BAC Information

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BAC

Clone NameB6Ng01-207I10
Chromosome1 (Build37)3 (Build37)
Map Location 175,234,827 - 175,235,676141,385,801 - 141,386,307
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneDarc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207I10.bB6Ng01-207I10.g
ACCGA026651GA026652
length9971,008
definitionB6Ng01-207I10.b B6Ng01-207I10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(175,234,827 - 175,235,676)(141,385,801 - 141,386,307)
sequence
gaattcctgaagactctacttctttaaatcaccaactctaacttttagtc
aactctcatatgtgccatatgagagaaattttagacagaagaaatgtaga
ttgcacaacaacaacaagaacacaaaatcataagcagggaattatatttg
gcataagaagcatctctaaatggaacgcagcagggacgagaggcaagtgt
aagagcacagacccctgacaactcaaaggcgtcatagagcaggattgggt
tttccattttcttttgaaatgagattgaatttattgaaaggaagattatc
acagctaaatactcagttacactaactgtgattggttgcccctaacaagt
gtgaaatattaaaatatattaatggaatatatttgtacaaatatataaac
attatgaattaaatgaaaatggcaaataaaatgtattcaaagtcttacct
cgataactgaatctttatataagtcaagctacaattatgtgtatagttat
tgttttagtttggcctcaagtttgcagtatatattggatgaataaagtga
ctgttgtatatgtctagatcctttttatgggtacctatgtttaggtaaaa
ataaaatagatatgtatttcttaaaatgtgtgtttattccaagaaattta
tgttttctttcccttatttcagaaaaatcaataattatgttcttttaatc
aatattttcatacagtatttatcttatggagagaaatgccaaatgacaat
tttgcttgagttactgtagtctttgtataatttttgttgatttcaatttg
cagaaaatttgcttttctcgggcagtagcaattacagctgacaagaaaat
gtttagtgtaatatttaatgttggaaatgaaatatagttttgggtgttat
gtacaaacatttgtcatgaggtcaatgccatcaattatctttatcatggt
gtgttataaaaatatttttagtttccatgatatagattgcagtaaca
gaattccaggatagccagggctacacagagaaaccctgtctcgaaaaaca
aaaacaaacaaacaaacaaacaaaaaaacagtgtgaggaactgaattgat
aaggatggcagacaagagaggaaagagaaaatcatatcacatgaaaggtt
gaatatggaggagggaaactgaggctgccaagggcaagagcctatattaa
tagaaccactgcagcctcaagacctgcagtaaaagtccaatatagctaat
aaggcgatcaattcttcattaaaagacctgcacctctcagcccatggtca
aaaacagtaatgggacttaaattatgtctttgtatgctactaggaagaag
aagaagaaaaaaaaaaaactaaaaagctggggttgaattgtcttagccag
tgctctattactatcaagagacaccatcaccatgacaactcttataaagg
aagcatttaattgggacttgtctatatttcagaaatttattattgccatg
gcagggagcatggcatagtgctggtagacatggtgctgaaaaagtacctg
agagttctatatccatatatgcaacaatggatagagagagcctctgggcc
ttgatagaacctagcggggaaacccccactcaattcccgattcggcgtgc
acccaaaaaaatcatgaaggaccatcttgatgtaattacatgaggtcgtt
taattacggagctccggaccgacatgcatcccacacaggagataatggat
gttggccacgaggctcgaaagctaggggtttttacggggtaaggggctta
ggggtgtggaattgcatagcgacacactactgccttattcaaacatcagc
agaaaaattacatgtacgtgcagggtgtcagagttctgtgagttgttgac
tcagtttagatagccctgtatgtcctcacatttctcttatctttaaggta
agctgttccaggaattgttttactatgggcaataccaggtttgtttttct
ttttctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_175234827_175235676
seq2: B6Ng01-207I10.b_30_879

seq1  GAATTCCTGAAGACTCTACTTCTTTAAATCACCAACTCTAACTTTTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGACTCTACTTCTTTAAATCACCAACTCTAACTTTTAGTC  50

seq1  AACTCTCATATGTGCCATATGAGAGAAATTTTAGACAGAAGAAATGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCATATGTGCCATATGAGAGAAATTTTAGACAGAAGAAATGTAGA  100

seq1  TTGCACAACAACAACAAGAACACAAAATCATAAGCAGGGAATTATATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAACAACAACAAGAACACAAAATCATAAGCAGGGAATTATATTTG  150

seq1  GCATAAGAAGCATCTCTAAATGGAACGCAGCAGGGACGAGAGGCAAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAAGCATCTCTAAATGGAACGCAGCAGGGACGAGAGGCAAGTGT  200

seq1  AAGAGCACAGACCCCTGACAACTCAAAGGCGTCATAGAGCAGGATTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACAGACCCCTGACAACTCAAAGGCGTCATAGAGCAGGATTGGGT  250

seq1  TTTCCATTTTCTTTTGAAATGAGATTGAATTTATTGAAAGGAAGATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTTCTTTTGAAATGAGATTGAATTTATTGAAAGGAAGATTATC  300

seq1  ACAGCTAAATACTCAGTTACACTAACTGTGATTGGTTGCCCCTAACAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAATACTCAGTTACACTAACTGTGATTGGTTGCCCCTAACAAGT  350

seq1  GTGAAATATTAAAATATATTAATGGAATATATTTGTACAAATATATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATATTAAAATATATTAATGGAATATATTTGTACAAATATATAAAC  400

seq1  ATTATGAATTAAATGAAAATGGCAAATAAAATGTATTCAAAGTCTTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAATTAAATGAAAATGGCAAATAAAATGTATTCAAAGTCTTACCT  450

seq1  CGATAACTGAATCTTTATATAAGTCAAGCTACAATTATGTGTATAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAACTGAATCTTTATATAAGTCAAGCTACAATTATGTGTATAGTTAT  500

seq1  TGTTTTAGTTTGGCCTCAAGTTTGCAGTATATATTGGATGAATAAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTTTGGCCTCAAGTTTGCAGTATATATTGGATGAATAAAGTGA  550

seq1  CTGTTGTATATGTCTAGATCCTTTTTATGGGTACCTATGTTTAGGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTATATGTCTAGATCCTTTTTATGGGTACCTATGTTTAGGTAAAA  600

seq1  ATAAAATAGATATGTATTTCTTAAAATGTGTGTTTATTCCAAGAAATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGATATGTATTTCTTAAAATGTGTGTTTATTCCAAGAAATTTA  650

seq1  TGTTTTCTTTCCCTTATTTCAGAAAAATCAATAATTATGTTCTTTTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTTCCCTTATTTCAGAAAAATCAATAATTATGTTCTTTTAATC  700

seq1  AATATTTTCATACAGTATTTATCTTATGGAGAGAAATGCCAAATGACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCATACAGTATTTATCTTATGGAGAGAAATGCCAAATGACAAT  750

seq1  TTTGCTTGAGTTACTGTAGTCTTTGTATAATTTTTGTTGATTTCAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGAGTTACTGTAGTCTTTGTATAATTTTTGTTGATTTCAATTTG  800

seq1  CAGAAAATTTGCTTTTCTCGGGCAGTAGCAATTACAGCTGACAAGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTTGCTTTTCTCGGGCAGTAGCAATTACAGCTGACAAGAAAAT  850

seq1: chr3_141385801_141386307
seq2: B6Ng01-207I10.g_62_428

seq1  TTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAGCAAAA  50
      |||||||| |||||| |||| ||||||||||||||||||||||| | |||
seq2  TTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAC-AAA  49

seq1  AACAAACAAACAAACAAAAACAAAAACA--AACAAAAACAAAAAAGAATT  98
      |||||||||||||||||| | |||||||     |  |||  ||  ||  |
seq2  AACAAACAAACAAACAAACAAAAAAACAGTGTGAGGAACTGAATTGA--T  97

seq1  AAGGTT-----ACAA-AGAAAATAGTCAAAATCTATTAGCTTCCCTCCTT  142
      |||| |     |||| |||  | ||  |||||| ||             |
seq2  AAGGATGGCAGACAAGAGAGGAAAGAGAAAATC-AT------------AT  134

seq1  CCTCTTAAAGTACTGTTTTGAAAAATCCATATTCTTAATCTGTGCCTGTG  192
      |   | ||||       |||||                            
seq2  CACATGAAAG------GTTGAA----------------------------  150

seq1  TTATAGACACTGCTATTACCCAGGAACCATCTGAGGCAGGTCCTGTCATC  242
       ||| ||              ||| |  | ||||||      ||| ||  
seq2  -TATGGA------------GGAGGGA--AACTGAGG------CTGCCAAG  179

seq1  ATTTACACTCTATCAATAATAAAA----TGGAGATGTGGAAACATG-AGA  287
          | |  |||| | ||||| ||    || ||   |  | || || || 
seq2  GGCAAGAGCCTAT-ATTAATAGAACCACTGCAG-CCTCAAGACCTGCAGT  227

seq1  AAAATTGCCTGACCATCTGTTTTGATAGATATGATATGTACGGAACATTT  337
      ||||      | |||         ||| |  | ||| |    || || ||
seq2  AAAA------GTCCA---------ATATAGCTAATAAG--GCGATCAATT  260

seq1  CCTCACTGTA--ATCTCCATCACTCCACACAGCTACATGCACAGGAAGCA  385
      | ||| |  |  | || || | |||  | ||    ||   |||| ||   
seq2  CTTCATTAAAAGACCTGCACCTCTCAGCCCATGGTCAAAAACAGTAA---  307

seq1  ACTTTTGATTTTTCTGTCTAGCCCTTATAGCATTTTTGAGCAGTTGGTTT  435
                        | |  ||||    | || ||            
seq2  ------------------TGGGACTTA----AATTATG------------  323

seq1  GGTTGGTGGTTGGCTCTTTCTTGGCATTTACAATATTTTGAGAGGAAAGG  485
                    ||||| |  ||   ||| |           | ||| 
seq2  --------------TCTTTGTATGC---TACTA-----------GGAAGA  345

seq1  CAAATAAGAAAAAAAAAAAACT  507
        || |||||||||||||||||
seq2  AGAAGAAGAAAAAAAAAAAACT  367