BAC Information

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BAC

Clone NameB6Ng01-208L02
Chromosome3 (Build37)
Map Location 88,139,379 - 88,140,380
singlet/doubletsinglet
Overlap geneSmg5
Upstream geneCd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79
Downstream genePaqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208L02.bB6Ng01-208L02.g
ACCGA027502GA027503
length5201,007
definitionB6Ng01-208L02.b B6Ng01-208L02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
actgtgcagttgagggtgaccttgatgccacctctcttccctgagttcga
ggctcccagtcaggagccacaccagcacaactggtttccatgatgcttgg
ccccagggctttgtagatgttgcgaaagcccttggctaagcttccgcctc
accctctttgctcttttcctttttattcactctagggggcgctgccaacc
ttagttgaacatctctagagctgccccactccagacatacagaggtgtgg
ttcaggtcgctccaaacaacggcaggtggacaacagagagcatcacactg
gctgtggtggcacacacttttagttccagcacttgggaggcagaggcagg
tggatatctatgagttcaaggccaactttatctagtgatcaaccttatgc
aggccaccagagatacatagtgagaccctgtcttttttcgttttgttttg
tttttttcaagacagtttctctatatagccctggctgtcctggaactcac
tctgtagaccagtcaggctg
gaattcctttaaaaaacaagcaacttcaggagccacccctcaggcgcgct
gggattttggcagctgacttgaccttgtgcatgccgatctccacaacctc
cggatcttaaaatcttttcgctgcccctcttctgcaacgatgtctgattc
aatgatagctggcccattcgttttattattttatgcactttggcgttttg
cctctaaacatgtctgtatgagggtttcggaccccctggagctggagttt
cagatggttgtgagctgccatgtgggtagtcacttctccagcacctagct
gtcccatggcgagctttgcactctacggtctcttttcttttcccctggaa
acttaatttttttaaattcattttattttgggggctagggagcgtgacac
ggagctcgcgtgtgaagttcaggccaacctgctggagtcaattcacctta
taccatgcgggctccaggggtcgggctcaggttggccgcaagcgccttta
gccgctgagtcatctcgccagcgcgctctttttaaacttgagacagggtc
tctgcacgtagcagggtgggaactcgctgcaggttgcctcggctgccgac
gagctaggcggatgagcctgcgctagaacgctcagtttctctacatctgt
ggcaataaagtgtcccccgaggacttaagcccagcagaagccatgccacc
cacaaccagctcggttgacttcccggagagagaaggcaatttttcgcgag
acttggtgggttggtcgccggtccgcggcttggcggcagctatcgcgaga
tttgataggtggaggaggagccatctcaggcagccgcctcacagcgatgg
cggccgagcagggccggcggcagtggcggctgcgggtacagctggagacg
gcagtggaggcgccagtggtggggtggcggggtgcctgtggaccaggagg
tgccctcgggcccaggcaacatgagtcaagggccctccctccagggaaga
gcaccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88139379_88140380
seq2: B6Ng01-208L02.g_66_1072

seq1  GAATTCCTTTAAAAAACAAGCAACTTCAGGAGCCACCCCTCAGGCGCGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAAAAACAAGCAACTTCAGGAGCCACCCCTCAGGCGCGCT  50

seq1  GGGATTTTGGCAGCTGACTTGACCTTGTGCATGCCGATCTCCACAACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTGGCAGCTGACTTGACCTTGTGCATGCCGATCTCCACAACCTC  100

seq1  CGGATCTTAAAATCTTTTCGCTGCCCCTCTTCTGCAACGATGTCTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCTTAAAATCTTTTCGCTGCCCCTCTTCTGCAACGATGTCTGATTC  150

seq1  AATGATAGCTGGCCCATTCGTTTTATTATTTTATGCACTTTGGCGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGCTGGCCCATTCGTTTTATTATTTTATGCACTTTGGCGTTTTG  200

seq1  CCTCTAAACATGTCTGTATGAGGGTTTCGGACCCCCTGGAGCTGGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAACATGTCTGTATGAGGGTTTCGGACCCCCTGGAGCTGGAGTTT  250

seq1  CAGATGGTTGTGAGCTGCCATGTGGGTAGTCACTTCTCCAGCACCTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTGAGCTGCCATGTGGGTAGTCACTTCTCCAGCACCTAGCT  300

seq1  GTCCCATGGCGAGCTTTGCACTCTACGGTCTCTTTTCTTTTCCCCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGGCGAGCTTTGCACTCTACGGTCTCTTTTCTTTTCCCCTGGAA  350

seq1  ACTTAATTTTTTTAAATTCATTTTATTTTGGGGGCTAGGGAGCGTGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTTTTTAAATTCATTTTATTTTGGGGGCTAGGGAGCGTGACAC  400

seq1  GGAGCTCGCGTGTGAAGTTCAGGCCAACCTGCTGGAGTCAATTCACCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCGCGTGTGAAGTTCAGGCCAACCTGCTGGAGTCAATTCACCTTA  450

seq1  TACCATGCGGGCTCCAGGGGTCGGGCTCAGGTTGGCCGCAAGCGCCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCGGGCTCCAGGGGTCGGGCTCAGGTTGGCCGCAAGCGCCTTTA  500

seq1  GCCGCTGAGTCATCTCGCCAGCGCGCTCTTTTTAAACTTGAGACAGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGAGTCATCTCGCCAGCGCGCTCTTTTTAAACTTGAGACAGGGTC  550

seq1  TCTGCACGTAGCAGGGTGGGAACTCGCTGCAGGTTGCCTCGGCTGCCGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACGTAGCAGGGTGGGAACTCGCTGCAGGTTGCCTCGGCTGCCGAC  600

seq1  GAGCTAGGCGGATGAGCCTGCGCTAGAACGCTCAGTTTCTCTACATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGCGGATGAGCCTGCGCTAGAACGCTCAGTTTCTCTACATCTGT  650

seq1  GGCAATAAAGTGTCCCCCGAGGACTTAAGCCCAGCAGAAGCCATGCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAAGTGTCCCCCGAGGACTTAAGCCCAGCAGAAGCCATGCCACC  700

seq1  CACAACCAGCTCGGTTGACTTCCCGGAGAGAGAAGGCAATTTTTCGCGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAGCTCGGTTGACTTCCCGGAGAGAGAAGGCAATTTTTCGCGAG  750

seq1  ACTTGGTGGGTTGGTCGCCGGTCCGCGGCTTGGCGGCAGCTATCGCGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGGGTTGGTCGCCGGTCCGCGGCTTGGCGGCAGCTATCGCGAGA  800

seq1  TTTGATAGGTGGAGGAGGAGCCATCTCAGGCAGCCGCCTCACAGCGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGGTGGAGGAGGAGCCATCTCAGGCAGCCGCCTCACAGCGATGG  850

seq1  CGGCCGAGCAGGGCCGGCGGCAGTGGCGGCTGCGGGTACAGCTGGAGACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGCAGGGCCGGCGGCAGTGGCGGCTGCGGGTACAGCTGGAGACG  900

seq1  GCAGTGGAGGCGCCAGTGGT-GGGTGGCGGGG-GCCTGT-GACCAGGAGG  947
      |||||||||||||||||||| ||||||||||| |||||| ||||||||||
seq2  GCAGTGGAGGCGCCAGTGGTGGGGTGGCGGGGTGCCTGTGGACCAGGAGG  950

seq1  TGCCCTCGGGCCCAGGCACCATGAGCCAA-GGCCCT-CCTCCAGGGGAGA  995
      |||||||||||||||||| |||||| ||| |||||| ||||||||| |||
seq2  TGCCCTCGGGCCCAGGCAACATGAGTCAAGGGCCCTCCCTCCAGGGAAGA  1000

seq1  GCAGCGA  1002
      ||| |||
seq2  GCACCGA  1007