BAC Information

Click to search

BAC

Clone NameB6Ng01-207F09
Chromosome3 (Build37)
Map Location 141,290,254 - 141,356,378
singlet/doubletdoublet
Overlap geneUnc5c
Upstream geneLOC621343, 4930590L14Rik, Pdha2, LOC100039923
Downstream geneBmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207F09.bB6Ng01-207F09.g
ACCGA026520GA026521
length1,053969
definitionB6Ng01-207F09.b B6Ng01-207F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,355,322 - 141,356,378)(141,290,254 - 141,291,216)
sequence
gaattcagcataaagtggacatatcacatccagcatgtttgtgcttagat
cattcctgtgtacatttatatgcatattattcatctataattttcttttt
atcttcaagatggcatgtgcatgcgtcatatccaatatattcctttttag
ctatactactgtcaggatccactgacttctgcactgttgaataaattggt
agttaataaatgtccttggaaatatactcagagataaataatacgctgct
atatctaatcataagtgtacatccagtgtacacgtttactctcagaatcc
taagatacctttacttagtctatgcatccagggaataaaggagtagtaat
tatagatcaggcttgtaacagagcctcctttataactctgaatacatatg
tggcatacaacaaaaagttcatgactgctcaaaatcctctactgctaaag
aaatgccaaatgattactgggatcaccatttccattatgattgctctatg
tcttaaatccaaggtcttatgttgtggactcatcctaatggtaggcaaat
ctatgggactttcatgtttatagccctccactgttaccctctttaaagca
cttttgtctctagcaaggtgatatgatgaggagacaggaaggaaagaaga
gttgaaaccacatataatatacaaagaaacatgtgtgctccctgaaatat
acaaataatactaaggttggggtatagccagagtggagctattgaaatgg
caatataaacactactgtctccttgataattttcatgtgctcattacatt
ccacaactctgtaactgaaattcagattcctcaatctatcttatatgtgc
cacttcatcctctctcgaggtttcctgctacccagaagggtttcaggttt
gttgtgaactcctagcaatcccttgaaataccatcttcattacacgaagg
accgggctccaataatgttggaggatccctactatttctgatgtccttga
tagaaagctaactgttaaaacataaaccagaagccaacgtttaaaaaaaa
aaa
gaattcccaactgggaaatgagagagtgcttagggcagaattttttcagc
attttttttctaccttacaaagaattttacagaaaaaaaacaaaggcacc
cttaactggtagactctagaaacacttcactgtgtaatgtatacacttgt
taattgctgttattattagagaaatgagtgttctatgactatcaagggag
tggatggaaaggaagttgaaagcttaactgtggagtcagattggctgtgt
ttgtatcctgctaacaccatgttcaaattgtgtgagtttgtcctgttact
tcccacttcagccttccatttcccaattcaggaatggagacagcacgagg
attcttagggaataaattacatgagaatatgaatgtctatggcacaagta
ttctagatatgaatgtgactttgtagtctactagcatcataaacatcatt
acatcttggacccatctccaacagttataaaaaaaaggaagcagttgcag
gaagcatggtgaaataaatgcgaaggcataaaccggcaaaagttagcagc
ccaaagccccacgtctgatttctttgttggctgttttcagttagtacacg
ttatctttcaagaagcaaattggattgtttgtcagttttactggaggatt
ctgatttttccacctgttccgagatgactactttgcatctgttttgatac
acaaatttataaacaaattctctaacaccattctatgaataatagatcag
acttttaatcaaggtatggtttcatgttccaaaaattatagcaaagataa
acaccatgaaactacattggctagttttatgttgtgtcagctggggtaaa
ttactatccttttttgctgtctgattattggtgtttgggagttgtttttt
taatttatgtcatcccttcatggtccctggatcctatttcctcagcatcc
ttttactgtattattgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141355322_141356378
seq2: B6Ng01-207F09.b_51_1103 (reverse)

seq1  TTTTTTTTTTTAAACGTTGCCTTCTGGTTTATGTTTTAACCAGTAAGCTT  50
      ||||||||||||||||||| ||||||||||||||||||| |||| |||||
seq2  TTTTTTTTTTTAAACGTTGGCTTCTGGTTTATGTTTTAA-CAGTTAGCTT  49

seq1  TCTATCAAGGACATCAGAAATAGTAGGGATCCTCCAACATTATTGGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAAGGACATCAGAAATAGTAGGGATCCTCCAACATTATTGGAGCC  99

seq1  CGGGTCCCTTCGTTGTAATGAAGATGGTATTTCAAGGGATTGCTAGGAGT  150
      |||   |||||| |||||||||||||||||||||||||||||||||||||
seq2  CGG--TCCTTCG-TGTAATGAAGATGGTATTTCAAGGGATTGCTAGGAGT  146

seq1  TCACAACAAACCTGAAACCCTTCTGGGTAGCAGGAAACCTCGAGAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAAACCTGAAACCCTTCTGGGTAGCAGGAAACCTCGAGAGAGGA  196

seq1  TGAAGTGGCACATATAAGATAGATTGAGGAATCTGAATTTCAGTTACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGCACATATAAGATAGATTGAGGAATCTGAATTTCAGTTACAGA  246

seq1  GTTGTGGAATGTAATGAGCACATGAAAATTATCAAGGAGACAGTAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGAATGTAATGAGCACATGAAAATTATCAAGGAGACAGTAGTGTT  296

seq1  TATATTGCCATTTCAATAGCTCCACTCTGGCTATACCCCAACCTTAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCCATTTCAATAGCTCCACTCTGGCTATACCCCAACCTTAGTAT  346

seq1  TATTTGTATATTTCAGGGAGCACACATGTTTCTTTGTATATTATATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATATTTCAGGGAGCACACATGTTTCTTTGTATATTATATGTGG  396

seq1  TTTCAACTCTTCTTTCCTTCCTGTCTCCTCATCATATCACCTTGCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACTCTTCTTTCCTTCCTGTCTCCTCATCATATCACCTTGCTAGAG  446

seq1  ACAAAAGTGCTTTAAAGAGGGTAACAGTGGAGGGCTATAAACATGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGCTTTAAAGAGGGTAACAGTGGAGGGCTATAAACATGAAAGT  496

seq1  CCCATAGATTTGCCTACCATTAGGATGAGTCCACAACATAAGACCTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGATTTGCCTACCATTAGGATGAGTCCACAACATAAGACCTTGGA  546

seq1  TTTAAGACATAGAGCAATCATAATGGAAATGGTGATCCCAGTAATCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGACATAGAGCAATCATAATGGAAATGGTGATCCCAGTAATCATTT  596

seq1  GGCATTTCTTTAGCAGTAGAGGATTTTGAGCAGTCATGAACTTTTTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCTTTAGCAGTAGAGGATTTTGAGCAGTCATGAACTTTTTGTTG  646

seq1  TATGCCACATATGTATTCAGAGTTATAAAGGAGGCTCTGTTACAAGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACATATGTATTCAGAGTTATAAAGGAGGCTCTGTTACAAGCCTG  696

seq1  ATCTATAATTACTACTCCTTTATTCCCTGGATGCATAGACTAAGTAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATTACTACTCCTTTATTCCCTGGATGCATAGACTAAGTAAAGG  746

seq1  TATCTTAGGATTCTGAGAGTAAACGTGTACACTGGATGTACACTTATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGGATTCTGAGAGTAAACGTGTACACTGGATGTACACTTATGAT  796

seq1  TAGATATAGCAGCGTATTATTTATCTCTGAGTATATTTCCAAGGACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAGCAGCGTATTATTTATCTCTGAGTATATTTCCAAGGACATTT  846

seq1  ATTAACTACCAATTTATTCAACAGTGCAGAAGTCAGTGGATCCTGACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTACCAATTTATTCAACAGTGCAGAAGTCAGTGGATCCTGACAGT  896

seq1  AGTATAGCTAAAAAGGAATATATTGGATATGACGCATGCACATGCCATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGCTAAAAAGGAATATATTGGATATGACGCATGCACATGCCATCT  946

seq1  TGAAGATAAAAAGAAAATTATAGATGAATAATATGCATATAAATGTACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAAAAAGAAAATTATAGATGAATAATATGCATATAAATGTACAC  996

seq1  AGGAATGATCTAAGCACAAACATGCTGGATGTGATATGTCCACTTTATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGATCTAAGCACAAACATGCTGGATGTGATATGTCCACTTTATGC  1046

seq1  TGAATTC  1057
      |||||||
seq2  TGAATTC  1053

seq1: chr3_141290254_141291216
seq2: B6Ng01-207F09.g_65_1033

seq1  GAATTCCCAACTGGGAAATGAGAGAGTGCTTAGGGCAGAATTTTTTCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACTGGGAAATGAGAGAGTGCTTAGGGCAGAATTTTTTCAGC  50

seq1  ATTTTTTTTCTACCTTACAAAGAATTTTACAGAAAAAAAACAAAGGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTCTACCTTACAAAGAATTTTACAGAAAAAAAACAAAGGCACC  100

seq1  CTTAACTGGTAGACTCTAGAAACACTTCACTGTGTAATGTATACACTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGGTAGACTCTAGAAACACTTCACTGTGTAATGTATACACTTGT  150

seq1  TAATTGCTGTTATTATTAGAGAAATGAGTGTTCTATGACTATCAAGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTGTTATTATTAGAGAAATGAGTGTTCTATGACTATCAAGGGAG  200

seq1  TGGATGGAAAGGAAGTTGAAAGCTTAACTGTGGAGTCAGATTGGCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAAAGGAAGTTGAAAGCTTAACTGTGGAGTCAGATTGGCTGTGT  250

seq1  TTGTATCCTGCTAACACCATGTTCAAATTGTGTGAGTTTGTCCTGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCTGCTAACACCATGTTCAAATTGTGTGAGTTTGTCCTGTTACT  300

seq1  TCCCACTTCAGCCTTCCATTTCCCAATTCAGGAATGGAGACAGCACGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTCAGCCTTCCATTTCCCAATTCAGGAATGGAGACAGCACGAGG  350

seq1  ATTCTTAGGGAATAAATTACATGAGAATATGAATGTCTATGGCACAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGGGAATAAATTACATGAGAATATGAATGTCTATGGCACAAGTA  400

seq1  TTCTAGATATGAATGTGACTTTGTAGTCTACTAGCATCATAAACATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATATGAATGTGACTTTGTAGTCTACTAGCATCATAAACATCATT  450

seq1  ACATCTTGGACCCATCTCCAACAGTTATAAAAAAAAGGAAGCAGTTGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTGGACCCATCTCCAACAGTTATAAAAAAAAGGAAGCAGTTGCAG  500

seq1  GAAGCATGGTGAAATAAATGCGAAGGCATAAACCGGCAAAAGTTAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGGTGAAATAAATGCGAAGGCATAAACCGGCAAAAGTTAGCAGC  550

seq1  CCAAAGCCCCACGTCTGATTTCTTTGTTGGCTGTTTTCAGTTAGTACACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCCCACGTCTGATTTCTTTGTTGGCTGTTTTCAGTTAGTACACG  600

seq1  TTATCTTTCAAGAAGCAAATTGGATTGTTTGTCAGTTTTACTGGAGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCAAGAAGCAAATTGGATTGTTTGTCAGTTTTACTGGAGGATT  650

seq1  CTGATTTTTCCACCTGTTCCGAGATGACTACTTTGCATCTGTTTTGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTTCCACCTGTTCCGAGATGACTACTTTGCATCTGTTTTGATAC  700

seq1  ACAAATTTATAAACAAATTCTCTAACACCATTCTATGAATAATAGATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTATAAACAAATTCTCTAACACCATTCTATGAATAATAGATCAG  750

seq1  ACTTTTAATCAAGGTATGGTTTCATGTTCCAAAAATTATAGCAAAGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATCAAGGTATGGTTTCATGTTCCAAAAATTATAGCAAAGATAA  800

seq1  ACACCATG-AACTACATTGGCTAGTTTTATGTTGTGTCAGCT-GGGTAAA  848
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  ACACCATGAAACTACATTGGCTAGTTTTATGTTGTGTCAGCTGGGGTAAA  850

seq1  TTACTATCCTTTTTTGCTGTCTGATTATTGGTGTTT-GGAGTTGTTTTTT  897
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTACTATCCTTTTTTGCTGTCTGATTATTGGTGTTTGGGAGTTGTTTTTT  900

seq1  TAATTTATGTCAT-CCTTCAT-GTTCCTGGATTCCTATTT-CTCAGCATC  944
      ||||||||||||| ||||||| || |||||| |||||||| |||||||||
seq2  TAATTTATGTCATCCCTTCATGGTCCCTGGA-TCCTATTTCCTCAGCATC  949

seq1  CTTTT-CTGTATTATTGTTA  963
      ||||| ||||||||||||||
seq2  CTTTTACTGTATTATTGTTA  969