BAC Information

Click to search

BAC

Clone NameB6Ng01-208N19
Chromosome3 (Build37)
Map Location 83,671,251 - 83,832,447
singlet/doubletdoublet
Overlap geneD930015E06Rik
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208N19.bB6Ng01-208N19.g
ACCGA027629GA027630
length1,1711,074
definitionB6Ng01-208N19.b B6Ng01-208N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,671,251 - 83,672,159)(83,831,378 - 83,832,447)
sequence
gaattctcattacagacatgaatggcagcctacattacataatagtagaa
agaaggtgggttgtggtttaaagaggaactagaaagggttagtagaacag
aactcccctgatgcatgtttttcactaggccctgaggaatagcatactta
ggtatttactaagggacccctggtggtgggttatacaatagactagcatt
gcatcagacctttcacctggctcctgtgaataactgactttagatagggc
tggctgatcttatctcagttgtaaactttgcctggttcctgccagtcttt
ttgtacacatttctatgttttgtgtcagataacttcattgtaccttggct
gatgtgtcacctaatttctttgttttcttctgtaatatataagtctgatg
ctcgctttgagaaattacattcagatcaatactcccttgagttcgagttt
gtcatttttttgccaacttcctgcccacctgtaccgggaccctgattctc
ccgtggattgaggccagtccgtggcataccccgacatacctgtcacacaa
tgaaaatagcaagtaaacactgcattaatgccttagcctgctgaacacca
tagctcagcctggtttaccttaactatgctcagaacccaacgcccatgtt
aaagtgttccatgtcccatgtaatctacagaaaaaaactggaatgtttat
gtggaggcatttccacaccatctaaagctgaaggctcattaagtcattcg
acacgtaccagctgtagaagagtcctatgggcactgtgactgctcactct
caagccgtgcctacctcctgattcttttcttctgacctaatcctctgtgt
gtgaagatgtcacatggcattcccgaattgctctgagagaatgaattcag
tggacctcaatacaaaatgatgatccctttgccttctgctactgtaaggg
ggtgggatgatacttgccaggggtcaacttccacaacctcgacgctgaca
cgtggactgggcaatgaatgttgaaagctaagtcctccatatggccactg
gtatagcctgccttacaacgaattgcagtctcttaaaaaaagcccaagtt
catttccataacagtccctggatgtcgaaacattcatgaatctgcctcac
ctgactatttaagatacagca
gaattctttctgtgtagatttgcctcttcttgtttatgtatcttgtactt
catgtgagtattcatgctctggggtacagcccagcactagggttcccttc
tgctttcatgccattattgttaatcttattatgaagtcattagaatctct
ttatgcctttcaatagccttttaaaaaaataatttaatgagctgcaccac
aataccaacttttaatgatagatggacttgaagccaattaagctgtcttt
atcagttcaacaaaagcatgtgtttctgccttgatgttctagagcagcta
ctactataacaacttgagactagagaaataatcttgactgtgaaacagtc
tgctttatgggaaagcatggttggtactgccctggagcactagagatgca
ccgccaaggctgcttgaggtgaggcctgaccaggacatggctgttcaggg
tcgtgaggcctccagagcagcttgcctcttacctcactctccagtcgagg
aagctgtcagtgtaattggccttggtgacaattttgtttgtgttatcttg
acttcatcttctgtggaagctctgtaattgtatttggttgggagccagga
atgcactatttgaaaactctctaccttctctcctccccagccctcctcct
cccctgggtgttctcagatagcagcagcaatctactttgccaagaaagaa
agattgctttgggagattcgtgatgagagcgagtgaaccagagcgggtct
agcccttgcttgagtgaaggcgcgctgggaagctggcctggctccctggt
acacatctctttgatgagcttttttggagcacagtagtatttgataggat
ctgaaaagttttaagaattgctgaagaatgaataagttgttattttacct
ttaaaaaggattatagagggttggcaggatggctcagtggtttagagcgg
ccgactgctcttccgaaaggtctgggagtcaatctcagcaaccacatggg
tggccttacaaccatcgtatgaagattctgacaccttcttctggtggtgt
ctggaaacagcctacggcgtactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83671251_83672159
seq2: B6Ng01-208N19.b_292_1214

seq1  GCTGGCTGATCTTATCTCAGTTGTAAACTTTGCCTGGTTCCTGCCAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGATCTTATCTCAGTTGTAAACTTTGCCTGGTTCCTGCCAGTCT  50

seq1  TTTTGTACACATTTCTATGTTTTGTGTCAGATAACTTCATTGTACCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACACATTTCTATGTTTTGTGTCAGATAACTTCATTGTACCTTGG  100

seq1  CTGATGTGTCACCTAATTTCTTTGTTTTCTTCTGTAATATATAAGTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGTCACCTAATTTCTTTGTTTTCTTCTGTAATATATAAGTCTGA  150

seq1  TGCTCGCTTTGAGAAATTACATTCAGATCAATACTCCCTTGAGTTCGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGCTTTGAGAAATTACATTCAGATCAATACTCCCTTGAGTTCGAGT  200

seq1  TTGTCATTTTTTTGCCAACTTCCTGCCCACCTGTACCGGGACCCTGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTTTTGCCAACTTCCTGCCCACCTGTACCGGGACCCTGATTC  250

seq1  TCCCGTGGATTGAGGCCAGTCCGTGGCATACCCCGACATACCTGTCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGGATTGAGGCCAGTCCGTGGCATACCCCGACATACCTGTCACAC  300

seq1  AATGAAAATAGCAAGTAAACACTGCATTAATGCCTTAGCCTGCTGAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATAGCAAGTAAACACTGCATTAATGCCTTAGCCTGCTGAACAC  350

seq1  CATAGCTCAGCCTGGTTTACCTTAACTATGCTCAGAACCCAACGCCCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCAGCCTGGTTTACCTTAACTATGCTCAGAACCCAACGCCCATG  400

seq1  TTAAAGTGTTCCATGTCCCATGTAATCTACAGAAAAAAACTGGAATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTGTTCCATGTCCCATGTAATCTACAGAAAAAAACTGGAATGTTT  450

seq1  ATGTGGAGGCATTTCCACACCATCTAAAGCTGAAGGCTCATTAAGTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGGCATTTCCACACCATCTAAAGCTGAAGGCTCATTAAGTCATT  500

seq1  CGACACGTACCAGCTGTAGAAGAGTCCTATGGGCACTGTGACTGCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACGTACCAGCTGTAGAAGAGTCCTATGGGCACTGTGACTGCTCACT  550

seq1  CTCAAGCCGTGCCTACCTCCTGATTCTTTTCTTCTGACCTAATCCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCGTGCCTACCTCCTGATTCTTTTCTTCTGACCTAATCCTCTGT  600

seq1  GTGTGAAGATGTCACATGGCATTCCCGAATTGCTCTGAGAGAATGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGATGTCACATGGCATTCCCGAATTGCTCTGAGAGAATGAATTC  650

seq1  AGTGGAC--CCATACAAAATGATGATCCC-TTGGCTTCTGCTACTGT-AG  696
      |||||||  | |||||||||||||||||| ||| ||||||||||||| ||
seq2  AGTGGACCTCAATACAAAATGATGATCCCTTTGCCTTCTGCTACTGTAAG  700

seq1  GGGGTGGGATGATACTTGCCCAGGGTCACCTTCCCACAACCTCGACGCTG  746
      ||||||||||||||||||||  |||||| ||| |||||||||||||||||
seq2  GGGGTGGGATGATACTTGCCAGGGGTCAACTT-CCACAACCTCGACGCTG  749

seq1  ACACGTGGACT-GGCAATGAGTG-TGGAAGCTAAGTCTCCAATAT-GCCA  793
      ||||||||||| |||||||| || || ||||||||||  | |||| ||||
seq2  ACACGTGGACTGGGCAATGAATGTTGAAAGCTAAGTCCTCCATATGGCCA  799

seq1  CTGGTATAG-CTG-CTTACCACG-ATTGCAGTCTCCT-AAAAAAGCCCAA  839
      ||||||||| ||| ||||| ||| ||||||||||| | ||||||||||||
seq2  CTGGTATAGCCTGCCTTACAACGAATTGCAGTCTCTTAAAAAAAGCCCAA  849

seq1  GGTCATTATCAT-ACAGT-CCTGGAGGTC-AGACATCCA-GAATCTGCCT  885
      | |||||  ||| ||||| |||||| ||| | |||| || ||||||||||
seq2  GTTCATTTCCATAACAGTCCCTGGATGTCGAAACATTCATGAATCTGCCT  899

seq1  CA-CTGGCTAATTTGAGATACAGCA  909
      || ||| || |||| ||||||||||
seq2  CACCTGACT-ATTTAAGATACAGCA  923

seq1: chr3_83831378_83832447
seq2: B6Ng01-208N19.g_69_1142 (reverse)

seq1  GAGTACGCTGTA-GCTGTTTTCAGACA-CACCAGAAGAGGGTGTCAG-AT  47
      |||||||| ||| ||||||| |||||| |||||||||| |||||||| ||
seq2  GAGTACGCCGTAGGCTGTTTCCAGACACCACCAGAAGAAGGTGTCAGAAT  50

seq1  CTCATTACGGATGGTTGTAA-GCCA-CCATGTGGTTGCTGGGATTTGAAC  95
      ||   ||| ||||||||||| |||| |||||||||||||| || ||||  
seq2  CTTCATAC-GATGGTTGTAAGGCCACCCATGTGGTTGCTGAGA-TTGACT  98

seq1  TCCAGACC-TTCGAAAGAGCAGTCGG-CGCTCTTAACCACTGAGCCATCT  143
       ||||||| |||| |||||||||||| |||||| ||||||||||||||| 
seq2  CCCAGACCTTTCGGAAGAGCAGTCGGCCGCTCTAAACCACTGAGCCATCC  148

seq1  TGCCAACCCTCTATAATTCTTTTTAAAGGTAAAATAACAACTTTATTCAT  193
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  TGCCAACCCTCTATAATCCTTTTTAAAGGTAAAATAACAAC-TTATTCAT  197

seq1  TCTTCAGCAATTCTTAAAACTTTTCAGATCCTATCAAATACTACTGTGCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCAATTCTTAAAACTTTTCAGATCCTATCAAATACTACTGTGCT  247

seq1  CCAAAAAAGCTCATCAAAGAGATGTGTACCAGGGAGCCAGGCCAGCTTCC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGCTCATCAAAGAGATGTGTACCAGGGAGCCAGGCCAGCTTCC  297

seq1  CAGCGCGCCTTCACTCAAGCAAGGGCTAGACCCGCTCTGGTTCACTCGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCGCCTTCACTCAAGCAAGGGCTAGACCCGCTCTGGTTCACTCGCT  347

seq1  CTCATCACGAATCTCCCAAAGCAATCTTTCTTTCTTGGCAAAGTAGATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACGAATCTCCCAAAGCAATCTTTCTTTCTTGGCAAAGTAGATTG  397

seq1  CTGCTGCTATCTGAGAACACCCAGGGGAGGAGGAGGGCTGGGGAGGAGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTATCTGAGAACACCCAGGGGAGGAGGAGGGCTGGGGAGGAGAG  447

seq1  AAGGTAGAGAGTTTTCAAATAGTGCATTCCTGGCTCCCAACCAAATACAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAGAGTTTTCAAATAGTGCATTCCTGGCTCCCAACCAAATACAA  497

seq1  TTACAGAGCTTCCACAGAAGATGAAGTCAAGATAACACAAACAAAATTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGCTTCCACAGAAGATGAAGTCAAGATAACACAAACAAAATTGT  547

seq1  CACCAAGGCCAATTACACTGACAGCTTCCTCGACTGGAGAGTGAGGTAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGCCAATTACACTGACAGCTTCCTCGACTGGAGAGTGAGGTAAG  597

seq1  AGGCAAGCTGCTCTGGAGGCCTCACGACCCTGAACAGCCATGTCCTGGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCTGCTCTGGAGGCCTCACGACCCTGAACAGCCATGTCCTGGTC  647

seq1  AGGCCTCACCTCAAGCAGCCTTGGCGGTGCATCTCTAGTGCTCCAGGGCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCACCTCAAGCAGCCTTGGCGGTGCATCTCTAGTGCTCCAGGGCA  697

seq1  GTACCAACCATGCTTTCCCATAAAGCAGACTGTTTCACAGTCAAGATTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAACCATGCTTTCCCATAAAGCAGACTGTTTCACAGTCAAGATTAT  747

seq1  TTCTCTAGTCTCAAGTTGTTATAGTAGTAGCTGCTCTAGAACATCAAGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGTCTCAAGTTGTTATAGTAGTAGCTGCTCTAGAACATCAAGGC  797

seq1  AGAAACACATGCTTTTGTTGAACTGATAAAGACAGCTTAATTGGCTTCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACATGCTTTTGTTGAACTGATAAAGACAGCTTAATTGGCTTCAA  847

seq1  GTCCATCTATCATTAAAAGTTGGTATTGTGGTGCAGCTCATTAAATTATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTATCATTAAAAGTTGGTATTGTGGTGCAGCTCATTAAATTATT  897

seq1  TTTTTAAAAGGCTATTGAAAGGCATAAAGAGATTCTAATGACTTCATAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGGCTATTGAAAGGCATAAAGAGATTCTAATGACTTCATAAT  947

seq1  AAGATTAACAATAATGGCATGAAAGCAGAAGGGAACCCTAGTGCTGGGCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAACAATAATGGCATGAAAGCAGAAGGGAACCCTAGTGCTGGGCT  997

seq1  GTACCCCAGAGCATGAATACTCACATGAAGTACAAGATACATAAACAAGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCAGAGCATGAATACTCACATGAAGTACAAGATACATAAACAAGA  1047

seq1  AGAGGCAAATCTACACAGAAAGAATTC  1070
      |||||||||||||||||||||||||||
seq2  AGAGGCAAATCTACACAGAAAGAATTC  1074