BAC Information

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BAC

Clone NameB6Ng01-209E03
Chromosome3 (Build37)
Map Location 117,532,077 - 117,695,652
singlet/doubletdoublet
Overlap geneSnx7, LOC100043260
Upstream geneLOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209E03.bB6Ng01-209E03.g
ACCGA027921GA027922
length1,0981,191
definitionB6Ng01-209E03.b B6Ng01-209E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,532,077 - 117,533,167)(117,694,469 - 117,695,652)
sequence
gaattcattaaaatatccaacttcatgactgaaatctctcatacatttaa
ggaaaggattaaactttaaaaaggagtttatctgccaagacatgtgcaga
gtgtgaagtttttagctgagtattgacctgatgggatgttaagtactttc
tacaaacactttaaacactttgttcttttgagaaaccgtcagattcatgt
ttccttacagctcaagtaaatgcaaggcagaaaacgaagaatgcgaagct
taaagagttaaagaatagcattctgtgggtttttagaagagcttggagta
ttatcacttattgaatagttagaagtgcccatacagctaagctctaaata
gttaatacattttttttttcccagacagtggcttctaaaagactctgtta
acaaacacaaggacataccaggtcaatgtcagcttttttgtaggtcaagg
cttcaactttggaatccagttcagtttgtatttgatctcttcttttcata
acacccttcatatcaaaacaaaaggagaaatcaagttggggtttgctgta
attatcattgcccataacacctgtttatattttagaatataaataatcat
caggaatatatttctgatgtaatcagtcatttggaattataaatatttgt
atagagtaggtttctttactctttaaaatctctaccgtaatcaagcattt
aaaatcatgtttataaatcttgtattaggcttccctgggcacattttatc
agttcaagcattacatgcatgcttaatatttgatggcaaagtcttcaaag
agagcatagagcagaacaaataagcaataaagtcattgagagcaatagaa
acatatgtcccatcatccactggtgcacctgagaggtcacctgagtcact
aacctgaaaatatctataattagtggagcatcttctttgactcaaaaagg
acagttaatcaaaccagtatttacacacaaagtcagagagctgggacata
agttttattaccttaagaatttcaccatggtggccacacaccttttggag
tggttgccacacgtcttttaatccagcactttgggagaacagagacag
gaattcatctgtacactgacatctgggaagatattgtccaacaggacata
ctcatgtggagagtcttagcaaatgagcctgttttcttctgctttgctga
gcaccaaaggatatcctctatgtgtggaaaaacccacagtgatcagccat
tagggactgccacttttgcatgtggcagacgaggtggcagggtggtgggc
aggcactggctagcaagttagctgagttgaagacaattcagtgaaagttt
ctaggttatcaggaggagtaaattgtcctctgaaagcaggatgcgctctc
cagtaaggcagaggtcaggggttcctggaagaaacacatgagaaggaaat
gtttatgcagaatttgcccatttggctcctttccttttgctatattcgct
tccttttcattttaattcctcccttcttcctcctctgggactcttctgct
cttttccctttccttaaaataagatctgaatttgagttgatgggattttc
agaatacaaaatatggtgagttggattaattagaatatttcacagaaagc
tccctgcttttcagttagcctcctgacgaaaataaatgcaaattctttca
ggactcataaactccagtcatattttctggatgccattctataggtgcta
gacaaggaaagtggcttaacaaagaggggaagaagtgaaaaataaataaa
taagcagaagatttgccgaaaattgtgttctcagttcttacaatgtattc
actctgaatttttacttggtctggctgcacatagcattaatacaatgatt
tttcccaaagatatatgcctatgttttatacatttttaacagtaaagtaa
attagcttgtcttttttatatttgtattttctacttatgttttcaatcta
aaacaaaatccataggacatataactgccttttatgaacgtaaaactgaa
gattctgacggtctccagtcttattttattatttatttatttatcagtgg
aaactactcccacagaaaccacagccacagctgtttcactttcctcccaa
gtcatgttccagctggaccccagtttaatgcgtatttctgtctttcagtg
aactgacagtttgatggatgtaacatggggaggccagaagtcacgaagct
tgacagatttctctcagcgcactgcttgatttttattttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117532077_117533167
seq2: B6Ng01-209E03.b_45_1142

seq1  GAATTCATTAAAATATCCAACTTCATGACTGAAATCTCTCATACATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAATATCCAACTTCATGACTGAAATCTCTCATACATTTAA  50

seq1  GGAAAGGATTAAACTTTAAAAAGGAGTTTATCTGCCAAGACATGTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATTAAACTTTAAAAAGGAGTTTATCTGCCAAGACATGTGCAGA  100

seq1  GTGTGAAGTTTTTAGCTGAGTATTGACCTGATGGGATGTTAAGTACTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGTTTTTAGCTGAGTATTGACCTGATGGGATGTTAAGTACTTTC  150

seq1  TACAAACACTTTAAACACTTTGTTCTTTTGAGAAACCGTCAGATTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACTTTAAACACTTTGTTCTTTTGAGAAACCGTCAGATTCATGT  200

seq1  TTCCTTACAGCTCAAGTAAATGCAAGGCAGAAAACGAAGAATGCGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACAGCTCAAGTAAATGCAAGGCAGAAAACGAAGAATGCGAAGCT  250

seq1  TAAAGAGTTAAAGAATAGCATTCTGTGGGTTTTTAGAAGAGCTTGGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTTAAAGAATAGCATTCTGTGGGTTTTTAGAAGAGCTTGGAGTA  300

seq1  TTATCACTTATTGAATAGTTAGAAGTGCCCATACAGCTAAGCTCTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTTATTGAATAGTTAGAAGTGCCCATACAGCTAAGCTCTAAATA  350

seq1  GTTAATACATTTTTTTTTTCCCAGACAGTGGCTTCTAAAAGACTCTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACATTTTTTTTTTCCCAGACAGTGGCTTCTAAAAGACTCTGTTA  400

seq1  ACAAACACAAGGACATACCAGGTCAATGTCAGCTTTTTTGTAGGTCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAAGGACATACCAGGTCAATGTCAGCTTTTTTGTAGGTCAAGG  450

seq1  CTTCAACTTTGGAATCCAGTTCAGTTTGTATTTGATCTCTTCTTTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTTTGGAATCCAGTTCAGTTTGTATTTGATCTCTTCTTTTCATA  500

seq1  ACACCCTTCATATCAAAACAAAAGGAGAAATCAAGTTGGGGTTTGCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTCATATCAAAACAAAAGGAGAAATCAAGTTGGGGTTTGCTGTA  550

seq1  ATTATCATTGCCCATAACACCTGTTTATATTTTAGAATATAAATAATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTGCCCATAACACCTGTTTATATTTTAGAATATAAATAATCAT  600

seq1  CAGGAATATATTTCTGATGTAATCAGTCATTTGGAATTATAAATATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATATATTTCTGATGTAATCAGTCATTTGGAATTATAAATATTTGT  650

seq1  ATAGAGTAGGTTTCTTTACTCTTTAAAATCTCTACCGTAATCAAGCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTAGGTTTCTTTACTCTTTAAAATCTCTACCGTAATCAAGCATTT  700

seq1  AAAATCATGTTTATAAATCTTGTATTAGGCTTCCCTGGGCACATTTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGTTTATAAATCTTGTATTAGGCTTCCCTGGGCACATTTTATC  750

seq1  AGTTCAAGCATTACATGCATGCTTAATATTTGATGGCAAAGTCTTCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGCATTACATGCATGCTTAATATTTGATGGCAAAGTCTTCAAAG  800

seq1  AGAGCATAGAGCAGAACAAATAAGCAATAAAGTCATTGAGAGCAATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAGAGCAGAACAAATAAGCAATAAAGTCATTGAGAGCAATAGAA  850

seq1  ACATATGTCCCATCATCCACTGGTGCACCTGAGAGGTCACCTGAGTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTCCCATCATCCACTGGTGCACCTGAGAGGTCACCTGAGTCACT  900

seq1  AACCTGAAAATATCTATAATTAGTGGAGCATCTTCTTTGACTCAAAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAAATATCTATAATTAGTGGAGCATCTTCTTTGACTCAAAAAGG  950

seq1  ACAGTTAATCAAACCAGTAATTACAACACAAAGTCAGAGAGCTGGGACAT  1000
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  ACAGTTAATCAAACCAGTATTTAC-ACACAAAGTCAGAGAGCTGGGACAT  999

seq1  AAGTTT--ATACCTTAAGAATTTCACCATGGTGG-CACACACCTTT--GA  1045
      ||||||   ||||||||||||||||||||||||| |||||||||||  ||
seq2  AAGTTTTATTACCTTAAGAATTTCACCATGGTGGCCACACACCTTTTGGA  1049

seq1  GTGG-TGGCACACGTCTTTAATCCCAGCAC-TTGGGAG-ACAGAGACAG  1091
      |||| || ||||||||||| |  ||||||| ||||||| ||||||||||
seq2  GTGGTTGCCACACGTCTTTTAATCCAGCACTTTGGGAGAACAGAGACAG  1098

seq1: chr3_117694469_117695652
seq2: B6Ng01-209E03.g_66_1256 (reverse)

seq1  TGAAATTAAAAATC-AGCAGTGCGCTTGGAGAAATCTGTC-AGCCTCGTT  48
      ||||| |||||||| |||||||||||  |||||||||||| ||| ||| |
seq2  TGAAAATAAAAATCAAGCAGTGCGCTGAGAGAAATCTGTCAAGCTTCG-T  49

seq1  GACCTCTGG-CTCCCATTGTTCACTCCATCAACCTGTCAG-TCACTGAAA  96
      ||| ||||| |||||  ||||   |||||||| ||||||| |||||| ||
seq2  GACTTCTGGCCTCCCCATGTTACATCCATCAAACTGTCAGTTCACTG-AA  98

seq1  AGACAG-AATACGCATTTAACTGGGGTCCAGCTGG-ACATGACTTTGGGA  144
      |||||| |||||||||| ||||||||||||||||| ||||||| ||||||
seq2  AGACAGAAATACGCATTAAACTGGGGTCCAGCTGGAACATGAC-TTGGGA  147

seq1  GGAAGGTG-AACAGCTGTGGCCTGTGGTTTCTTGTTGGAGTTGTTTCCCA  193
      |||| ||| ||||||||||| |||||||||| ||| ||||| |||| |||
seq2  GGAAAGTGAAACAGCTGTGG-CTGTGGTTTC-TGTGGGAGTAGTTT-CCA  194

seq1  CTGATAAATAAATAAATAAT-AAATAAGACTGGAGACCGTCAGAATCCTC  242
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  CTGATAAATAAATAAATAATAAAATAAGACTGGAGACCGTCAGAATCTTC  244

seq1  AG-TTTACGTTCATAAAAGGCAGTTATATGTCCTATGGATTTTGTTTTAG  291
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACGTTCATAAAAGGCAGTTATATGTCCTATGGATTTTGTTTTAG  294

seq1  ATTG-AAACATAAGTAGAAAATAC-AATAT-AAAAAGACAAGCTAATTTA  338
      |||| ||||||||||||||||||| ||||| |||||||||||||||||||
seq2  ATTGAAAACATAAGTAGAAAATACAAATATAAAAAAGACAAGCTAATTTA  344

seq1  CTTTACTGTTAAAAATGTAT-AAACATAGGCATATATCTTTGGGAAAAAT  387
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTACTGTTAAAAATGTATAAAACATAGGCATATATCTTTGGGAAAAAT  394

seq1  CATTGTATTAATGCTATGTGCAGCCAGACCAAGTAAAAATTCAGAGTGAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATTAATGCTATGTGCAGCCAGACCAAGTAAAAATTCAGAGTGAA  444

seq1  TACATTGTAAGAACTGAGAACACAATTTTCGGCAAATCTTCTGCTTATTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTAAGAACTGAGAACACAATTTTCGGCAAATCTTCTGCTTATTT  494

seq1  ATTTATTTTTCACTTCTTCCCCTCTTTGTTAAGCCACTTTCCTTGTCTAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTCACTTCTTCCCCTCTTTGTTAAGCCACTTTCCTTGTCTAG  544

seq1  CACCTATAGAATGGCATCCAGAAAATATGACTGGAGTTTATGAGTCCTGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATAGAATGGCATCCAGAAAATATGACTGGAGTTTATGAGTCCTGA  594

seq1  AAGAATTTGCATTTATTTTCGTCAGGAGGCTAACTGAAAAGCAGGGAGCT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTGCATTTATTTTCGTCAGGAGGCTAACTGAAAAGCAGGGAGCT  644

seq1  TTCTGTGAAATATTCTAATTAATCCAACTCACCATATTTTGTATTCTGAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAAATATTCTAATTAATCCAACTCACCATATTTTGTATTCTGAA  694

seq1  AATCCCATCAACTCAAATTCAGATCTTATTTTAAGGAAAGGGAAAAGAGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATCAACTCAAATTCAGATCTTATTTTAAGGAAAGGGAAAAGAGC  744

seq1  AGAAGAGTCCCAGAGGAGGAAGAAGGGAGGAATTAAAATGAAAAGGAAGC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTCCCAGAGGAGGAAGAAGGGAGGAATTAAAATGAAAAGGAAGC  794

seq1  GAATATAGCAAAAGGAAAGGAGCCAAATGGGCAAATTCTGCATAAACATT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGCAAAAGGAAAGGAGCCAAATGGGCAAATTCTGCATAAACATT  844

seq1  TCCTTCTCATGTGTTTCTTCCAGGAACCCCTGACCTCTGCCTTACTGGAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCATGTGTTTCTTCCAGGAACCCCTGACCTCTGCCTTACTGGAG  894

seq1  AGCGCATCCTGCTTTCAGAGGACAATTTACTCCTCCTGATAACCTAGAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCATCCTGCTTTCAGAGGACAATTTACTCCTCCTGATAACCTAGAAA  944

seq1  CTTTCACTGAATTGTCTTCAACTCAGCTAACTTGCTAGCCAGTGCCTGCC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTGAATTGTCTTCAACTCAGCTAACTTGCTAGCCAGTGCCTGCC  994

seq1  CACCACCCTGCCACCTCGTCTGCCACATGCAAAAGTGGCAGTCCCTAATG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCTGCCACCTCGTCTGCCACATGCAAAAGTGGCAGTCCCTAATG  1044

seq1  GCTGATCACTGTGGGTTTTTCCACACATAGAGGATATCCTTTGGTGCTCA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCACTGTGGGTTTTTCCACACATAGAGGATATCCTTTGGTGCTCA  1094

seq1  GCAAAGCAGAAGAAAACAGGCTCATTTGCTAAGACTCTCCACATGAGTAT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAGAAGAAAACAGGCTCATTTGCTAAGACTCTCCACATGAGTAT  1144

seq1  GTCCTGTTGGACAATATCTTCCCAGATGTCAGTGTACAGATGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTTGGACAATATCTTCCCAGATGTCAGTGTACAGATGAATTC  1191