BAC Information

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BAC

Clone NameB6Ng01-208I09
Chromosome3 (Build37)
Map Location 56,268,083 - 56,269,287
singlet/doubletsinglet
Overlap genenone
Upstream geneDclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208I09.bB6Ng01-208I09.g
ACCGA027383GA027384
length1,1791,157
definitionB6Ng01-208I09.b B6Ng01-208I09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcatctgaaaacaccacagccattttagaaaaatatgggccg
acatctttgtcttatacgcttgaggataggaatattaaagcactgatact
ggggtcataacgagttttagttttctcttatcccacagttgttggttttt
ctcacattgatttcttcagctgtgcttggctttactccacagaagtggga
tatagtttcataaattttagatggagagagtgtgtgtagatttcatttca
tttctcttatcacgaggagcttctggcaggtctcagccttgtgaaacatt
ccccagagccctttgtgtcaggagaagcaagagagatttacaaacatgtc
cactggtttgtttgcttatgtatacagtcctcaccttgtccatgaagtgt
tgcagaagggctgcaaatccttatttccgtggagaaggctgagggtggag
ctgtgtgcccattctgcggcccttcttgttaacttcagtaatgctctgaa
taagtctcggatgttggaaaccaggattttggaaaatgggccttacatga
tgtgattaggtcctgaggggctcctctcatgaacagattaacactgcgcc
atgggtagtagctactgtgggcataggcatggtagaaaagcgagtttcat
ctcctgttctctgtgctcatatgctcttcttttgccctgttaaaatgtgg
tagaaagaccatcaaggcaggttattctttatggcttcctaacctccaga
aattttaaccaaacaaacctgttgctcattgtaaattactcagcctttgt
agaacaaaagtgataatttaggccaggaatcttcacacaaagaaactcac
cctaactgtaagagccaaagttaacctgtaagcctccacaaggaaacttc
ctggaatgctgggagtcatagttcttgggaaatatcaaggtacttgtttt
atttccctaaacagattttttttgacaactacatcacatgtgcttgatca
cacaaagcagagtatgtccaggtgtatattttgcccctgatgacatagta
gagtgcatgtattgtgggcttgccctttagcctctgtaaacgtgtttggc
tccattcttggacttagagtgacctggtccgagaactctttgcgaccaga
ttacctaagcctgacctgattggctcaga

gaattctcacatgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaaattcaggtgacagcagatgctg
gcgaggatgtggagaaagaggaacactcctccattgttggtgggattgca
ggcttgtacaaccactctggaaatctgtctggcggttcctcagaaaattg
gacatagtactaccggaggatccagcaatacctctcctgggcatatatcc
agaagatgccccaactggtaggaaggacacatgctccactatgttcatag
cagccttatttataatagccagaggctggaaggaacccagatgcccctca
acagaggaatgaatacagaaaatgtggtacatctacacaatggagtacta
ctcagctattaaaaagaatgaatttgtgaagttcctggccaaatggatgg
acctggagggcatcatcctgagtgaggtaacacattcacaaaggaactca
cacaatatccactgataagtggatattagcccaaaacctaggatacccaa
gatataagatacaatttcctaaacacatgaaactcaagaaaaatgaagac
tgaagtgtggacactatgcccctccttagaagtgggaacaaaacaccctt
ggaaggagttgcagagacaaagttttggagctgagatgaaaggatggacc
atgtagagactgccttatccagggatccaccccataatcagcatccaaac
gctgacaccattgcatacactagcaagattttatcgaagggacccagatg
tagctgtctcttgtgagactatgccggggcctagcaaacacagaagtgga
tgcccacagtcagctagtggatggatcacagggctcccaatggaggagct
agagaagtacccaaggagctaaagggatctgcaccgtatagtggatccaa
cattattgaactaccagtaccccggagcctcttgacttctagctgcatat
gttatcaaagattggctagttcgggccattcctgaaagagaggccattgg
gacaccacaaaccttatatgcctgaccagtcaacgctcatggccagaggt
ggagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56268083_56269287
seq2: B6Ng01-208I09.b_45_1223

seq1  GAATTCTTTCATCTGAAAACACCACAGCCATTTTAGAAAAATATGGGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATCTGAAAACACCACAGCCATTTTAGAAAAATATGGGCCG  50

seq1  ACATCTTTGTCTTATACGCTTGAGGATAGGAATATTAAAGCACTGATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTGTCTTATACGCTTGAGGATAGGAATATTAAAGCACTGATACT  100

seq1  GGGGTCATAACGAGTTTTAGTTTTCTCTTATCCCACAGTTGTTGGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATAACGAGTTTTAGTTTTCTCTTATCCCACAGTTGTTGGTTTTT  150

seq1  CTCACATTGATTTCTTCAGCTGTGCTTGGCTTTACTCCACAGAAGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTGATTTCTTCAGCTGTGCTTGGCTTTACTCCACAGAAGTGGGA  200

seq1  TATAGTTTCATAAATTTTAGATGGAGAGAGTGTGTGTAGATTTCATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTCATAAATTTTAGATGGAGAGAGTGTGTGTAGATTTCATTTCA  250

seq1  TTTCTCTTATCACGAGGAGCTTCTGGCAGGTCTCAGCCTTGTGAAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATCACGAGGAGCTTCTGGCAGGTCTCAGCCTTGTGAAACATT  300

seq1  CCCCAGAGCCCTTTGTGTCAGGAGAAGCAAGAGAGATTTACAAACATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCCCTTTGTGTCAGGAGAAGCAAGAGAGATTTACAAACATGTC  350

seq1  CACTGGTTTGTTTGCTTATGTATACAGTCCTCACCTTGTCCATGAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTTGTTTGCTTATGTATACAGTCCTCACCTTGTCCATGAAGTGT  400

seq1  TGCAGAAGGGCTGCAAATCCTTATTTCCGTGGAGAAGGCTGAGGGTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGGGCTGCAAATCCTTATTTCCGTGGAGAAGGCTGAGGGTGGAG  450

seq1  CTGTGTGCCCATTCTGCGGCCCTTCTTGTTAACTTCAGTAATGCTCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCCCATTCTGCGGCCCTTCTTGTTAACTTCAGTAATGCTCTGAA  500

seq1  TAAGTCTCGGATGTTGGAAACCAGGATTTTGGAAAATGGGCCTTACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCGGATGTTGGAAACCAGGATTTTGGAAAATGGGCCTTACATGA  550

seq1  TGTGATTAGGTCCTGAGGGGCTCCTCTCATGAACAGATTAACACTGCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAGGTCCTGAGGGGCTCCTCTCATGAACAGATTAACACTGCGCC  600

seq1  ATGGGTAGTAGCTACTGTGGGCATAGGCATGGTAGAAAAGCGAGTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAGTAGCTACTGTGGGCATAGGCATGGTAGAAAAGCGAGTTTCAT  650

seq1  CTCCTGTTCTCTGTGCTCATATGCTCTTCTTTTGCCCTGTTAAAATGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTCTCTGTGCTCATATGCTCTTCTTTTGCCCTGTTAAAATGTGG  700

seq1  TAGAAAGACCATCAAGGCAGGTTATTCTTTATGGCTTCCTAACCTCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGACCATCAAGGCAGGTTATTCTTTATGGCTTCCTAACCTCCAGA  750

seq1  AATTTTAACCAAACAAACCTGTTGCTCATTGTAAATTACTCAGCCTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACCAAACAAACCTGTTGCTCATTGTAAATTACTCAGCCTTTGT  800

seq1  AGAACAAAAGTGATAATTTAGGCCAGGAATCTTCACACAAAGAAACTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAAGTGATAATTTAGGCCAGGAATCTTCACACAAAGAAACTCAC  850

seq1  CCTAACTGTAAGAGCCAAAGTTAACCTGTAAGCCTCCACAAGGAAACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGTAAGAGCCAAAGTTAACCTGTAAGCCTCCACAAGGAAACTTC  900

seq1  CTGGAATGCTGGGAGTCATAGTTCTTGGGAAATATCAAGGTACTTGTTTT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGGAATGCTGGGAGTCATAGTTCTTGGGAAATATCAAGGTACTTG-TTT  949

seq1  TATTTCCCTAAACAGATTTTTTTTGAACCAACTACATCACATGTGCTTGA  1000
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TATTTCCCTAAACAGATTTTTTTTGA--CAACTACATCACATGTGCTTGA  997

seq1  TCACACAAAGGCAGGAAGTATGTCCAGGTGTATA-TTTGCCCCTGATTGG  1049
      ||||||||| ||||  |||||||||||||||||| ||||||||||||  |
seq2  TCACACAAA-GCAG--AGTATGTCCAGGTGTATATTTTGCCCCTGAT--G  1042

seq1  ACATAGTAGGAAGTGCAATGTATTGTGGGTTTTGCCCTTTTAAGCTCCTG  1099
      |||||||||  ||||| ||||||||||||  |||||||||  |||  |||
seq2  ACATAGTAG--AGTGC-ATGTATTGTGGG-CTTGCCCTTT--AGCCTCTG  1086

seq1  TAAAACGTGTTTTGTGCTCATATCTTGGGAACCTAGAGGTGGACCTGGTC  1149
      | ||||||||||   ||||   ||||||  || |||||   |||||||||
seq2  T-AAACGTGTTT--GGCTCCATTCTTGG--ACTTAGAG--TGACCTGGTC  1129

seq1  AGAG-ACTCTTTTGCTGACCAGTATTTACTTAAAGCTTGCTTCGAATTTG  1198
       ||| |||| ||||| ||||||   |||| | |||| ||    ||  |||
seq2  CGAGAACTC-TTTGC-GACCAG--ATTACCT-AAGCCTGACCTGA--TTG  1172

seq1  GCTCAGA  1205
      |||||||
seq2  GCTCAGA  1179


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