BAC Information

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BAC

Clone NameB6Ng01-207C01
Chromosome3 (Build37)4 (Build37)
Map Location 56,527,138 - 56,528,316150,659,339 - 150,659,518
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207C01.bB6Ng01-207C01.g
ACCGA026363GA026364
length1,166263
definitionB6Ng01-207C01.b B6Ng01-207C01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,527,138 - 56,528,316)(150,659,339 - 150,659,518)
sequence
gaattctaaattctatgggatgaatttatacttgctctcagatgtaatcc
ttacatagtctctttttttagggataggttgttttttctgtagtataaat
taggaaatggaggctaggaaaacaagaatacaagaatagaatacaaggtc
acacattttgccaatatatctgtaaccatcataaaaattcttctttccat
acaagaggtatattacacttttattgtatgtatgtatatctatatctata
tatctatatctatatatgtatatatatatacacacacatacacacatata
taattatatatttgtataaagtattgtatatgtatatatgcattgtacat
attgtatatatgtataaaggcagtttatttcaatcataataagtataaat
gatttattcaccattgacaagaaagaaaaagggctaaataaagcatggaa
ttaggggacatggttaacagttcagaatactggctgttttttcagaagac
ttgggtttggttcccagatcctacatagcagctcacaaccattggtaact
ctagttctaaggaatccatttaatttttctggcttcttctgcaccaggca
tgcacacagtgcacatacacacattcaggcaaaacagtcacatacataaa
attttaaaaatctaataatttaaataatttaatgccatggactgaactca
gtgggtccttcaattcacagggtaagtcagggttctggatctcaggtggg
caaggattcagcgaaatgacaaacagacatggacacaagggagtgctgta
tctgaatgtaatttctcaaagtgagcatcagactaagatcaagctggaca
tattacaaaagaaaacaaaaaagtgctacgtcagctaaggtacattgaag
ttatcctgtgtataatgacacaaaacagagaaatgcatacataaagacta
gccggaaccaggcagtgtttacaactgagatagatcagccctatctaaag
tcagctatctagagccaggtgaaacggctatatgccaataataattctag
tctattgtttaccaccaccagcatccctttagttaaatacttatatgcta
tcctcttggccttagtgaaaaaatacaccaggcaggttcaggtcatagcc
tttcatgaataaccga

acagagtctttgaaccaatgcacaaggcctgtataggttctagcagtgtt
ccagcatggtgaagggaaagtggatacacaaagtcccaaccctaaccaaa
atgctactatatatatatatatatatatatatatatatatatatatatat
atatatatatgtatatatatatatatatatatatatgggtatatgtgtat
atatatatatatatatatatatagacagagagagagagatatatgtgtgt
gtgtgtatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56527138_56528316
seq2: B6Ng01-207C01.b_43_1208

seq1  GAATTCTAAATTCTATGGGATGAATTTATACTTGCTCTCAGATGTAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATTCTATGGGATGAATTTATACTTGCTCTCAGATGTAATCC  50

seq1  TTACATAGTCTCTTTTTTTAGGGATAGGTTGTTTTTTCTGTAGTATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTCTCTTTTTTTAGGGATAGGTTGTTTTTTCTGTAGTATAAAT  100

seq1  TAGGAAATGGAGGCTAGGAAAACAAGAATACAAGAATAGAATACAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGGAGGCTAGGAAAACAAGAATACAAGAATAGAATACAAGGTC  150

seq1  ACACATTTTGCCAATATATCTGTAACCATCATAAAAATTCTTCTTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTGCCAATATATCTGTAACCATCATAAAAATTCTTCTTTCCAT  200

seq1  ACAAGAGGTATATTACACTTTTATTGTATGTATGTATATCTATATCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGTATATTACACTTTTATTGTATGTATGTATATCTATATCTATA  250

seq1  TATCTATATCTATATATGTATATATATATACACACACATACACACATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATATCTATATATGTATATATATATACACACACATACACACATATA  300

seq1  TAATTATATATTTGTATAAAGTATTGTATATGTATATATGCATTGTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATATATTTGTATAAAGTATTGTATATGTATATATGCATTGTACAT  350

seq1  ATTGTATATATGTATAAAGGCAGTTTATTTCAATCATAATAAGTATAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATATGTATAAAGGCAGTTTATTTCAATCATAATAAGTATAAAT  400

seq1  GATTTATTCACCATTGACAAGAAAGAAAAAGGGCTAAATAAAGCATGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTCACCATTGACAAGAAAGAAAAAGGGCTAAATAAAGCATGGAA  450

seq1  TTAGGGGACATGGTTAACAGTTCAGAATACTGGCTGTTTTTTCAGAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGACATGGTTAACAGTTCAGAATACTGGCTGTTTTTTCAGAAGAC  500

seq1  TTGGGTTTGGTTCCCAGATCCTACATAGCAGCTCACAACCATTGGTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTGGTTCCCAGATCCTACATAGCAGCTCACAACCATTGGTAACT  550

seq1  CTAGTTCTAAGGAATCCATTTAATTTTTCTGGCTTCTTCTGCACCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTAAGGAATCCATTTAATTTTTCTGGCTTCTTCTGCACCAGGCA  600

seq1  TGCACACAGTGCACATACACACATTCAGGCAAAACAGTCACATACATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAGTGCACATACACACATTCAGGCAAAACAGTCACATACATAAA  650

seq1  ATTTTAAAAATCTAATAATTTAAATAATTTAATGCCATGGACTGAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAATCTAATAATTTAAATAATTTAATGCCATGGACTGAACTCA  700

seq1  GTGGGTCCTTCAATTCACAGGGTAAGTCAGGGTTCTGGATCTCAGGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCCTTCAATTCACAGGGTAAGTCAGGGTTCTGGATCTCAGGTGGG  750

seq1  CAAGGATTCAGCGAAATGACAAACAGACATGGACACAAGGGAGTGCTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTCAGCGAAATGACAAACAGACATGGACACAAGGGAGTGCTGTA  800

seq1  TCTGAATGTAATTTCTCAAAGTGAGCATCAGACTAAGATCAAGCTGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGTAATTTCTCAAAGTGAGCATCAGACTAAGATCAAGCTGGACA  850

seq1  TATTACAAAAGAAAACAAAAAAGTGCTACGTCAGCTAAGGTACATTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAAGAAAACAAAAAAGTGCTACGTCAGCTAAGGTACATTGAAG  900

seq1  TTATCCTGTGTATAATGACACAAAACAGAGAAATGCATACATAAAGACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGTGTATAATGACACAAAACAGAGAAATGCATACATAAAGACTA  950

seq1  GCCGGAACCAGGCAGTGTTTACAACTGAGATAAGATCAGCCCTATCTAAA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCGGAACCAGGCAGTGTTTACAACTGAGAT-AGATCAGCCCTATCTAAA  999

seq1  GTCAGCTATTCTTAGGAGCCAGGTGAAAGGGCTAATATGCCCAATAATAA  1050
      |||||||| |||   ||||||||||||| |||| ||||| ||||||||||
seq2  GTCAGCTA-TCT--AGAGCCAGGTGAAACGGCT-ATATG-CCAATAATAA  1044

seq1  TTCTAGTCTATTGTTTAACCCACCACCAGGCATCCC-TTAG-TAAATACC  1098
      |||||||||||||||||  ||||||||| ||||||| |||| ||||||| 
seq2  TTCTAGTCTATTGTTTA--CCACCACCA-GCATCCCTTTAGTTAAATACT  1091

seq1  TAATTATGCTATTCCTCTGGGCC-TAGTGAAAAAAATACACCAGGGAAGT  1147
      ||  ||||||| |||||| |||| ||||| ||||||||||||||| | ||
seq2  TA--TATGCTA-TCCTCTTGGCCTTAGTG-AAAAAATACACCAGGCAGGT  1137

seq1  TCAGTTCTACTAGCCTTTTCATGAATAACAGA  1179
      |||| ||   ||||| ||||||||||||| ||
seq2  TCAGGTC--ATAGCC-TTTCATGAATAACCGA  1166


seq1: chr4_150659339_150659518
seq2: B6Ng01-207C01.g_181_332

seq1  TATATATAGTATATAGTATATATAGTAATATATAAGTATATATACAGTAT  50
      |||||||| |||||| |||||||    |||||||  ||||||||   |||
seq2  TATATATA-TATATA-TATATAT----ATATATATATATATATA---TAT  41

seq1  ATACAGCATATATAGTATATACACAATATATACACTATAGTATATACAGT  100
      ||     |||||| ||||||     |||||||   |||| ||||||    
seq2  AT-----ATATAT-GTATAT-----ATATATA---TATA-TATATA----  72

seq1  GTGTATGTGTATATGTGTATATATATGTATATGTGTATGTGT------AT  144
         |||| |||||||||||||||||| ||||| | ||| | |      | 
seq2  ---TATGGGTATATGTGTATATATATATATATATATATATATAGACAGAG  119

seq1  ATATACATATATGTGTGTGTGTGTGTATGGTATATA  180
      | | | | |||| ||||||||||||||   ||||||
seq2  AGAGAGAGATATATGTGTGTGTGTGTA---TATATA  152


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