BAC Information

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BAC

Clone NameB6Ng01-208O17
Chromosome3 (Build37)
Map Location 115,079,001 - 115,080,326
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208O17.bB6Ng01-208O17.g
ACCGA027670GA027671
length1,1711,205
definitionB6Ng01-208O17.b B6Ng01-208O17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagggtcaaggaactgaaaacgctgatggctttattagggagtta
ctataatgtcaatctgtggaagtaaatactatcataaacgaaaatttgag
cagaagtgaaaggtagccacagaagatcactgtggttataaacatttagg
gatccagcagaagaagcaagggagactgtgaaaagatatcatctagatag
gaaattgagttttggatatattaacttatgaggcctaggtgtccttgata
tgaccatttcaaatacttcctaacaaggaaagctctcaaacagagtatgt
ttgctaggtattttctcatgacaacccgcgacagaatttaatgcttaaac
aagaattgagattttcacatctataggcaactgggtggctttactaaatg
acgaggttcaactgacctcaacttagcttgagcatatatctgtaaccaac
cagtaggtcactaaggaaccagcttctctagaatggtttcaaatgcaaga
gaaaaaaatagcatcaatattgcaaagggaagccctggcttgtgtccaga
acagtggcagggttctgagaaagatggaagaagaatgcagggcttcatca
aatcctgctggcaattagcacaccattaattctctcacaatgaattggcc
aggtcaagtctaagctgattccagaatcagagctagtgaggactacaaat
atcagaaattaagggcatggaggacaggggttataaattagagcccatga
tgcaattaagttgccataaatggatgagaagtttacagaagaataacaaa
gagtgcgtagaaatgacacaaattagtctaaagcaatagataaatgtgta
caaaatctggagttgctgcccagccaacttttctgtcttctttgtctatt
agatgttttctttttaatgatgagctatgaaagtcacaaagtgattgaaa
tgattcaagagaggtagttagttagttccaagggagatggggctatcagt
ggtaacaagaccactggtgggcatacatgcgaaatcagtgggagaagctt
tataacacttgttggataattagaacatgaggaacaaaaaaggggagggg
agtgtaccactgaatgaatctttctgttaaatgatgctaattcagtatat
ctcaggaatgagagaaattac

gaattctaggaaaatacaaacaagccacagaagcagacaaataaaaccat
tcaaggcctgaaaattgagatcataaagaaaacccaaggtgggggaaatc
tggaaatgaaaaatttaggaattcaaaatacttgagctaatagatgttac
aaatggaatggacctaacatacatacatacatacatacatacatacatac
atacatacatacataatttcaccaaaacacaaaagaatatactttatttt
ctgtatctcaaggagctttctccacaattgatcatatacttggacacaaa
gcaagtcttagtacatacaggaaaattgaaataaaccaccaagaattaaa
gttatatgccgctaccaacagaaaaaataagttatgagctcatggaaact
gaacgacactctactgaatgactaccatgtagagttaaaaaaatacagaa
aggaaagactttctagaactcaataaaatgaatacacagcatacccatac
ttaggggacaaaaaagaaagtgctactaagaggaaatttaatagcagtat
gtgcctactttttcaaaaattttttcaaatttttgaaatttcagcaacag
cacatctgaaatttctagaataaaaagaagtaatcacaccccagagaaga
cagaaagaaataatcaaaccatgaactgaaatcattaaatggatacatta
aatggaaaagagaaagttccttgagtaaattaacaagatagacaaatgct
tttccaaattaactaacaggcagtgagagactctctaaattaacataacc
agaaatcacaaaaagggaggtcttaccactgccaatttcaagttgtacta
cagaagtttagtaatagaaaccacatagtattgtcataaaaacagacaaa
gtgatcaatcaaattgaattaggccgaagaacataaatccatagacatat
ggacacctaaatttatattaaagaaggccagaaaatatacacagggaaag
agtaagcatcttcacaattagaagaaagcactatatccatatttatgact
tacacaaaactcagtctagtgaatcaaagatgtcattagcagattactga
ctgatagaagagactggtaattggccttgaactcattggccaggaacaaa
actctctctaaaccagaaaatagccaatacctaatagagtctaaaaaatg
gggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115079001_115080326
seq2: B6Ng01-208O17.b_49_1219

seq1  GAATTCAGGGTCAAGGAACTGAAAACGCTGATGGCTTTATTAGGGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTCAAGGAACTGAAAACGCTGATGGCTTTATTAGGGAGTTA  50

seq1  CTATAATGTCAATCTGTGGAAGTAAATACTATCATAAACGAAAATTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGTCAATCTGTGGAAGTAAATACTATCATAAACGAAAATTTGAG  100

seq1  CAGAAGTGAAAGGTAGCCACAGAAGATCACTGTGGTTATAAACATTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGAAAGGTAGCCACAGAAGATCACTGTGGTTATAAACATTTAGG  150

seq1  GATCCAGCAGAAGAAGCAAGGGAGACTGTGAAAAGATATCATCTAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCAGAAGAAGCAAGGGAGACTGTGAAAAGATATCATCTAGATAG  200

seq1  GAAATTGAGTTTTGGATATATTAACTTATGAGGCCTAGGTGTCCTTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAGTTTTGGATATATTAACTTATGAGGCCTAGGTGTCCTTGATA  250

seq1  TGACCATTTCAAATACTTCCTAACAAGGAAAGCTCTCAAACAGAGTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTTCAAATACTTCCTAACAAGGAAAGCTCTCAAACAGAGTATGT  300

seq1  TTGCTAGGTATTTTCTCATGACAACCCGCGACAGAATTTAATGCTTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGTATTTTCTCATGACAACCCGCGACAGAATTTAATGCTTAAAC  350

seq1  AAGAATTGAGATTTTCACATCTATAGGCAACTGGGTGGCTTTACTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGAGATTTTCACATCTATAGGCAACTGGGTGGCTTTACTAAATG  400

seq1  ACGAGGTTCAACTGACCTCAACTTAGCTTGAGCATATATCTGTAACCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGTTCAACTGACCTCAACTTAGCTTGAGCATATATCTGTAACCAAC  450

seq1  CAGTAGGTCACTAAGGAACCAGCTTCTCTAGAATGGTTTCAAATGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTCACTAAGGAACCAGCTTCTCTAGAATGGTTTCAAATGCAAGA  500

seq1  GAAAAAAATAGCATCAATATTGCAAAGGGAAGCCCTGGCTTGTGTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATAGCATCAATATTGCAAAGGGAAGCCCTGGCTTGTGTCCAGA  550

seq1  ACAGTGGCAGGGTTCTGAGAAAGATGGAAGAAGAATGCAGGGCTTCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCAGGGTTCTGAGAAAGATGGAAGAAGAATGCAGGGCTTCATCA  600

seq1  AATCCTGCTGGCAATTAGCACACCATTAATTCTCTCACAATGAATTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCTGGCAATTAGCACACCATTAATTCTCTCACAATGAATTGGCC  650

seq1  AGGTCAAGTCTAAGCTGATTCCAGAATCAGAGCTAGTGAGGACTACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGTCTAAGCTGATTCCAGAATCAGAGCTAGTGAGGACTACAAAT  700

seq1  ATCAGAAATTAAGGGCATGGAGGACAGGGGTTATAAATTAGAGCCCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAATTAAGGGCATGGAGGACAGGGGTTATAAATTAGAGCCCATGA  750

seq1  TGCAATTAAGTTGCCATAAATGGATGAGAAGTTTACAGAAGAATAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAAGTTGCCATAAATGGATGAGAAGTTTACAGAAGAATAACAAA  800

seq1  GAGTGCGTAGAAATGACACAAATTAGTCTAAAGCAATAGATAAATGTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCGTAGAAATGACACAAATTAGTCTAAAGCAATAGATAAATGTGTA  850

seq1  CAAAATCTGGAGTTGCTGCCCAGCCAACTTTTCTGTCTTCTTTGTCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTGGAGTTGCTGCCCAGCCAACTTTTCTGTCTTCTTTGTCTATT  900

seq1  AGATGTTTTCTTTTTAATGATGAGCTATGAAAGTCACAAAGTGATTGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTCTTTTTAATGATGAGCTATGAAAGTCACAAAGTGATTGAAA  950

seq1  TGATTCAAGAGAGGTAGTTAGTTAGTTCC-AGGGAGATGGGGCTATCAGT  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGATTCAAGAGAGGTAGTTAGTTAGTTCCAAGGGAGATGGGGCTATCAGT  1000

seq1  GGTAACAAGACCACT-GTGGGCATACATGCGAAAATCAGTGGGAGAGGCT  1048
      ||||||||||||||| ||||||||||||||| |||||||||||||| |||
seq2  GGTAACAAGACCACTGGTGGGCATACATGCG-AAATCAGTGGGAGAAGCT  1049

seq1  TTATAACACCTTGTTGGAT-ATTAG-ACATGAGGAAC-AAAAAGGGGAGG  1095
      |||||||| |||||||||| ||||| ||||||||||| ||||||||||||
seq2  TTATAACA-CTTGTTGGATAATTAGAACATGAGGAACAAAAAAGGGGAGG  1098

seq1  GAGTTGTACCACTTGATG-ATCTTTCTGTTAAATTGGATGCTAATTTCAG  1144
      |   |||||||||  ||| |||||||||||||||  |||||||| |||||
seq2  GGAGTGTACCACTGAATGAATCTTTCTGTTAAAT--GATGCTAA-TTCAG  1145

seq1  TAT-TCTCAGGGATGA-AGAAATTTCAGGTAGGCTCCATGAGCTCAGGAG  1192
      ||| ||||||| |||| ||||||| |                        
seq2  TATATCTCAGGAATGAGAGAAATTAC------------------------  1171

seq1  GATTGTCTCCTTCAGTGCACCTGTTCACAACTCAGGATTACACAGAAACC  1242
                                                        
seq2  --------------------------------------------------  1171

seq1  TGTTCATGCCAGGGGATTTCACTCCAGCAATTAAATAAAACTGTCAAGAG  1292
                                                        
seq2  --------------------------------------------------  1171

seq1  ACAAAGGCAAGATTGAACTCAAAAGAGAAATTAC  1326
                                        
seq2  ----------------------------------  1171


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