BAC Information

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BAC

Clone NameB6Ng01-207L03
Chromosome3 (Build37)
Map Location 107,433,557 - 107,601,201
singlet/doubletdoublet
Overlap gene6330569M22Rik, Ahcyl1, Csf1
Upstream gene4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3
Downstream geneLOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207L03.bB6Ng01-207L03.g
ACCGA026775GA026776
length1,0951,135
definitionB6Ng01-207L03.b B6Ng01-207L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,433,557 - 107,434,661)(107,600,054 - 107,601,201)
sequence
gaattccctctcggtaagtgcctggctgttcatcacactggaagttgtct
caggtggaggagattgcgtagtaagcgctctgggaatgaatgtgctgatg
aggaagccctgaaatgctgcgacgagacgggtgtgtgttcattcatgaat
tctgcaaacggaagcagtgggaggaattttaacttggggcgaggtgaata
gctccagacagcgcgggcaaagggaatcgcagctcactagcaaggaggag
aatccggcgccctttgtgtacttctgatcccttcacagctcagcaactgg
gctcactgggcatgcaaaaatacttggcaatgtctggccgcggtttgatc
cagcgctgactaaaattcggagggaagccacaatgtgctctctctgctac
tcacacaacctggggccggccaagcagcactagagagagaagccctgttc
taagcgcccgctaaactctcctgggtcccttcgctgccaactggcgtggc
ccaccaccctgctaagatcagaggccggaaaggatgaggggctaaccagc
cagcagaccaccgattttgcaccccaggagggctgtgcctcaggccacgc
ccccgggggcgaccggccatccccggctcggggaccttcttcccccggcc
gcagcagagttggtgacagggctccgggctttcctccccggggctgtggc
ggctgccagcctagctaactgcacggttcccggtaaagtgacagctccca
gggtccctgtcaagccgtcgggaagcccggctgggcccggatgccgcccc
ggtctcccgggaccccctctgtcacccgcccggtgccagcctcgcccccc
tgcagctctgacctccgagtctttgcgctggttgcggttgaactcgcggg
ctttgccccccggcaggaggcctccggcggctctcggcgccccaggagag
ctgcgcggttgcaggcgcggagagtgcggctgcgctgcttgttgttcaca
ttcagaggcggacgccggctgccgggctcaatctgctgctccacactccc
cggctcaatcccggacgggcctccggtcaggcaactcctcgcgtg
gaattctgaacttggacttgttaccaaatgaccctctgtgctcatgctcc
aagcacacttccatatacaccagcctcactgttttcttcccttctctgat
ttcatttatgtagtcagtactttccccccaacagaaacatatccagtaag
tgtttagataaggaaacaaaggctcaaagagacgaagaaaactgcagaga
gatagacacatacaaggctgcacatctgcagtcctagtactcaggaggct
gagatgggcagggagatctcaagttcaaggccaggcagagctacttagtg
aatttcaagacagcctggcctaagtagtgagattctgtcagaacacacat
gcacacacacatacatgctcacacacacacacacacacacacacacacac
acacacacacacaccaattgtgtctatttagtcagaagtcacaaagtcaa
actttgagcactggggagttgtagctctggaacccgagctctaaccatta
ctccaagacatgacacttccctactgaaagagaaaagaatcacactgcca
catttcacttcaaaagaaacaagtatctccatggaaaagaaacaggaaaa
tgtgaaacttgccaagaaaagcatttcgagcgctcagtccagatgaaagg
aaggttgtagagccactggcaatggctcttaaccaaccgggagcggagga
atcaaggagaccatgtatgtgaacagctgccgtggaagtgaggcccacag
ggtctgaacagatgggaaggcctgagatggagcatggaggaacagaataa
ttcatgccctggaaaaagaactgaggaatttccccagaatacagcacaag
aggttaaaaataattatgaaactctaatcacatgatttacatacaggctc
tatacctcctaaattctgtggcaggagcctttatattaatattggctaaa
agaaagccacacttgacagatccacaggaacatttcccagctgccctcag
cacagctgatgacagggtcagagccttcctgagatttctgaatctggacg
gagtaaggttcagtagcttgttgctggcttggtttatgttcaacgtggaa
caagcttgagtcactgaacgtgactcaattagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107433557_107434661
seq2: B6Ng01-207L03.b_45_1139

seq1  GAATTCCCTCTCGGTAAGTGCCTGGCTGTTCATCACACTGGAAGTTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTCGGTAAGTGCCTGGCTGTTCATCACACTGGAAGTTGTCT  50

seq1  CAGGTGGAGGAGATTGCGTAGTAAGCGCTCTGGGAATGAATGTGCTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGAGGAGATTGCGTAGTAAGCGCTCTGGGAATGAATGTGCTGATG  100

seq1  AGGAAGCCCTGAAATGCTGCGACGAGACGGGTGTGTGTTCATTCATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCCTGAAATGCTGCGACGAGACGGGTGTGTGTTCATTCATGAAT  150

seq1  TCTGCAAACGGAAGCAGTGGGAGGAATTTTAACTTGGGGCGAGGTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAACGGAAGCAGTGGGAGGAATTTTAACTTGGGGCGAGGTGAATA  200

seq1  GCTCCAGACAGCGCGGGCAAAGGGAATCGCAGCTCACTAGCAAGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGACAGCGCGGGCAAAGGGAATCGCAGCTCACTAGCAAGGAGGAG  250

seq1  AATCCGGCGCCCTTTGTGTACTTCTGATCCCTTCACAGCTCAGCAACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGGCGCCCTTTGTGTACTTCTGATCCCTTCACAGCTCAGCAACTGG  300

seq1  GCTCACTGGGCATGCAAAAATACTTGGCAATGTCTGGCCGCGGTTTGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGGGCATGCAAAAATACTTGGCAATGTCTGGCCGCGGTTTGATC  350

seq1  CAGCGCTGACTAAAATTCGGAGGGAAGCCACAATGTGCTCTCTCTGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCTGACTAAAATTCGGAGGGAAGCCACAATGTGCTCTCTCTGCTAC  400

seq1  TCACACAACCTGGGGCCGGCCAAGCAGCACTAGAGAGAGAAGCCCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAACCTGGGGCCGGCCAAGCAGCACTAGAGAGAGAAGCCCTGTTC  450

seq1  TAAGCGCCCGCTAAACTCTCCTGGGTCCCTTCGCTGCCAACTGGCGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGCCCGCTAAACTCTCCTGGGTCCCTTCGCTGCCAACTGGCGTGGC  500

seq1  CCACCACCCTGCTAAGATCAGAGGCCGGAAAGGATGAGGGGCTAACCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCTGCTAAGATCAGAGGCCGGAAAGGATGAGGGGCTAACCAGC  550

seq1  CAGCAGACCACCGATTTTGCACCCCAGGAGGGCTGTGCCTCAGGCCACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGACCACCGATTTTGCACCCCAGGAGGGCTGTGCCTCAGGCCACGC  600

seq1  CCCCGGGGGCGACCGGCCATCCCCGGCTCGGGGACCTTCTTCCCCCGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGGGCGACCGGCCATCCCCGGCTCGGGGACCTTCTTCCCCCGGCC  650

seq1  GCAGCAGAGTTGGTGACAGGGCTCCGGGCTTTCCTCCCCGGGGCTGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGTTGGTGACAGGGCTCCGGGCTTTCCTCCCCGGGGCTGTGGC  700

seq1  GGCTGCCAGCCTAGCTAACTGCACGGTTCCCGGTAAAGTGACAGCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCAGCCTAGCTAACTGCACGGTTCCCGGTAAAGTGACAGCTCCCA  750

seq1  GGGTCCCTGTCAAGCCGTCGGGAAGCCCGGCTGGGCCCGGATGCCGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCTGTCAAGCCGTCGGGAAGCCCGGCTGGGCCCGGATGCCGCCCC  800

seq1  GGTCTCCCGGGACCCCCTCTGTCACCCGCCCGGTGCCAGCCTCGCCCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCGGGACCCCCTCTGTCACCCGCCCGGTGCCAGCCTCGCCCCCC  850

seq1  TGCAGCTCTGACCTCCGAGTCTTTGCGCTGGTTGCGGTTGAACTCGCGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTGACCTCCGAGTCTTTGCGCTGGTTGCGGTTGAACTCGCGGG  900

seq1  CTTTGCCCCCCGGCAGGAGGCCTCCGGCGGCCCTCGGCGCCCCAGGAGGA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||  
seq2  CTTTGCCCCCCGGCAGGAGGCCTCCGGCGGCTCTCGGCGCCCCAGGAG--  948

seq1  GGCTGCGCGGTGGCAGGCGGCGGAGGAGGTGGCGGCTGCGGCTGCTTGTT  1000
       |||||||||| |||||| ||||| |||   |||||||| ||||||||||
seq2  AGCTGCGCGGTTGCAGGC-GCGGA-GAG--TGCGGCTGC-GCTGCTTGTT  993

seq1  GTTCACAATCAGAGGGCCGGGACCGGCGGCTGCC-GGCTCCATCTTGGCT  1049
      ||||||| |||||||  |||   || |||||||| ||||| ||||  |||
seq2  GTTCACATTCAGAGG--CGG--ACGCCGGCTGCCGGGCTCAATCT--GCT  1037

seq1  GCTCCACAC-CCCCGGCTCAATTCGCGGAC-GGCCTCCCGTCAGGCAACT  1097
      ||||||||| ||||||||||| || ||||| ||||||| |||||||||||
seq2  GCTCCACACTCCCCGGCTCAA-TCCCGGACGGGCCTCCGGTCAGGCAACT  1086

seq1  -CTCGCGTG  1105
       ||||||||
seq2  CCTCGCGTG  1095

seq1: chr3_107600054_107601201
seq2: B6Ng01-207L03.g_65_1199 (reverse)

seq1  TCTCTTAATTGAGGTTCCCCGTCTAAAGTGACTCAAGCTTTTGTCAAGTT  50
      |||| ||||||||  || |  ||   |||||||||||||| |  || |||
seq2  TCTC-TAATTGAG--TCACGTTC---AGTGACTCAAGCTTGTTCCACGTT  44

seq1  G-ACATAAAACAAGCCAGCA--CAGCTACTGAAACCTAATTCTGTCAAGA  97
      | ||||||| ||||||||||   |||||||| ||||| | || ||| |||
seq2  GAACATAAACCAAGCCAGCAACAAGCTACTG-AACCTTACTCCGTCCAGA  93

seq1  -TCAGAAATCTCAGGGAAGGGCTCTGACCCCTGTCAATCAGCTGTTGCCT  146
       ||||||||||||||  | |||||||| ||||||| |||||||||   ||
seq2  TTCAGAAATCTCAGG--AAGGCTCTGA-CCCTGTC-ATCAGCTGT--GCT  137

seq1  GAGGGCAAGCTGGGGAAATTGTTCCCTGTGGATCTGTCAGGTGTGGCTTT  196
      |||||| |||||||  || |||| ||||||||||||||| ||||||||||
seq2  GAGGGC-AGCTGGG--AAATGTT-CCTGTGGATCTGTCAAGTGTGGCTTT  183

seq1  CTTTTAGCCAATATTAATATAAAGGCTCCTGCCACAGAATTTAGGA-GTA  245
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTTAGCCAATATTAATATAAAGGCTCCTGCCACAGAATTTAGGAGGTA  233

seq1  TAGAGCCTGTATGTAAATCATGTGATTAGAGTTTCATAATTATTTTTAAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTGTATGTAAATCATGTGATTAGAGTTTCATAATTATTTTTAAC  283

seq1  CTCTTGTGCTGTATTCTGGGGAAATTCCTCAGTTTCTTTTTCCAGGGCAT  345
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCTTGTGCTGTATTCTGGGGAAATTCCTCAG-TTCTTTTTCCAGGGCAT  332

seq1  GAATTATTCTGTTCCTCCATGCTCCATCTCAGGCCTTCCCATCTGTTCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTCTGTTCCTCCATGCTCCATCTCAGGCCTTCCCATCTGTTCAG  382

seq1  ACCCTGTGGGCCTCACTTCCACGGCAGCTGTTCACATACATGGTCTCCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGGGCCTCACTTCCACGGCAGCTGTTCACATACATGGTCTCCTT  432

seq1  GATTCCTCCGCTCCCGGTTGGTTAAGAGCCATTGCCAGTGGCTCTACAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCGCTCCCGGTTGGTTAAGAGCCATTGCCAGTGGCTCTACAAC  482

seq1  CTTCCTTTCATCTGGACTGAGCGCTCGAAATGCTTTTCTTGGCAAGTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCATCTGGACTGAGCGCTCGAAATGCTTTTCTTGGCAAGTTTC  532

seq1  ACATTTTCCTGTTTCTTTTCCATGGAGATACTTGTTTCTTTTGAAGTGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCTGTTTCTTTTCCATGGAGATACTTGTTTCTTTTGAAGTGAA  582

seq1  ATGTGGCAGTGTGATTCTTTTCTCTTTCAGTAGGGAAGTGTCATGTCTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAGTGTGATTCTTTTCTCTTTCAGTAGGGAAGTGTCATGTCTTG  632

seq1  GAGTAATGGTTAGAGCTCGGGTTCCAGAGCTACAACTCCCCAGTGCTCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGGTTAGAGCTCGGGTTCCAGAGCTACAACTCCCCAGTGCTCAA  682

seq1  AGTTTGACTTTGTGACTTCTGACTAAATAGACACAATTGGTGTGTGTGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGACTTTGTGACTTCTGACTAAATAGACACAATTGGTGTGTGTGTG  732

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCATGTATGTGTGTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCATGTATGTGTGTG  782

seq1  TGCATGTGTGTTCTGACAGAATCTCACTACTTAGGCCAGGCTGTCTTGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTTCTGACAGAATCTCACTACTTAGGCCAGGCTGTCTTGAA  832

seq1  ATTCACTAAGTAGCTCTGCCTGGCCTTGAACTTGAGATCTCCCTGCCCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAAGTAGCTCTGCCTGGCCTTGAACTTGAGATCTCCCTGCCCAT  882

seq1  CTCAGCCTCCTGAGTACTAGGACTGCAGATGTGCAGCCTTGTATGTGTCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCCTGAGTACTAGGACTGCAGATGTGCAGCCTTGTATGTGTCT  932

seq1  ATCTCTCTGCAGTTTTCTTCGTCTCTTTGAGCCTTTGTTTCCTTATCTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTGCAGTTTTCTTCGTCTCTTTGAGCCTTTGTTTCCTTATCTAA  982

seq1  ACACTTACTGGATATGTTTCTGTTGGGGGGAAAGTACTGACTACATAAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACTGGATATGTTTCTGTTGGGGGGAAAGTACTGACTACATAAAT  1032

seq1  GAAATCAGAGAAGGGAAGAAAACAGTGAGGCTGGTGTATATGGAAGTGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGAGAAGGGAAGAAAACAGTGAGGCTGGTGTATATGGAAGTGTG  1082

seq1  CTTGGAGCATGAGCACAGAGGGTCATTTGGTAACAAGTCCAAGTTCAGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCATGAGCACAGAGGGTCATTTGGTAACAAGTCCAAGTTCAGAA  1132

seq1  TTC  1148
      |||
seq2  TTC  1135