BAC Information

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BAC

Clone NameB6Ng01-208H03
Chromosome3 (Build37)
Map Location 77,798,278 - 77,890,645
singlet/doubletdoublet
Overlap geneEG626461, LOC667526
Upstream geneDnmt3a-ps1
Downstream geneLOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H03.bB6Ng01-208H03.g
ACCGA027326GA027327
length1,1491,048
definitionB6Ng01-208H03.b B6Ng01-208H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,798,278 - 77,799,445)(77,889,594 - 77,890,645)
sequence
gaattcaattcaaaaagttctcaagataagcattgtgttgtaaacatatt
atttcttcaaggatattctataacctggggatagtaaaactattttattt
tctatttgtttagaaagggccagaaggctctttatgtgctaccaggttta
ttaataaaagtgaaaaagcaataaactcacctgtatggtgatcagtgaag
ctagagataatggacgaccccattatataccaacacattttatggacggc
atggttttctctgatagttttaataataactgcatctgataaatttccag
gttgttttacttgtaatttttttctttggacattattttgagctatgtag
gaatatctatttttttgtactatgaacattatcaaacacataaaatccct
tataaattaacaaaactcttgtacatcatggctatacacaataatgctaa
tctaaagatatcaatttgctgactatgctaatgtacatatattttcatcc
acattacagtcgccattacaatccttctaccaaagtaagttattcatttt
aatgtaaagtctacgaaaaagatgaattagctgttttcagcacttatatt
gtggcagtgctacaaaagggaagcagttggagaaaaagagattttgaata
tcatttaaatgatacattctacagttagacttacaacagatgattcacca
tcaagaaaatttttgtttaaacaacctgtcactaagacccagtatatttc
cccctacataaatagagctctattgtgctttaaaaacaaaactctgtcag
tggttgccatttaataagaaaataataactattttcattttaaaattaaa
gattaatgtaagattctacactttgtctacttttaaggtaaagatcctca
actaagaatcaaacaatgtggtctgatataattttttaaaacacaataaa
aacatgataaatgtaaggaatattgtccagaatacctaaattgttcaaat
cctgttaacttagtgattttctgcacaagaagcaaggaaatatatggcta
atttgacaggctactaagatagtcattagtaaatatgaggttaagttagt
ttgagaatttacttttttataaatgtaaaccattcgatagaagaatgac

gaattcctacatgcctatgttttgttgagtgcaaagaaaatttctagtat
tcagttcgttgtacctgcagtcaaagctcctgggtttgggaacaatagga
agaaccggcttaaagatatagctattgttactggtggtgctgtgtttgga
taagagggcttgaatctaaatcttcaagattttcaagctcatgacttagg
aatagttggagaggtcattgtcacctaagatgatgccatacttttgaaag
gaaaagttgacaaagctcacattgaaaaatgtattcaagaaatccctgag
cagctagacatcacaacttgcgaataggaaaaggaaaagctaaacaagca
agttgctaaactttcagatggagtaactgtgttgaaggttggagggacaa
gtgatgttgaagtgaatgagaagaaagacagagttacagatattctcagt
gctacaggagcagctgttgaagaaggcattgttctaggagggggctgtgc
tctgcttcggtgtgtcccagccttggattcattcaagccttctaatgaag
atcagaaaataggtatagaaattattaaaagagcacttaaaattcctcca
atggcaattgctaagaatgcagatgacaaaggatctgtgatagttgagca
aattctacagagttcctcagaagttggttatgacatcaagctgggagatt
ttttcacatggtgcaaaagggaatcattgatacaacaaaaatttaagaac
tgccttaatggatgctgctggggtggcctccttgctcactatatctgaag
ctgtagtgacagaaattcctaaagaagagaaaggaccttggaatggatgc
aatggtggaactggagagggtatgtgaggtgacatgttctaactcctaga
atacttctttgccctaatcaatgagctgttacaggaagctcaaggcagtt
tcctcaccaaaactttaagagaagtcacctgaagacactactgaagagat
gctgctgaccactgtaactatcagcttctgtttcatgacataatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77798278_77799445
seq2: B6Ng01-208H03.b_46_1194

seq1  GAATTCAATTCAAAAAGTTCTCAAGATAAGCATTGTGTTGTAAACATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCAAAAAGTTCTCAAGATAAGCATTGTGTTGTAAACATATT  50

seq1  ATTTCTTCAAGGATATTCTATAACCTGGGGATAGTAAAACTATTTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCAAGGATATTCTATAACCTGGGGATAGTAAAACTATTTTATTT  100

seq1  TCTATTTGTTTAGAAAGGGCCAGAAGGCTCTTTATGTGCTACCAGGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGTTTAGAAAGGGCCAGAAGGCTCTTTATGTGCTACCAGGTTTA  150

seq1  TTAATAAAAGTGAAAAAGCAATAAACTCACCTGTATGGTGATCAGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAGTGAAAAAGCAATAAACTCACCTGTATGGTGATCAGTGAAG  200

seq1  CTAGAGATAATGGACGACCCCATTATATACCAACACATTTTATGGACGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATAATGGACGACCCCATTATATACCAACACATTTTATGGACGGC  250

seq1  ATGGTTTTCTCTGATAGTTTTAATAATAACTGCATCTGATAAATTTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTCTCTGATAGTTTTAATAATAACTGCATCTGATAAATTTCCAG  300

seq1  GTTGTTTTACTTGTAATTTTTTTCTTTGGACATTATTTTGAGCTATGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTACTTGTAATTTTTTTCTTTGGACATTATTTTGAGCTATGTAG  350

seq1  GAATATCTATTTTTTTGTACTATGAACATTATCAAACACATAAAATCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTATTTTTTTGTACTATGAACATTATCAAACACATAAAATCCCT  400

seq1  TATAAATTAACAAAACTCTTGTACATCATGGCTATACACAATAATGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTAACAAAACTCTTGTACATCATGGCTATACACAATAATGCTAA  450

seq1  TCTAAAGATATCAATTTGCTGACTATGCTAATGTACATATATTTTCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGATATCAATTTGCTGACTATGCTAATGTACATATATTTTCATCC  500

seq1  ACATTACAGTCGCCATTACAATCCTTCTACCAAAGTAAGTTATTCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAGTCGCCATTACAATCCTTCTACCAAAGTAAGTTATTCATTTT  550

seq1  AATGTAAAGTCTACGAAAAAGATGAATTAGCTGTTTTCAGCACTTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGTCTACGAAAAAGATGAATTAGCTGTTTTCAGCACTTATATT  600

seq1  GTGGCAGTGCTACAAAAGGGAAGCAGTTGGAGAAAAAGAGATTTTGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGTGCTACAAAAGGGAAGCAGTTGGAGAAAAAGAGATTTTGAATA  650

seq1  TCATTTAAATGATACATTCTACAGTTAGACTTACAACAGATGATTCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAATGATACATTCTACAGTTAGACTTACAACAGATGATTCACCA  700

seq1  TCAAGAAAATTTTTGTTTAAACAACCTGTCACTAAGACCCAGTATATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAATTTTTGTTTAAACAACCTGTCACTAAGACCCAGTATATTTC  750

seq1  CCCCTACATAAATAGAGCTCTATTGTGCTTTAAAAACAAAACTCTGTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACATAAATAGAGCTCTATTGTGCTTTAAAAACAAAACTCTGTCAG  800

seq1  TGGTTGCCATTTAATAAGAAAATAATAACTATTTTCATTTTAAAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCATTTAATAAGAAAATAATAACTATTTTCATTTTAAAATTAAA  850

seq1  GATTAATGTAAGATTCTACACTTTGTCTACTTTTAAGGTAAAGATCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGTAAGATTCTACACTTTGTCTACTTTTAAGGTAAAGATCCTCA  900

seq1  ACTAAGAATCAAACAATGTGGTCTGATATAATTTTTTAAAACACAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAATCAAACAATGTGGTCTGATATAATTTTTTAAAACACAATAAA  950

seq1  AACATGATAAATGTAAGGGAATATTGTCCAGAATACCTAAATTGTTCAAA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACATGATAAATGTAA-GGAATATTGTCCAGAATACCTAAATTGTTCAAA  999

seq1  TCCTTGTTAACTTAGTGATTTTCTGCACAAAGAGCAAAGGAAATATTATG  1050
      ||| ||||||||||||||||||||||||||  ||| ||||||||| ||||
seq2  TCC-TGTTAACTTAGTGATTTTCTGCACAAGAAGC-AAGGAAATA-TATG  1046

seq1  GCTAAATTTGACAGGCTACTAAGATAAGTTCATTAAGTAAAATTAATGAG  1100
      ||| ||||||||||||||||||||||   ||||| ||||||    |||||
seq2  GCT-AATTTGACAGGCTACTAAGATA--GTCATT-AGTAAA---TATGAG  1089

seq1  GTAAAGTTAAGTTTTGAGATATTTACTTTTTTTATAAAATGTAAACACAT  1150
      || ||||||   ||||||| |||||| |||||||| |||||||||| || 
seq2  GTTAAGTTA--GTTTGAGA-ATTTAC-TTTTTTAT-AAATGTAAAC-CA-  1132

seq1  TTCGATAGAAGAAATGAC  1168
      ||||||||||| ||||||
seq2  TTCGATAGAAG-AATGAC  1149


seq1: chr3_77889594_77890645
seq2: B6Ng01-208H03.g_62_1109 (reverse)

seq1  ATATAT--TGTCATTGGAAACCAGAAGCTGATAGTTACAGTGGTCAGCCA  48
      ||||||  ||||||  |||| |||||||||||||||||||||||||| ||
seq2  ATATATTATGTCAT--GAAA-CAGAAGCTGATAGTTACAGTGGTCAG-CA  46

seq1  GCATTCTCTTCAGTAGTGTTCTTCAGGTGACTTCTCTTAAGTTTTTGGTG  98
      ||| |||||||||||||| |||||||||||||||||||||  ||||||||
seq2  GCA-TCTCTTCAGTAGTG-TCTTCAGGTGACTTCTCTTAAAGTTTTGGTG  94

seq1  AGGAACCTGCCTTGAGCTTCCTGTAACAGCTCATTGATTAGGGCAAAGAA  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGCCTTGAGCTTCCTGTAACAGCTCATTGATTAGGGCAAAGAA  144

seq1  GTATTCTAGGAGTTAGAACATGTCACCTCACATACCCTCTCCAGTTCCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTATTCTAGGAGTTAGAACATGTCACCTCACATACCCTCTCCAGTTCCA-  193

seq1  CCATTGCATCCATTCCAAGGTCC-TTCTCTTCTTTAGGAATTTCTGTCAC  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATTGCATCCATTCCAAGGTCCTTTCTCTTCTTTAGGAATTTCTGTCAC  243

seq1  TACAGCTTCAGATATAGTGAGCAAGGAGGCCACCCCAGCAGCATCCATTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTCAGATATAGTGAGCAAGGAGGCCACCCCAGCAGCATCCATTA  293

seq1  AGGCAGTTCTTAAATTTTTGTTGTATCAATGATTCCCTTTTGCACCATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTCTTAAATTTTTGTTGTATCAATGATTCCCTTTTGCACCATGT  343

seq1  GAAAAAATCTCCCAGCTTGATGTCATAACCAACTTCTGAGGAACTCTGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATCTCCCAGCTTGATGTCATAACCAACTTCTGAGGAACTCTGTA  393

seq1  GAATTTGCTCAACTATCACAGATCCTTTGTCATCTGCATTCTTAGCAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCTCAACTATCACAGATCCTTTGTCATCTGCATTCTTAGCAATT  443

seq1  GCCATTGGAGGAATTTTAAGTGCTCTTTTAATAATTTCTATACCTATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGAGGAATTTTAAGTGCTCTTTTAATAATTTCTATACCTATTTT  493

seq1  CTGATCTTCATTAGAAGGCTTGAATGAATCCAAGGCTGGGACACACCGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTCATTAGAAGGCTTGAATGAATCCAAGGCTGGGACACACCGAA  543

seq1  GCAGAGCACAGCCCCCTCCTAGAACAATGCCTTCTTCAACAGCTGCTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCACAGCCCCCTCCTAGAACAATGCCTTCTTCAACAGCTGCTCCT  593

seq1  GTAGCACTGAGAATATCTGTAACTCTGTCTTTCTTCTCATTCACTTCAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTGAGAATATCTGTAACTCTGTCTTTCTTCTCATTCACTTCAAC  643

seq1  ATCACTTGTCCCTCCAACCTTCAACACAGTTACTCCATCTGAAAGTTTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTGTCCCTCCAACCTTCAACACAGTTACTCCATCTGAAAGTTTAG  693

seq1  CAACTTGCTTGTTTAGCTTTTCCTTTTCCTATTCGCAAGTTGTGATGTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCTTGTTTAGCTTTTCCTTTTCCTATTCGCAAGTTGTGATGTCT  743

seq1  AGCTGCTCAGGGATTTCTTGAATACATTTTTCAATGTGAGCTTTGTCAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCAGGGATTTCTTGAATACATTTTTCAATGTGAGCTTTGTCAAC  793

seq1  TTTTCCTTTCAAAAGTATGGCATCATCTTAGGTGACAATGACCTCTCCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTCAAAAGTATGGCATCATCTTAGGTGACAATGACCTCTCCAA  843

seq1  CTATTCCTAAGTCATGAGCTTGAAAATCTTGAAGATTTAGATTCAAGCCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTAAGTCATGAGCTTGAAAATCTTGAAGATTTAGATTCAAGCCC  893

seq1  TCTTATCCAAACACAGCACCACCAGTAACAATAGCTATATCTTTAAGCCG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCAAACACAGCACCACCAGTAACAATAGCTATATCTTTAAGCCG  943

seq1  GTTCTTCCTATTGTTCCCAAACCCAGGAGCTTTGACTGCAGGTACAACGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCTATTGTTCCCAAACCCAGGAGCTTTGACTGCAGGTACAACGA  993

seq1  ACTGAATACTAGAAATTTTCTTTGCACTCAACAAAACATAGGCATGTAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATACTAGAAATTTTCTTTGCACTCAACAAAACATAGGCATGTAGG  1043

seq1  AATTC  1052
      |||||
seq2  AATTC  1048


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