BAC Information

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BAC

Clone NameB6Ng01-207A17
Chromosome3 (Build37)
Map Location 123,178,560 - 123,361,654
singlet/doubletdoublet
Overlap genePrss12, EG668804, Ndst3
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207A17.bB6Ng01-207A17.g
ACCGA026301GA026302
length9751,004
definitionB6Ng01-207A17.b B6Ng01-207A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,178,560 - 123,179,531)(123,360,671 - 123,361,654)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaagaacaccacagaccagaatcttctgc
ggcaaagctttatttcttacatcttcaggagccagggtgcaggaagcaag
agagcaagaagcaagagagagagaaaacgaaaccccgtccctttttaagg
agaattctccttcgcctcggacgtgtcactccttgattggctgcagccca
tcggccgagttgacgtcacggggaaggcagagcacaagtagtcataagat
acccttggcacatgcgcagattatttgtttaccacttagaacacagctgt
cagcgccatcttgtaacggcgaatgtgggcgcggctcccaacactcccta
gtactagtaagagaggcaggtcaaaggcaagcagcagggctcacactttt
atctgagaaattgcagtgcaatcgttcagattttggaatctggtatagtt
aagttatttggccccagagtaagggctcattcccagtcaacagggaacac
aggtctttgtgatctttttccttggggatagaaagcctttgccaaagttt
tgtattcagatagcatgaatactttaaatctgtgaaaaaatgtgacgtgt
aagaatgctttattgtccttgaatttgaccccttaggagctagaacatct
catgtaatcagtggccacaggtcactcttttcccgcttgaaatccatcct
gtcaccctattatttttgaaattgggtgtcctcttattcaattaaaatct
aataagatttctatccttggttattaaccagaattggtttggttgctgtt
atgtattgcaaatatttggttctaa
catgcaggctaacagtcagtctgccactgtttcacaggtcctggcagggg
tcagagagaacagcaatacccttcacaggtcctggcaggggtcgtggaga
acagcaatgcccgttaccataatagagtgccacacagagggctgtgctag
aggagaaaacgaacctctgaactctgagaagtcaaaccttttacagtgag
cagtaagcctgaaggatccttgaaaggacattgccaagtggaagcagttc
ctgctgatgcttacaaagcaagcagcatcctgggagcacggtgaatgcct
ttcagcaacactggagccttttcttcttggatatgtttagttctttaaag
ttgtcagcagcgagatggttcagcaggtacagacacttgctgctaagcct
catgacctgagttcaattactgggctccatgtggtggaaggagagacagc
tgtcctgtgattttcacacttgcacacacacacacacacacacacacaca
cacacacactaaatgaatataatatttttttggaagaatatattcactgt
aggttttacagatgacctggatgagtgctacaaatatataacccccaaac
ctagtctcttacaaaatgtcttcagctctttcctttaaattaaggaaact
tcaggttgtagtttgtgtatttactcagccttaatatgtctagtctcctg
aaacattaaataatcatttcttcattggaggaaagctgactatattaaat
gaggttaattcatatagagaatttctcacagatcctgggcacatactgta
tccctttacaaatgaattattaatttaactaaatttgagccgtaaagtaa
actgtgatgagtgatactcaatatctcctttcactaacttcgcctccaaa
gtagactccattccaagaagaaaacttgggagcttctggctagcccttct
taatattagaagccattttccaagataagaacataaaacgaaaatgatat
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123178560_123179531
seq2: B6Ng01-207A17.b_46_1020

seq1  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50

seq1  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100

seq1  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGAGTTTTTTCTCGTCCCGGAATTCGGCACCAATTGTTATTAGA  150

seq1  CGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200

seq1  GGCAAAGCTTTATTTCTTACATCTTCAGGAGCCAGGGTGCAGGAAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCTTTATTTCTTACATCTTCAGGAGCCAGGGTGCAGGAAGCAAG  250

seq1  AGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTTTTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAAGCAAGAGAGAGAGAAAACGAAACCCCGTCCCTTTTTAAGG  300

seq1  AGAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCA  350

seq1  TCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGAT  400

seq1  ACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGT  450

seq1  CAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACACTCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACACTCCCTA  500

seq1  GTACTAGTAAGAGAGGCAGGTCAAAGGCAAGCAGCAGGGCTCACACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGTAAGAGAGGCAGGTCAAAGGCAAGCAGCAGGGCTCACACTTTT  550

seq1  ATCTGAGAAATTGCAGTGCAATCGTTCAGATTTTGGAATCTGGTATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAAATTGCAGTGCAATCGTTCAGATTTTGGAATCTGGTATAGTT  600

seq1  AAGTTATTTGGCCCCAGAGTAAGGGCTCATTCCCAGTCAACAGGGAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTTGGCCCCAGAGTAAGGGCTCATTCCCAGTCAACAGGGAACAC  650

seq1  AGGTCTTTGTGATCTTTTTCCTTGGGGATAGAAAGCCTTTGCCAAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTGTGATCTTTTTCCTTGGGGATAGAAAGCCTTTGCCAAAGTTT  700

seq1  TGTATTCAGATAGCATGAATACTTTAAATCTGTGAAAAAATGTGACGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAGATAGCATGAATACTTTAAATCTGTGAAAAAATGTGACGTGT  750

seq1  AAGAATGCTTTATTGTCCTTGAATTTGACCCCTTAGGAGCTAGAACATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTTTATTGTCCTTGAATTTGACCCCTTAGGAGCTAGAACATCT  800

seq1  CATGTAATCAGTGGCCACAGGTCACTCTTTTCCCGCTTG-AATCCATCCT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGTAATCAGTGGCCACAGGTCACTCTTTTCCCGCTTGAAATCCATCCT  850

seq1  GTCACCCTATTATTTTTGAAATTGGTTGTTCTCTTATTCAA-TAAAATCT  898
      ||||||||||||||||||||||||| ||| ||||||||||| ||||||||
seq2  GTCACCCTATTATTTTTGAAATTGGGTGTCCTCTTATTCAATTAAAATCT  900

seq1  AATAAGATTCCTATCCTTGGTAATTACCAAGAATTGGTTTGGTTGCTGTT  948
      ||||||||| ||||||||||| |||| | |||||||||||||||||||||
seq2  AATAAGATTTCTATCCTTGGTTATTAACCAGAATTGGTTTGGTTGCTGTT  950

seq1  ATGTATTGCAAATATTT-GTTCTAA  972
      ||||||||||||||||| |||||||
seq2  ATGTATTGCAAATATTTGGTTCTAA  975

seq1: chr3_123360671_123361654
seq2: B6Ng01-207A17.g_74_1077 (reverse)

seq1  AAAAATATCATTTTC--TTTAT-CTCTTTTCTT-GAAAAT-GCTTCT-AT  44
      |||||||||||||||  |||||  |||| |||| |||||| |||||| ||
seq2  AAAAATATCATTTTCGTTTTATGTTCTTATCTTGGAAAATGGCTTCTAAT  50

seq1  ACTAAGA--GGCTAGCCAG-AGCTCCCAAGTTT--CTCCTGGAAATGAGT  89
      | |||||  |||||||||| |||||||||||||   || |||||  ||||
seq2  ATTAAGAAGGGCTAGCCAGAAGCTCCCAAGTTTTCTTCTTGGAATGGAGT  100

seq1  CTAC-TTGGAGGCG-AGTTAGTG-AAGGAGATATTGAGTATCACTCATCA  136
      |||| ||||||||| |||||||| ||||||||||||||||||||||||||
seq2  CTACTTTGGAGGCGAAGTTAGTGAAAGGAGATATTGAGTATCACTCATCA  150

seq1  CAGTTTAC-TTACGGCTC-AATTTAGTTAAAATTATTATTCATTTGT-AA  183
      |||||||| ||||||||| |||||||||||| | || |||||||||| ||
seq2  CAGTTTACTTTACGGCTCAAATTTAGTTAAATTAATAATTCATTTGTAAA  200

seq1  TGGATACAGTATGTG-CCAGGATCTGTGAGAAATTCTCTATATGAATT-A  231
       |||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  GGGATACAGTATGTGCCCAGGATCTGTGAGAAATTCTCTATATGAATTAA  250

seq1  CCTCATTTAATATAGTCAGCTTTCCTCCAATGAAG-AATGATTATTTAAT  280
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTCATTTAATATAGTCAGCTTTCCTCCAATGAAGAAATGATTATTTAAT  300

seq1  GTTTCAGGAGACTAGACATATTAAGGCTGAGTAAATACACAAACTACAAC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGAGACTAGACATATTAAGGCTGAGTAAATACACAAACTACAAC  350

seq1  CTGAAGTTTCCTTAATTTAAAGGAAAGAGCTGAAGACATTTTGTAAGAGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTTCCTTAATTTAAAGGAAAGAGCTGAAGACATTTTGTAAGAGA  400

seq1  CTAGGTTTGGGGGTTATATATTTGTAGCACTCATCCAGGTCATCTGTAAA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTGGGGGTTATATATTTGTAGCACTCATCCAGGTCATCTGTAAA  450

seq1  ACCTACAGTGAATATATTCTTCCAAAAAAATATTATATTCATTTAGTGTG  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGTGAATATATTCTTCCAAAAAAATATTATATTCATTTAGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAGTGTGAAAATCACAG  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAGTGTGAAAATCACAG  550

seq1  GACAGCTGTCTCTCCTTCCACCACATGGAGCCCAGTAATTGAACTCAGGT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGTCTCTCCTTCCACCACATGGAGCCCAGTAATTGAACTCAGGT  600

seq1  CATGAGGCTTAGCAGCAAGTGTCTGTACCTGCTGAACCATCTCGCTGCTG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCTTAGCAGCAAGTGTCTGTACCTGCTGAACCATCTCGCTGCTG  650

seq1  ACAACTTTAAAGAACTAAACATATCCAAGAAGAAAAGGCTCCAGTGTTGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTAAAGAACTAAACATATCCAAGAAGAAAAGGCTCCAGTGTTGC  700

seq1  TGAAAGGCATTCACCGTGCTCCCAGGATGCTGCTTGCTTTGTAAGCATCA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCATTCACCGTGCTCCCAGGATGCTGCTTGCTTTGTAAGCATCA  750

seq1  GCAGGAACTGCTTCCACTTGGCAATGTCCTTTCAAGGATCCTTCAGGCTT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACTGCTTCCACTTGGCAATGTCCTTTCAAGGATCCTTCAGGCTT  800

seq1  ACTGCTCACTGTAAAAGGTTTGACTTCTCAGAGTTCAGAGGTTCGTTTTC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCACTGTAAAAGGTTTGACTTCTCAGAGTTCAGAGGTTCGTTTTC  850

seq1  TCCTCTAGCACAGCCCTCTGTGTGGCACTCTATTATGGTAACGGGCATTG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGCACAGCCCTCTGTGTGGCACTCTATTATGGTAACGGGCATTG  900

seq1  CTGTTCTCCACGACCCCTGCCAGGACCTGTGAAGGGTATTGCTGTTCTCT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCCACGACCCCTGCCAGGACCTGTGAAGGGTATTGCTGTTCTCT  950

seq1  CTGACCCCTGCCAGGACCTGTGAAACAGTGGCAGACTGACTGTTAGCCTG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCTGCCAGGACCTGTGAAACAGTGGCAGACTGACTGTTAGCCTG  1000

seq1  CATG  984
      ||||
seq2  CATG  1004