BAC Information

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BAC

Clone NameB6Ng01-208P19
Chromosome3 (Build37)
Map Location 15,469,055 - 15,689,669
singlet/doubletdoublet
Overlap geneLOC668101
Upstream geneSlc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1
Downstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208P19.bB6Ng01-208P19.g
ACCGA027722GA027723
length1,1131,180
definitionB6Ng01-208P19.b B6Ng01-208P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,469,055 - 15,470,170)(15,688,493 - 15,689,669)
sequence
gaattctttgttcagctctgagccccattttttaatggggttattcgatt
ttctggagcccaccttcttgagctctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgttttttgccttgcagaagctttgcaatttta
tgaggtcccatttatcgattctcgaccttacagcacaagccattgctgtt
ctattcaggaatatttcccctgtacccaaatctttgaggctttcccctac
tttctcctctatattttcttattatcctgttcatttggttgaatagggtt
tgattcagatagaaaattgctataacttgtcctatccacaaaagaagctc
agacttgaatttaggacagccaatttaagaattcttctcatatgcttcct
ttcatttgttctttctttcttctcttttggagtgaaggattgaaatcatt
tcctcacatttgttaatttcatgctcactattaagttactaacccagccc
tatttccaccatcatttcttcattgtagctacagtaagttattaggattt
ttggtaatatgttaagtagagaaagaataaaaatacatcaaagcagacag
aaataaccaaccacccctttgcatctctatgataaattataatggccaac
tgtttaaaaggaaaaaaagtctttcttagctcctgctgctgaccacatga
cttatgactttatgagacacagacacagtcagatgtgcagtttacttatt
tccaaggagattttcattaaaactaatttcaaaaccagtaatccctatta
ggtgacagcagtcaaaactcttttattctcacctcataaataatgtgttg
ctttctcttgctgcatataatttgccaagatttctagtcttaaaatttca
tgtccttaaatgatcttattgaatagattatatatatatatatatatata
ttttacctttccatatatatacatacatatatatataacattgtgcttta
tatgtgtgtgcatcagtgtacacacagggaaacatgatttttaaatcttt
atatgtttcttaa
gaattccctggacaggcaaagtataaatatcagaaacttcatggaagaga
atgtaattgaaaaggggaacaccttgctgttgcaaaaggcatggatgaaa
cacacacggcagatgaactgccacttggtgcaaagggggaaatgttagaa
attattgaacaagctaaaagtatcaaaactgatatacttgggttcttgta
ggggcatgtggggtttgataaacaaacaaagaaacaaagaaacaaacaaa
taaaaaaaaagagagaagttattcttgttcagcctaaccaaagtatgcag
aactaagctgattcactacataatatttaggtctctgctgggtaggaaga
gttctccgaaagtaagaagtagtagatccactattgtaaaaaataatttt
gtttttctgagacatcgtctttctttgtagttttgaaagttttggaaatc
accatgtaggcccagatagccttgaacatataagatcaatttggctctgc
cacataagtgctggaattgattatgtgatgaaccatcacatccatattcc
agaaatattccacttgtttctttactgtggtataaaaagggttctttgcc
tgggtgattcaccatgcccacctagaatagtaagtttcaaaaaaggtcaa
aattaaggtctccaaaccatcaattgtctttaatgtgatggtttttggtt
tttgttctgttctattctgcttgttttgctttgttttgctttgctactat
aaagcacctctgaacatcatttaggaactatatcatgcatcaaagcctcc
aaacacttttgttatcactagcccttcaaaaggaggaagctgcaaagaac
ctgggggacaattttagcttctagacaaggaaagaaaatgtttctttgag
gtgtttttacactgaatattctgtcatcttctatctcctattcttaccac
aaaggtcccttcagagccagtagaataaaaaaaaaggttcttgagcccct
gttcacagtatgaacagttgttttctgagtgcatctatgttgtctgtaat
atattgccatgggtttgaccatcactgcacactatagtccatgttcctct
ggatgcaaactcttgtcctgaatatacctctccacaaatctcacagattg
atgcttctatttagcctgtatcaatacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_15469055_15470170
seq2: B6Ng01-208P19.b_46_1158

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTCGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTCGATT  50

seq1  TTCTGGAGCCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGCCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACAGTGTTTTTTGCCTTGCAGAAGCTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACAGTGTTTTTTGCCTTGCAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTATCGATTCTCGACCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTATCGATTCTCGACCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATATTTCCCCTGTACCCAAATCTTTGAGGCTTTCCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATATTTCCCCTGTACCCAAATCTTTGAGGCTTTCCCCTAC  300

seq1  TTTCTCCTCTATATTTTCTTATTATCCTGTTCATTTGGTTGAATAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATATTTTCTTATTATCCTGTTCATTTGGTTGAATAGGGTT  350

seq1  TGATTCAGATAGAAAATTGCTATAACTTGTCCTATCCACAAAAGAAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGATAGAAAATTGCTATAACTTGTCCTATCCACAAAAGAAGCTC  400

seq1  AGACTTGAATTTAGGACAGCCAATTTAAGAATTCTTCTCATATGCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAATTTAGGACAGCCAATTTAAGAATTCTTCTCATATGCTTCCT  450

seq1  TTCATTTGTTCTTTCTTTCTTCTCTTTTGGAGTGAAGGATTGAAATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTTCTTTCTTTCTTCTCTTTTGGAGTGAAGGATTGAAATCATT  500

seq1  TCCTCACATTTGTTAATTTCATGCTCACTATTAAGTTACTAACCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACATTTGTTAATTTCATGCTCACTATTAAGTTACTAACCCAGCCC  550

seq1  TATTTCCACCATCATTTCTTCATTGTAGCTACAGTAAGTTATTAGGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACCATCATTTCTTCATTGTAGCTACAGTAAGTTATTAGGATTT  600

seq1  TTGGTAATATGTTAAGTAGAGAAAGAATAAAAATACATCAAAGCAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATATGTTAAGTAGAGAAAGAATAAAAATACATCAAAGCAGACAG  650

seq1  AAATAACCAACCACCCCTTTGCATCTCTATGATAAATTATAATGGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAACCACCCCTTTGCATCTCTATGATAAATTATAATGGCCAAC  700

seq1  TGTTTAAAAGGAAAAAAAGTCTTTCTTAGCTCCTGCTGCTGACCACATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAGGAAAAAAAGTCTTTCTTAGCTCCTGCTGCTGACCACATGA  750

seq1  CTTATGACTTTATGAGACACAGACACAGTCAGATGTGCAGTTTACTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGACTTTATGAGACACAGACACAGTCAGATGTGCAGTTTACTTATT  800

seq1  TCCAAGGAGATTTTCATTAAAACTAATTTCAAAACCAGTAATCCCTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAGATTTTCATTAAAACTAATTTCAAAACCAGTAATCCCTATTA  850

seq1  GGTGACAGCAGTCAAAACTC-TTTATTCTCACCTCATAAATAATGTGTTG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTGACAGCAGTCAAAACTCTTTTATTCTCACCTCATAAATAATGTGTTG  900

seq1  CTTTCTCTTGCTGCATATAATTTGCCAAGATTTCTAGTCTTAAAATTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTGCTGCATATAATTTGCCAAGATTTCTAGTCTTAAAATTTCA  950

seq1  TGTCCTTAAAATGATCTTATTGAATAGATTATATATATATATATATATAT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTT-AAATGATCTTATTGAATAGATTATATATATATATATATATAT  999

seq1  ATTTTACCTTTCCATATATATACATACATATATATATAACAATTGTGCTT  1049
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  ATTTTACCTTTCCATATATATACATACATATATATATAAC-ATTGTGC-T  1047

seq1  TTATATGTGTGTGCATCAGTGTACACACAGGGAAACATGATTTTTAAAAA  1099
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TTATATGTGTGTGCATCAGTGTACACACAGGGAAACATGATTTTT--AAA  1095

seq1  TCTTTAT-TGTTTCTTAA  1116
      ||||||| ||||||||||
seq2  TCTTTATATGTTTCTTAA  1113

seq1: chr3_15688493_15689669
seq2: B6Ng01-208P19.g_69_1247 (reverse)

seq1  AAAGTA-TGATACA-GCTAAATAGAAGCATCAATACTGGTGAGAATTGTG  48
      |||||| ||||||| ||||||||||||||||||| || |||||| |||||
seq2  AAAGTATTGATACAGGCTAAATAGAAGCATCAAT-CT-GTGAGATTTGTG  48

seq1  GAGA-GTATAATCCAGACAA-AG-TTGCAT-CAGA-GAACATGGACTATA  93
      |||| ||||| ||  ||||| || |||||| |||| ||||||||||||||
seq2  GAGAGGTATATTCAGGACAAGAGTTTGCATCCAGAGGAACATGGACTATA  98

seq1  GTGTGCAGTGATGGTCAACCCCATGGCAATATATTACAGAC-ACATAGAT  142
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GTGTGCAGTGATGGTCAAACCCATGGCAATATATTACAGACAACATAGAT  148

seq1  ACACTCAGAAAATAACTCTTCATACTGTGAACAGGGGCTC-AGAA-CTTT  190
       ||||||||||| |||| |||||||||||||||||||||| |||| ||||
seq2  GCACTCAGAAAACAACTGTTCATACTGTGAACAGGGGCTCAAGAACCTTT  198

seq1  TTTTTTATTCTACTGGCTCTGA--GGACC-TTGTGGTAAGAATAAGAGAT  237
      ||||||||||||||||||||||  ||||| |||||||||||||| |||||
seq2  TTTTTTATTCTACTGGCTCTGAAGGGACCTTTGTGGTAAGAATAGGAGAT  248

seq1  AGAAGATGAACAGAATATTCAGTGTAAAATCACCTCAAAGAAACATTTTC  287
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  AGAAGATG-ACAGAATATTCAGTGTAAAAACACCTCAAAGAAACATTTTC  297

seq1  TTT-TTTGTCTAGAAGCTAAAATTGTCCCCCAGGTTCTTTGCAGCATCCT  336
      |||  |||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTCCTTGTCTAGAAGCTAAAATTGTCCCCCAGGTTCTTTGCAGCTTCCT  347

seq1  CCTTTTGAAGAG-TAGTGAT---AAAAGTGTGTGGAGGCTTTGATGCATG  382
      |||||||||| | |||||||   |||||||| ||||||||||||||||||
seq2  CCTTTTGAAGGGCTAGTGATAACAAAAGTGTTTGGAGGCTTTGATGCATG  397

seq1  ATATAGTTCCTAAATGATGTTCAGAGGTGCTTTAGAGTAGCAAAGCAAAA  432
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATATAGTTCCTAAATGATGTTCAGAGGTGCTTTATAGTAGCAAAGCAAAA  447

seq1  CAAAGCAAAACAAGCAGAACAGAACAGAACAAAAAACAAAAACCATCACA  482
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  CAAAGCAAAACAAGCAGAATAGAACAGAACAAAAACCAAAAACCATCACA  497

seq1  TTAAAGACATTTGATGGTTTGGAGACCTTAATTTTGACCTTTTTTGAAAC  532
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACAATTGATGGTTTGGAGACCTTAATTTTGACCTTTTTTGAAAC  547

seq1  TTACTATTCTAGGTGGGCATGGTGAATCACCCAGGCAAAGAACCCTTTTT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTCTAGGTGGGCATGGTGAATCACCCAGGCAAAGAACCCTTTTT  597

seq1  ATACCACAGTAAAGAAACAAGTGGAATATTTCTGGAATATGGATGTGATG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACAGTAAAGAAACAAGTGGAATATTTCTGGAATATGGATGTGATG  647

seq1  GTGCATCACATAATCAATTCCAGCACTTATGTGGCAGAGCCAAATTGATC  682
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCACATAATCAATTCCAGCACTTATGTGGCAGAGCCAAATTGATC  697

seq1  TTATATGTTCAAGGCCATCTGAGCCTACATGGTGATTTCCAAAACTTTCA  732
      ||||||||||||||| ||||| ||||||||||||||||||||||||||||
seq2  TTATATGTTCAAGGCTATCTGGGCCTACATGGTGATTTCCAAAACTTTCA  747

seq1  AAACTACAAAGAAAGACGATATCTCAGAAAAACAAAATAATTATTTTTTA  782
      |||||||||||||||||||| ||||||||||||||   ||||||||||||
seq2  AAACTACAAAGAAAGACGATGTCTCAGAAAAACAA---AATTATTTTTTA  794

seq1  CAGTAGTGGATCTACTACTTCTTACTTTCGGAGAACTCTTCCTACCCAGC  832
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGGATCTACTACTTCTTACTTTCGGAGAACTCTTCCTACCCAGC  844

seq1  AGAGACCTAAATTGTATGTTGTGAATCAGCTTAGTTCTGCATGCTTTGGT  882
      ||||||||||||  ||||| |||||||||||||||||||||| |||||||
seq2  AGAGACCTAAATATTATGTAGTGAATCAGCTTAGTTCTGCATACTTTGGT  894

seq1  TAGGCTGAACAAGAATAACTTCTCTTTTCTTTTTTCTTTTTTTTTATTTC  932
      ||||||||||||||||||||||||          ||||||||||||||| 
seq2  TAGGCTGAACAAGAATAACTTCTC----------TCTTTTTTTTTATTTG  934

seq1  TTTGTTTCTTTGTTTCTTTGTTTGTTTATCAAACCCCACATGCCCCTACA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTGTTTCTTTGTTTGTTTATCAAACCCCACATGCCCCTACA  984

seq1  AGAACCCAAGTATATCAGTTTTGATACTTTTAGCTTGCTCAATAATTTCT  1032
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAACCCAAGTATATCAGTTTTGATACTTTTAGCTTGTTCAATAATTTCT  1034

seq1  AACATTT-CCCCTTTGCACCAAGTGGCAGTTCATCTGCCGTGTGTGTGTG  1081
      ||||||| |||||||||||||||||||||||||||||||  |||||||| 
seq2  AACATTTCCCCCTTTGCACCAAGTGGCAGTTCATCTGCC--GTGTGTGTT  1082

seq1  TCATCCATGCCTTTTGCAACAGCAAGGTGTT-CCCTTTTCAATTACATTC  1130
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCATCCATGCCTTTTGCAACAGCAAGGTGTTCCCCTTTTCAATTACATTC  1132

seq1  TCTTCCATGAAGTTCCTGATATTTATACTTTGCCTGTCCAGGGAATT  1177
      |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTCCATGAAGTTTCTGATATTTATACTTTGCCTGTCCAGGGAATT  1179