTAAGTGGGCCTAAAGTGGGAGGGGTAGAGCTTTCCAGAAATGAGGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGTGGGCCTAAAGTGGGAGGGGTAGAGCTTTCCAGAAATGAGGC  398

seq1  CTAAGGGCAAGTCTTGTATCTTGTCTTTACAGGGATATCAGGACCACAAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGCAAGTCTTGTATCTTGTCTTTACAGGGATATCAGGACCACAAT  448

seq1  TCCTTCCTCCTTCTGTCCCTCTCTCTTGCTTCCTGGTCATGATGTAAAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCCTTCTGTCCCTCTCTCTTGCTTCCTGGTCATGATGTAAAAG  498

seq1  GTTTGGCTTCCCCACATGTACCCACTATGATGTGCGGCCTTGAGCCAAAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTTCCCCACATGTACCCACTATGATGTGCGGCCTTGAGCCAAAC  548

seq1  AGAGGGACTGAGAGAGCATAGGAGGAAACATCTGAAACTGGGAGCCAAAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACTGAGAGAGCATAGGAGGAAACATCTGAAACTGGGAGCCAAAG  598

seq1  TCAACATTTCTCTTTGTGAGCCAGAGACCTCAGGCATTCAAAACCATAGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTTCTCTTTGTGAGCCAGAGACCTCAGGCATTCAAAACCATAGC  648

seq1  GAGCTGACCGACACACTAGGTGGTGAAGGCTGCCTGAGGTCAAGACCTCC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGACCGACACACTAGGTGGTGAAGGCTGCCTGAGGTCAAGACCTCC  698

seq1  CTGAGTTATTTTTCGTTATTCCTCTATGATTACCACCTCCTCTTTGCTGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTATTTTTCGTTATTCCTCTATGATTACCACCTCCTCTTTGCTGA  748

seq1  TTCCTCTCTTGCTTTCCCCCTCACCACCTTACACCTCCTGTACAGATAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTTGCTTTCCCCCTCACCACCTTACACCTCCTGTACAGATAAA  798

seq1  CTCTTGGTTTCCAGAGTCTAATTCTCCTTGCATTGTCTGCCTGTGAGATG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTTTCCAGAGTCTAATTCTCCTTGCATTGTCTGCCTGTGAGATG  848

seq1  CCAAAATTCAGGTTCTCCTAGTCCTGGGAGAAGATTCTCCAGGCATGGGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTCAGGTTCTCCTAGTCCTGGGAGAAGATTCTCCAGGCATGGGG  898

seq1  TGGCCCTACTGTCCTTTCATAACCAGTACTGAGTGAGTGCTAGGCACTGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTACTGTCCTTTCATAACCAGTACTGAGTGAGTGCTAGGCACTGA  948

seq1  TTCCCAGTAATCCATCCCCTTTGCCTTCTCTAAGCATAAGTGTCAAGGGA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTAATCCATCCCCTTTGCCTTCTCTAAGCATAAGTGTCAAGGGA  998

seq1  ACGGCAGCTGGAGGTCACATGGAGAAGCAATTGAATAGCAACTACATGGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGCTGGAGGTCACATGGAGAAGCAATTGAATAGCAACTACATGGA  1048

seq1  GAAAAAAAAGAATCCCCTGGTCCCTTCCCCTACCTTTATTTCATTTATGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAGAATCCCCTGGTCCCTTCCCCTACCTTTATTTCATTTATGA  1098

seq1  ATTC  1091
      ||||
seq2  ATTC  1102