BAC Information

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BAC

Clone NameB6Ng01-209I09
Chromosome3 (Build37)
Map Location 144,231,172 - 144,232,296
singlet/doubletsinglet
Overlap geneHs2st1
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572
Downstream geneSep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209I09.bB6Ng01-209I09.g
ACCGA028118GA028119
length1,1331,130
definitionB6Ng01-209I09.b B6Ng01-209I09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaagccaattgaagaaatagtaaatacaagtgctcattttaa
caacttttaatttattgtaagctgagtcactttctttcctgtaaaactgg
atcatgaatgaggccagactctgactgtaaatgttgtacagatgagccac
gtgaaaggcaaaaggagatactgttcaaccttcaatatttaaactgaata
acttttagcacataaaacctttctaaatccagtacatacattcagtagtt
cttcaaatttcactctagaaaggaggactggactgcaagtacctttggct
tctctttcacacggagctggacatcaatcaaacgattcttgcttttataa
cactattctttaaaatgtgttcaaggcttccttaaaatctaccaaaaact
tggaaatatctactatatataaaatttaaattcttttctggtacttcttt
tcttgaaaattaatccgcacccccaagctgcatctagctgttcctcaagg
taactttaaatcgtgtttaagaaacaggcaaggtcaaagtgtatgcaaaa
gctgtttcccatattcaaattacattctctgagctgattttcaagtgtca
catacatttttaaatcaaaacgcgtcaatgattaagtccctgtctccaga
gcacttccaaataccaaagttctccactatccggaagcacccgactatcc
gcgcttttcgactgctgttgcacaagttcgcactccaatttttgtgtttc
aagcaccctttttccattcgggcactgagagagacgctttaagagaccca
tatggttcactctccccactcttttcctttcacaaggtaaaccctgcaat
ttccaaaccctcaacgttcccctcttgtacatgcaatcagcctaaactta
cgaccccactctgaagcccaaatcaacaagtttagcgtcactcataaaga
acttcagtcccccagatgtcttcttttcgtgccatcatcggcttccgctg
ttcccacaccgcagcctacccaagctgtcagttctaagggtcccttactg
cctatgctcaaggcatgccttgccactcactacggtgagcggctttcact
ccccattcattcccggagtcttcttccatttct
gaattccagttttatgttcaattccaaatttcttacaaaactgtataaag
ttgtttccagtataagcagggccattatctgttttgatgattttaggcaa
tctcataacagtaaaagcctgtaagcaatatcaattacatttccagaagc
ttctcctgtatgtagaagcgaaaatgagtcctgaacaagtgttaatacag
acatgtatatatttcaattttccaaattctgagttacatctatttgccaa
atatgattgggcacaaggcttcatggattaacccctaaatgaggagcttg
agacaatgtaagacagtcaagacattgctttaaaatcattctagcttgct
ccttaacactcttatgtaggagccttaaggtatgactagaaaaatgaact
ttatagtgaccacatttagccaaaacaataggatctgaaaccaaagattt
tcctatcaaatctctgtcaatacaatcattgcctgcagctaaaggtcggg
gaagatcagaatgagctcttatatgaccaatataaataggattttttttt
tttttagcaagaatggtgtttgtgccacagcacctccagtaggatctgtg
tgacaagttccacagactgaggcaattgacctcaaaagaccgtgtaggtg
tatgagtcatattaaatatcaacaaatgtaaaggcaaagaataatctata
taaataacaaatttgtttttcagtagctctttctacttgaagtaaggcca
acaaccctttctggaaattaaaactcgaggagaggtaggatcagtactcc
ccctaagaatatcaaaataagggtttcaattctcctgtagtgagctttaa
atacggacaaagcaaagtaatatcagcttacagcttttgaaaattattta
aagcttttgtttgttgtttgtttgttggttccctttcccaacacccaaaa
ttataagaagatttatttaaagcctgaaacccttaatggaggtttaatta
tcacatttttctatttttatttattgatattaggatattttcctttaatc
acattccaatgttatcccctttcctagttttacccctgaatccccttatc
ccttccccccccttccctgctcccagccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144231172_144232296
seq2: B6Ng01-209I09.b_42_1174

seq1  GAATTCCAAAAGCCAATTGAAGAAATAGTAAATACAAGTGCTCATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGCCAATTGAAGAAATAGTAAATACAAGTGCTCATTTTAA  50

seq1  CAACTTTTAATTTATTGTAAGCTGAGTCACTTTCTTTCCTGTAAAACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTAATTTATTGTAAGCTGAGTCACTTTCTTTCCTGTAAAACTGG  100

seq1  ATCATGAATGAGGCCAGACTCTGACTGTAAATGTTGTACAGATGAGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAATGAGGCCAGACTCTGACTGTAAATGTTGTACAGATGAGCCAC  150

seq1  GTGAAAGGCAAAAGGAGATACTGTTCAACCTTCAATATTTAAACTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCAAAAGGAGATACTGTTCAACCTTCAATATTTAAACTGAATA  200

seq1  ACTTTTAGCACATAAAACCTTTCTAAATCCAGTACATACATTCAGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGCACATAAAACCTTTCTAAATCCAGTACATACATTCAGTAGTT  250

seq1  CTTCAAATTTCACTCTAGAAAGGAGGACTGGACTGCAAGTACCTTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTTCACTCTAGAAAGGAGGACTGGACTGCAAGTACCTTTGGCT  300

seq1  TCTCTTTCACACGGAGCTGGACATCAATCAAACGATTCTTGCTTTTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCACACGGAGCTGGACATCAATCAAACGATTCTTGCTTTTATAA  350

seq1  CACTATTCTTTAAAATGTGTTCAAGGCTTCCTTAAAATCTACCAAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTCTTTAAAATGTGTTCAAGGCTTCCTTAAAATCTACCAAAAACT  400

seq1  TGGAAATATCTACTATATATAAAATTTAAATTCTTTTCTGGTACTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATATCTACTATATATAAAATTTAAATTCTTTTCTGGTACTTCTTT  450

seq1  TCTTGAAAATTAATCCGCACCCCCAAGCTGCATCTAGCTGTTCCTCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAATTAATCCGCACCCCCAAGCTGCATCTAGCTGTTCCTCAAGG  500

seq1  TAACTTTAAATCGTGTTTAAGAAACAGGCAAGGTCAAAGTGTATGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAATCGTGTTTAAGAAACAGGCAAGGTCAAAGTGTATGCAAAA  550

seq1  GCTGTTTCCCATATTCAAATTACATTCTCTGAGCTGATTTTCAAGTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTCCCATATTCAAATTACATTCTCTGAGCTGATTTTCAAGTGTCA  600

seq1  CATACATTTTTAAATCAAAACGCGTCAATGATTAAGTCCCTGTCTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTTTAAATCAAAACGCGTCAATGATTAAGTCCCTGTCTCCAGA  650

seq1  GCACTTCCAAATACCAAAGTTCTCCACTATCCGGAAGCACCCGACTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCAAATACCAAAGTTCTCCACTATCCGGAAGCACCCGACTATCC  700

seq1  GCGC-TTTCGACTGCTGTTGCACAAGTTCGCACTCCAA-TTTTGTGTTTC  748
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCGCTTTTCGACTGCTGTTGCACAAGTTCGCACTCCAATTTTTGTGTTTC  750

seq1  AAGCACCC-TTTTCCATTCGGGCACTGAGAGAGACGCTTTAAGAGACCCA  797
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCTTTTTCCATTCGGGCACTGAGAGAGACGCTTTAAGAGACCCA  800

seq1  TATGGTTCACTCTCCCCACTCTTTTCCTTTCACAAGGTAAACCCTGCAA-  846
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGGTTCACTCTCCCCACTCTTTTCCTTTCACAAGGTAAACCCTGCAAT  850

seq1  TTCCAAACCCTCAACGTTCCCCTCTTGTACATGCAATCAGCCTAAACTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACCCTCAACGTTCCCCTCTTGTACATGCAATCAGCCTAAACTTA  900

seq1  CGACCCCACTCTGAAGCCCAAATCAACCAGTTTAGCGTCACTCATAAAGA  946
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGACCCCACTCTGAAGCCCAAATCAACAAGTTTAGCGTCACTCATAAAGA  950

seq1  ACTTCAGTCCCCCAGATGTCTCCTTTTCGTGCCATCATCGGC-TCCGCTG  995
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  ACTTCAGTCCCCCAGATGTCTTCTTTTCGTGCCATCATCGGCTTCCGCTG  1000

seq1  -TCCCACACCGCCAGCCTACCAAAGCTGTCAGTTCTAA-GGTCCCTTACT  1043
       |||||||||| ||||||||| |||||||||||||||| |||||||||||
seq2  TTCCCACACCG-CAGCCTACCCAAGCTGTCAGTTCTAAGGGTCCCTTACT  1049

seq1  GCCCTAGGCTC-AGGCATGCC-TGCCACTCACTACGGTGAGCCGCTTTCA  1091
      | |||| |||| ||||||||| |||||||||||||||||||| |||||||
seq2  G-CCTATGCTCAAGGCATGCCTTGCCACTCACTACGGTGAGCGGCTTTCA  1098

seq1  CTCCCCA-TCATTCCCGGAGTCTCCTTCCATTTCT  1125
      ||||||| ||||||||||||||| |||||||||||
seq2  CTCCCCATTCATTCCCGGAGTCTTCTTCCATTTCT  1133