BAC Information

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BAC

Clone NameB6Ng01-207E21
Chromosome3 (Build37)
Map Location 28,843,978 - 28,962,027
singlet/doubletdoublet
Overlap genenone
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream gene6130401L20Rik, LOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207E21.bB6Ng01-207E21.g
ACCGA026496GA026497
length1,0691,154
definitionB6Ng01-207E21.b B6Ng01-207E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,843,978 - 28,845,038)(28,960,859 - 28,962,027)
sequence
gaattctttatattctgtagatactggccttttgtgagttgtgaagatgt
tttctcattctgtagtgtgtctaatcactggaatgatagtttcctttgct
atacagaagctttttggtttcataatgtactatttatcattcttaatgcc
cgtattaccagggtattggagtctgctcagaaagtcctctcttgtacctg
taagttcaagtgtattcctcatttctatcaggttcaggctattattactt
attctgaggtcattgacccatttagaggtgagttttgtgctggatgacag
agaaggatgtaggctcattctttcacatgtagctatccaaagtgatttac
ctctttacatttaggaaataaattataaattcaatgcaacactcatctga
ttaatttttttcttaatagacaagtaaggctgggataacctctggcatat
aaaatacttgctacacaccatgatgtctcaagttcaaattcccagaaccc
acattaaacaaaacaaagaaaacaaaacaagtcggtgttgagatctttat
gtagtcatatctctaggaacggagagacaagggtccatggagcaataaag
ctagccagagtagctgaagcagtcaggtgtgggttcaatatgttaaggtg
gaacatgatcaaggaagatatccagtatcaacctcatgcctccctagaca
tgtttacctacttatatacatacatccacatatgagaatatgcatataca
cacaagtacacaacacacacacacacacacacacacacacacacacacac
atacataaaattacatagctgctgggtatggtggtggatgccttagtctc
agcacttgggaggcagaggcaagcagatctacccccacccatcctggtct
acaatgcaagtgccagtatgggccacagctacataaaggaaaacttgcca
cacactctggtggagtcagcttgacaggcgaagctgggaagctatcttgt
gaagaaaaagagttcaagttcccctccttagagtctggtgaatccccctt
aacccataaaaattaattt

gaattctccttttataggatgatagctactcaccctgaagagagcagtgg
agaaaatggccctacattaaagagctagaaatggtacctgaaatacatgt
taaaagatttgaaaatagctttaccactgtggcagaaatagtgtcatgat
tttacttccagacactcctctctccctctgctgaagctgcaataccattg
gctcaatcccttggcatttgatgcgtgtccagcaaacaggtggaaattca
caatgtactgattgtcacaccccagccgcagttgggaaacattcaaggaa
gctggttctgtttgccgctgttctttaacagagacataccgtaaacagta
tgtttgtctctgtgatgtgaaggtaaatgtcacatgtcgaaattcaagac
tgaacaatgttctcttaggcaggggagggatgctacaggaagaaatgttg
cccacatgcagagtgacttctaatagtttattgatctcactgtttagcat
cccctttcggaggatgtgttaaccaaaaccctgtgaggctgtgaaatctc
agagtgctttctgtgactagacactcacaacagagaataatgtatcgaca
cccacatttcaaacaaaggcacaccaagtgttcatattaatgctttagat
tgatataaaacctttcttctgaaaagcacagagcacttccataaaaatac
attattgagatttttaacaagtaggactgcatagagcagtgtgttaagct
gagatgaaacctaaagtttcctgatttccaatctagtactacaaagacat
aatcaatagatgtcctttcagcttccaaaaatgccaaaaattatcaattc
tgtctgtataagatttgggaaaggttatattttagagaaaggcttaaaag
taatctagggaaaaattaaaaaatcaattgggtaggaattcagtgacttt
attttcagctaagattgaatctgttttgtcatcccaaagaccaataattg
atgtaaagaaatatcaataaaatagatgtttttctagtcactatgcaaat
attgtaaaatgagccacacttctattaataatccagcatatttccatgat
tttacctaaggtaagttcacagctttagaccatatagattcactgtgtgt
aagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28843978_28845038
seq2: B6Ng01-207E21.b_44_1112

seq1  GAATTCTTTATATTCTGTAGATACTGGCCTTTTGTGAGTTGTGAAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATTCTGTAGATACTGGCCTTTTGTGAGTTGTGAAGATGT  50

seq1  TTTCTCATTCTGTAGTGTGTCTAATCACTGGAATGATAGTTTCCTTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTCTGTAGTGTGTCTAATCACTGGAATGATAGTTTCCTTTGCT  100

seq1  ATACAGAAGCTTTTTGGTTTCATAATGTACTATTTATCATTCTTAATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGCTTTTTGGTTTCATAATGTACTATTTATCATTCTTAATGCC  150

seq1  CGTATTACCAGGGTATTGGAGTCTGCTCAGAAAGTCCTCTCTTGTACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTACCAGGGTATTGGAGTCTGCTCAGAAAGTCCTCTCTTGTACCTG  200

seq1  TAAGTTCAAGTGTATTCCTCATTTCTATCAGGTTCAGGCTATTATTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCAAGTGTATTCCTCATTTCTATCAGGTTCAGGCTATTATTACTT  250

seq1  ATTCTGAGGTCATTGACCCATTTAGAGGTGAGTTTTGTGCTGGATGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGTCATTGACCCATTTAGAGGTGAGTTTTGTGCTGGATGACAG  300

seq1  AGAAGGATGTAGGCTCATTCTTTCACATGTAGCTATCCAAAGTGATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATGTAGGCTCATTCTTTCACATGTAGCTATCCAAAGTGATTTAC  350

seq1  CTCTTTACATTTAGGAAATAAATTATAAATTCAATGCAACACTCATCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACATTTAGGAAATAAATTATAAATTCAATGCAACACTCATCTGA  400

seq1  TTAATTTTTTTCTTAATAGACAAGTAAGGCTGGGATAACCTCTGGCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTCTTAATAGACAAGTAAGGCTGGGATAACCTCTGGCATAT  450

seq1  AAAATACTTGCTACACACCATGATGTCTCAAGTTCAAATTCCCAGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTGCTACACACCATGATGTCTCAAGTTCAAATTCCCAGAACCC  500

seq1  ACATTAAACAAAACAAAGAAAACAAAACAAGTCGGTGTTGAGATCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAACAAAACAAAGAAAACAAAACAAGTCGGTGTTGAGATCTTTAT  550

seq1  GTAGTCATATCTCTAGGAACGGAGAGACAAGGGTCCATGGAGCAATAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCATATCTCTAGGAACGGAGAGACAAGGGTCCATGGAGCAATAAAG  600

seq1  CTAGCCAGAGTAGCTGAAGCAGTCAGGTGTGGGTTCAATATGTTAAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAGAGTAGCTGAAGCAGTCAGGTGTGGGTTCAATATGTTAAGGTG  650

seq1  GAACATGATCAAGGAAGATATCCAGTATCAACCTCATGCCTCCCTAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGATCAAGGAAGATATCCAGTATCAACCTCATGCCTCCCTAGACA  700

seq1  TGTTTACCTACTTATATACATACATCCACATATGAGAATATGCATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCTACTTATATACATACATCCACATATGAGAATATGCATATACA  750

seq1  CACAAGTACACAACACACACACACACACACACACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTACACAACACACACACACACACACACACACACACACACACACAC  800

seq1  ATACATAAAATTACATAGCTGCTGGGTATGGTGGTGGATGCCTTAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAAATTACATAGCTGCTGGGTATGGTGGTGGATGCCTTAGTCTC  850

seq1  AGCACTTGGGAGGCAGAGGCAAGCAGATCTACCCC--ACCATCCTGGTCT  898
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AGCACTTGGGAGGCAGAGGCAAGCAGATCTACCCCCACCCATCCTGGTCT  900

seq1  ACAATGCAAGTGCCAGTAT-GGCCACAGCTACATAAA-GAAAACTTGCCA  946
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  ACAATGCAAGTGCCAGTATGGGCCACAGCTACATAAAGGAAAACTTGCCA  950

seq1  CACACTCTGGTGGAGTCAGCTTGACAGGCGAAAGCTTGGAAGCTATCTTG  996
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  CACACTCTGGTGGAGTCAGCTTGACAGGCG-AAGCTGGGAAGCTATCTTG  999

seq1  TG-AGGAAAAGAGTTTCAAGTT-CCCTCC-TAGAGTCTGGTG-ATCCCCC  1042
      || || ||||||| |||||||| |||||| |||||||||||| |||||||
seq2  TGAAGAAAAAGAG-TTCAAGTTCCCCTCCTTAGAGTCTGGTGAATCCCCC  1048

seq1  -TAACCCAT-AAAATTAATTT  1061
       |||||||| |||||||||||
seq2  TTAACCCATAAAAATTAATTT  1069


seq1: chr3_28960859_28962027
seq2: B6Ng01-207E21.g_62_1215 (reverse)

seq1  CCTTA-ACACAGTGAATCCTTATATTGTTCTTAAAGACTGGTGGAACTTA  49
      ||||| ||||||||||||  ||||| ||   ||||| |||   |||||||
seq2  CCTTACACACAGTGAATC--TATATGGT--CTAAAG-CTG--TGAACTTA  43

seq1  CCTTTAGTTAAAAATCCATTGAAATATGCTGAATTAATAATAGAAAGTGT  99
      || |||| |||||   ||| ||||||||||| |||| |||||| ||||||
seq2  CC-TTAGGTAAAA--TCATGGAAATATGCTGGATTATTAATAG-AAGTGT  89

seq1  GCCTCATTTTTACAATATTTTGCATAGTGACTAG-AAAACATCTATTTTA  148
      | |||| |||||||||| |||||||||||||||| |||||||||||||||
seq2  GGCTCA-TTTTACAATA-TTTGCATAGTGACTAGAAAAACATCTATTTTA  137

seq1  TTGATATTTCTTTAACATTCAAATTATTGGTCTTTGGGATGACAAAACAG  198
      ||||||||||||| ||||   |||||||||||||||||||||||||||||
seq2  TTGATATTTCTTT-ACAT--CAATTATTGGTCTTTGGGATGACAAAACAG  184

seq1  ATTTCAATTCTTAGCTGAAAAATAAAGTCACTTGAATTCCTACCCAATTG  248
      | ||||| ||||||||| ||||||||||||| ||||||||||||||||||
seq2  A-TTCAA-TCTTAGCTG-AAAATAAAGTCAC-TGAATTCCTACCCAATTG  230

seq1  ATTTTTTAATTTTT-CCTAGATTACTTTTAAGCC-TTCTCTAAAATATAA  296
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  ATTTTTTAATTTTTCCCTAGATTACTTTTAAGCCTTTCTCTAAAATATAA  280

seq1  CCTTT-CCAAATCTTATACAGACAGAATTGATAATTTTTGGCATTTTTGG  345
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCAAATCTTATACAGACAGAATTGATAATTTTTGGCATTTTTGG  330

seq1  AAGCTGAAAGGACATCTATTGATTATGTCTTTGTAGTACTAGATTGGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAAGGACATCTATTGATTATGTCTTTGTAGTACTAGATTGGAAA  380

seq1  TCAGGAAACTTTAGGTTTCATCTCAGCTTAACACACTGCTCTATGCAGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAACTTTAGGTTTCATCTCAGCTTAACACACTGCTCTATGCAGTC  430

seq1  CTACTTGTTAAAAATCTCAATAATGTATTTTTATGGAAGTGCTCTGTGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTTAAAAATCTCAATAATGTATTTTTATGGAAGTGCTCTGTGCT  480

seq1  TTTCAGAAGAAAGGTTTTATATCAATCTAAAGCATTAATATGAACACTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGAAAGGTTTTATATCAATCTAAAGCATTAATATGAACACTTG  530

seq1  GTGTGCCTTTGTTTGAAATGTGGGTGTCGATACATTATTCTCTGTTGTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTTTGTTTGAAATGTGGGTGTCGATACATTATTCTCTGTTGTGA  580

seq1  GTGTCTAGTCACAGAAAGCACTCTGAGATTTCACAGCCTCACAGGGTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAGTCACAGAAAGCACTCTGAGATTTCACAGCCTCACAGGGTTTT  630

seq1  GGTTAACACATCCTCCGAAAGGGGATGCTAAACAGTGAGATCAATAAACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACACATCCTCCGAAAGGGGATGCTAAACAGTGAGATCAATAAACT  680

seq1  ATTAGAAGTCACTCTGCATGTGGGCAACATTTCTTCCTGTAGCATCCCTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGTCACTCTGCATGTGGGCAACATTTCTTCCTGTAGCATCCCTC  730

seq1  CCCTGCCTAAGAGAACATTGTTCAGTCTTGAATTTCGACATGTGACATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTAAGAGAACATTGTTCAGTCTTGAATTTCGACATGTGACATTT  780

seq1  ACCTTCACATCACAGAGACAAACATACTGTTTACGGTATGTCTCTGTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACATCACAGAGACAAACATACTGTTTACGGTATGTCTCTGTTAA  830

seq1  AGAACAGCGGCAAACAGAACCAGCTTCCTTGAATGTTTCCCAACTGCGGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCGGCAAACAGAACCAGCTTCCTTGAATGTTTCCCAACTGCGGC  880

seq1  TGGGGTGTGACAATCAGTACATTGTGAATTTCCACCTGTTTGCTGGACAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGACAATCAGTACATTGTGAATTTCCACCTGTTTGCTGGACAC  930

seq1  GCATCAAATGCCAAGGGATTGAGCCAATGGTATTGCAGCTTCAGCAGAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAATGCCAAGGGATTGAGCCAATGGTATTGCAGCTTCAGCAGAGG  980

seq1  GAGAGAGGAGTGTCTGGAAGTAAAATCATGACACTATTTCTGCCACAGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGAGTGTCTGGAAGTAAAATCATGACACTATTTCTGCCACAGTG  1030

seq1  GTAAAGCTATTTTCAAATCTTTTAACATGTATTTCAGGTACCATTTCTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTATTTTCAAATCTTTTAACATGTATTTCAGGTACCATTTCTAG  1080

seq1  CTCTTTAATGTAGGGCCATTTTCTCCACTGCTCTCTTCAGGGTGAGTAGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAATGTAGGGCCATTTTCTCCACTGCTCTCTTCAGGGTGAGTAGC  1130

seq1  TATCATCCTATAAAAGGAGAATTC  1169
      ||||||||||||||||||||||||
seq2  TATCATCCTATAAAAGGAGAATTC  1154


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