BAC Information

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BAC

Clone NameB6Ng01-208E21
Chromosome3 (Build37)4 (Build37)
Map Location 12,857,688 - 12,858,576146,959,606 - 146,960,791
singlet/doubletsingletsinglet
Overlap geneEG668033
Upstream geneEG621965, LOC100039798
Downstream geneLOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208E21.bB6Ng01-208E21.g
ACCGA027222GA027223
length1,2141,168
definitionB6Ng01-208E21.b B6Ng01-208E21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,857,688 - 12,858,576)(146,959,606 - 146,960,791)
sequence
gaattcatacaagagagaaaccttacaaatgtagtgaatgtggcaaatgc
tttactgaaaaaagcagtctgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaacaatcca
aacttagtattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtgaaaaatgctttaatgaaaaaaacagtctgaaaattcatca
gagaattcatacaggagagagaccttacaaatgtagtgaatgtgacaaat
gctttacccaaaaatcctatcttaatattcatcagagaattcatgcagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttactacaaaagg
caatctgataattcatcagagaattcatacaagagagaaaccttacaaat
gtagtgaatgtgacaaatgctttacccagaaatcccaacttagtattcat
cagaaaattcatacaggagagaaaccttacaaatagattgtatgtgacaa
atacaatactcacaatgtcagtcttagaaatcatcagttatttcatacag
tagagaatctttataaatgaagtaaatgaggcaatcctttaccaagatat
atcatctcaaaattcattagagaatacttagagaagacaaacttttcaaa
tatattgtaggtatgaatcctttccttttggcctagttcctagactgtaa
cagtgaatacttacagggtagaaacttaactcatgcattgtatgaagaaa
tagctttgacttcatttcaggtcagagagaacatctaagaactttttagg
gtaaagtatttctgttggggaaaatgttgtattcttgacaacacttgagg
ctccacactagagaattagtatgattatgaaaatcttgtgaaaatattca
tgcaatgttcaaatcttagataatgtcaactatttatgttgggagaaact
ctgaaatgtgaaaatgtagaaagcatttcatgacaccttttacttgttca
ccctcaaacgtttatagatgagatagttaggagtcagaagatagtatttg
tgtaacactttcattgagaacagaaaataatcaattttcaaaagaactat
ttaaggtcttaatacaacttcgaaaatagtaatagaacctggtagaccat
ttggcaatattttt

gaattcaatgtctgtttagcattaaaagagttagaaacactgttttacat
atggtgatttgtgttaaatgaaataggtaaaattcagttcaatgttccag
gcaagtattactaggttaagataaaaaggctcaaaaaaggaaatatgtag
atgctttcagagcctcagaaataactcttgaattcaaggaagtatgagag
aaaaatatagaaaaatacatgaaagcatggcttcatagatttcacggata
gctatccagactttgctttgtctgtgcatggttctgaagtcattaatacc
cacttattgaacaaaagtcctataagtctcagaaaaatgctgcccattga
cacatattacaaaacattgtggtgactggtcctgtcgtgccttaatactc
caatctaccataaggaatgatttagatttccattcttttcttaaatcatc
tacagaatgttaatattttgcacatctcagaatatacattctgaacaaaa
cctcaacaactcactattaaggtattatcttcatcttaatttcatgtatg
agttcattcatacaaatatcatgaatctgtaaatcttagagaaaaatcct
ttttagagtagatgaggtgcatactcatgcacagtttagaaatccaacca
tcctggaaatacatttggaagttctggaaaacgtactattactccaagtt
caagtattatattagaatatttatcctaagttcaggaagtttcagtaaat
taggatctaagaaaaaagtcaaatggtacaatgaacaaatccatgtattt
tccttgagtttaaaaaatacaaggaaattgttcaacttgtgtgaacctac
tgaatgataacatttcattggtctcaatattggaatttgatgaacaggac
ctcattagtagattctaagtacgagaagaaggcaatagtggcctttgatt
tcagatggtcattagtatttttctgccaactgcttcatcagagatgttga
aacacataccaggcaaatgaataggtggcttagtagctctactgtctaga
atgcaacagtgacagtctctctgatctcatgcacatggtcagtgaattaa
gcttcactgctatgactgagatcatactaatctgaggtgacctccaggtt
ctattggaaaaaatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12857688_12858576
seq2: B6Ng01-208E21.b_371_1258

seq1  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGTAGTGAATG  50
      |||||||||||||||||| ||||||||| |||||||||||| ||||||||
seq2  ATTCATCAGAGAATTCATGCAGGAGAGAAACCTTACAAATGCAGTGAATG  50

seq1  TGACAAATGCTTTTCCCGAAAATTCCATCTTGGTATTTATCAGAGAATTC  100
      ||||||||||||| |   ||||  | ||||    ||| ||||||||||||
seq2  TGACAAATGCTTTACTACAAAAGGCAATCTGATAATTCATCAGAGAATTC  100

seq1  ATACAGGAAAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACC  150
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACC  150

seq1  CAGAAATCCCATCTTAGTATTCATCAGAAAATTCATACAGGAGAGAAACC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCCAACTTAGTATTCATCAGAAAATTCATACAGGAGAGAAACC  200

seq1  TTACAAATAGAATGTATGTGACAAATACAATACTCACAATGTCAGTCTTA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATAGATTGTATGTGACAAATACAATACTCACAATGTCAGTCTTA  250

seq1  GAAATCATCAGTTATTTCATACAGTAGAGAATCTTTATAAATGAAGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAATCATCAGTTATTTCATACAGTAGAGAATCTTTATAAATGAAGTAAA  300

seq1  CGAGACAATTCTTTACCAAGATATATCATCTCAAAATTCATTAGAGAATA  350
       ||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAATCCTTTACCAAGATATATCATCTCAAAATTCATTAGAGAATA  350

seq1  CTTAGAGAAGACAAACTTTTCAAATATATTGTAGGTATGAATCCTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAAGACAAACTTTTCAAATATATTGTAGGTATGAATCCTTTCCT  400

seq1  TTTGGCCTATTTCCTAGACTGTAACAGTGAATACTTACAGGCTAGAAACT  450
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  TTTGGCCTAGTTCCTAGACTGTAACAGTGAATACTTACAGGGTAGAAACT  450

seq1  TAACTCATGCATTATATGAAGAAATATCTTTGACTTCATTTCAGGTCAGA  500
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TAACTCATGCATTGTATGAAGAAATAGCTTTGACTTCATTTCAGGTCAGA  500

seq1  GAGAACATCTAAGAACTTTTTAGGGTAAAGTATTTCTGTTGGGGAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATCTAAGAACTTTTTAGGGTAAAGTATTTCTGTTGGGGAAAATG  550

seq1  TTGTATTCTTGACAACACTTGAGGCTCCACACTAGAGAATTAGTATGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCTTGACAACACTTGAGGCTCCACACTAGAGAATTAGTATGATT  600

seq1  ATGAAAATCTTGTGAAAATATTCATGCAATGTTCAAATCTTAGATAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATCTTGTGAAAATATTCATGCAATGTTCAAATCTTAGATAATGT  650

seq1  CAACTATTTATGTTGGGAGAAACTCTGAAAATGTGAAAATGTAGAAAGCT  700
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  CAACTATTTATGTTGGGAGAAACTCTG-AAATGTGAAAATGTAGAAAGCA  699

seq1  TTTCATGACACCTTTTTACTTGTTCACCCTCAAACGTTATAAGATGAAGA  750
      |||||||||||| |||||||||||||||||||||||||   ||||| |||
seq2  TTTCATGACACC-TTTTACTTGTTCACCCTCAAACGTTTATAGATG-AGA  747

seq1  TAAGTTAGGAAGTCAGAAGATAGTA-TTGTATAACACTTTCATTGAG-AC  798
      | ||||||| ||||||||||||||| |||| |||||||||||||||| ||
seq2  T-AGTTAGG-AGTCAGAAGATAGTATTTGTGTAACACTTTCATTGAGAAC  795

seq1  AG-AAATAATCCA-TTTCAAAAGGAAACTATTTAAGGTCTTTAATACAAC  846
      || |||||||| | |||||||||  |||||||||||||| ||||||||||
seq2  AGAAAATAATCAATTTTCAAAAG--AACTATTTAAGGTC-TTAATACAAC  842

seq1  CCTCAAAATAGGTAATA-AAACTGGTAG--CATTTTG-TATATTTTT  889
          |||||| |||||| || |||||||  ||||| |  ||||||||
seq2  TTCGAAAATA-GTAATAGAACCTGGTAGACCATTTGGCAATATTTTT  888


seq1: chr4_146959606_146960791
seq2: B6Ng01-208E21.g_64_1231

seq1  GAATTCAATGTCTGTTTAGCATTAAAAGAGTTAGAAACACTGTTTTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTCTGTTTAGCATTAAAAGAGTTAGAAACACTGTTTTACAT  50

seq1  ATGGTGATTTGTGTTAAATGAAATAGGTAAAATTCAGTTCAATGTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATTTGTGTTAAATGAAATAGGTAAAATTCAGTTCAATGTTCCAG  100

seq1  GCAAGTATTACTAGGTTAAGATAAAAAGGCTCAAAAAAGGAAATATGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATTACTAGGTTAAGATAAAAAGGCTCAAAAAAGGAAATATGTAG  150

seq1  ATGCTTTCAGAGCCTCAGAAATAACTCTTGAATTCAAGGAAGTATGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCAGAGCCTCAGAAATAACTCTTGAATTCAAGGAAGTATGAGAG  200

seq1  AAAAATATAGAAAAATACATGAAAGCATGGCTTCATAGATTTCACGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAGAAAAATACATGAAAGCATGGCTTCATAGATTTCACGGATA  250

seq1  GCTATCCAGACTTTGCTTTGTCTGTGCATGGTTCTGAAGTCATTAATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCAGACTTTGCTTTGTCTGTGCATGGTTCTGAAGTCATTAATACC  300

seq1  CACTTATTGAACAAAAGTCCTATAAGTCTCAGAAAAATGCTGCCCATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTGAACAAAAGTCCTATAAGTCTCAGAAAAATGCTGCCCATTGA  350

seq1  CACATATTACAAAACATTGTGGTGACTGGTCCTGTCGTGCCTTAATACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTACAAAACATTGTGGTGACTGGTCCTGTCGTGCCTTAATACTC  400

seq1  CAATCTACCATAAGGAATGATTTAGATTTCCATTCTTTTCTTAAATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTACCATAAGGAATGATTTAGATTTCCATTCTTTTCTTAAATCATC  450

seq1  TACAGAATGTTAATATTTTGCACATCTCAGAATATACATTCTGAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATGTTAATATTTTGCACATCTCAGAATATACATTCTGAACAAAA  500

seq1  CCTCAACAACTCACTATTAAGGTATTATCTTCATCTTAATTTCATGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACAACTCACTATTAAGGTATTATCTTCATCTTAATTTCATGTATG  550

seq1  AGTTCATTCATACAAATATCATGAATCTGTAAATCTTAGAGAAAAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTCATACAAATATCATGAATCTGTAAATCTTAGAGAAAAATCCT  600

seq1  TTTTAGAGTAGATGAGGTGCATACTCATGCACAGTTTAGAAATCCAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGTAGATGAGGTGCATACTCATGCACAGTTTAGAAATCCAACCA  650

seq1  TCCTGGAAATACATTTGGAAGTTCTGGAAAACGTACTATTACTCCAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAAATACATTTGGAAGTTCTGGAAAACGTACTATTACTCCAAGTT  700

seq1  CAAGTATTATATTAGAATATTTATCCTAAGTTCAGGAAGTTTCAGTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTATATTAGAATATTTATCCTAAGTTCAGGAAGTTTCAGTAAAT  750

seq1  TAGGATCTAAGAAAAAAGTCAAATGGTACAATGAACAAATCCATGTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTAAGAAAAAAGTCAAATGGTACAATGAACAAATCCATGTATTT  800

seq1  TCCTTGAGTTTAAAAAATACAAGGAAATTGTTCAACTTGTGTGAACCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGTTTAAAAAATACAAGGAAATTGTTCAACTTGTGTGAACCTAC  850

seq1  TGAATGATAACATTTCATTGGTCTCAATATTGGAATTTGATGAAACAGGA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAATGATAACATTTCATTGGTCTCAATATTGGAATTTGATG-AACAGGA  899

seq1  CCTCATTAGTAGATTCTAAGTACGAGAAGAA-GCAATAGTGGCCTTTGAT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCATTAGTAGATTCTAAGTACGAGAAGAAGGCAATAGTGGCCTTTGAT  949

seq1  TTCAGATGGTCATTAGTA-TTTTCTGCCAACTGCTTCATCAGAGATGTTG  998
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCAGATGGTCATTAGTATTTTTCTGCCAACTGCTTCATCAGAGATGTTG  999

seq1  AAACACATACCAGGCAAATGAAAATTAGGTGGCTTAAGTAGCTCTTACCT  1048
      ||||||||||||||||||||||   |||||||||| |||||||||   ||
seq2  AAACACATACCAGGCAAATGAA---TAGGTGGCTT-AGTAGCTCT--ACT  1043

seq1  GTCTAGAAATTGCAACCAGGTGAACAGTCTCTCTTGATTCTCATTGCACA  1098
      ||||||||  ||||||   ||| |||||||||| ||| ||||| ||||||
seq2  GTCTAGAA--TGCAAC--AGTG-ACAGTCTCTC-TGA-TCTCA-TGCACA  1085

seq1  TGTTCAGTGGATTTAGGCCTCACTGCTTAATGACTGAGAGATCATTACCC  1148
      || ||||| || ||| || ||||||||  ||||||  ||||||||    |
seq2  TGGTCAGT-GAATTAAGCTTCACTGCT--ATGACT--GAGATCAT---AC  1127

seq1  AAATCTGAAGTGACTTCCAGGTTC-AT--GGAAAAATTTCT  1186
       ||||||| ||||| ||||||||| ||  | ||||||||||
seq2  TAATCTGAGGTGACCTCCAGGTTCTATTGGAAAAAATTTCT  1168


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