BAC Information

Click to search

BAC

Clone NameB6Ng01-209K14
Chromosome3 (Build37)
Map Location 145,127,434 - 145,277,985
singlet/doubletdoublet
Overlap geneCol24a1, 2410019A14Rik
Upstream geneHs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream geneCyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209K14.bB6Ng01-209K14.g
ACCGA028221GA028222
length1,138654
definitionB6Ng01-209K14.b B6Ng01-209K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,127,434 - 145,128,572)(145,277,332 - 145,277,985)
sequence
gaattccattctaaaatgttcagttgcccaaatgcatatctccgctagga
aagaacatctgtctaacttatggtccgtcatccacatctgaagaacctac
cacaatggcatctcatctctaaacacatgtggagaactccaaagtagggc
atattaaaatgagattattttgttttattcctttagtgaaaaactccagt
cagactcacagaaatatgcttttctggtctgcttaaggcagagtgagagt
ttccttgagaaccctggggatattttgattagaattttagggttggtgac
attaagtgacatttgaggataaaagaaatacctaagtcttatcacctggg
aatattctgtgactgtcttgctaaggttttcttccatcgtgagcatcatc
aatacagagatcctattctgccactgttttcaaacctctggtcccccact
gaagaactgcatcactgagcaagccagtctctggtcttatgcttcatata
tccactgcatagagtgacaaaccgaggctcctgcagatgtccccaacatg
gctgttgacttaacatggctctgttcctgatattcctactcccatcagag
agcacatgtctgtttaacctgaagcttctgtatagattttcttcggaaga
gaaggctctgtggcatttaaacagcattcactggggctgtgggctgactt
acctgtgaggaccaaaactgctcttgcagaagactgaagttcaattccca
tgtcagacagcttacatgacctgtaactccagctccaggggatctgacgc
ccttcagcagacttctgaactcacatgtatgaacctacatagagacacaa
agaaacattcactcttatttagcattttaaatttttttattcagcccttt
cagagcatgattctataaaatacacgtgtccagacagcttctggtacttt
ctatgattctataactctgctagaattggacatgcagagtgcaaactaag
aatagttgaagcccatagtcacactgtagtccatagatgagaggaaacaa
catgtgtagtaaatttatcacacaaaaaattgtgaagttaaaaatatatg
gagtagtgttcatggatgcaaatacagattaaatgcag
gaattcctctctgagcctctagacttccttggctggctggcgactccttc
ctcctgggacagcttttgccagagctgagcagcctggcccccagctgcgc
aggccctctccggtaagaggaaatgctttcagcttagtccattaacacaa
acattcaaaagcaaacactctaaagccacaggtcgtgttcgcataaataa
aacggatcgagaaaagcttcaccccaagaaaccaaaggggtattaaaaaa
aaataaaaaaataaaaaacctacccttgctttccaaggaggcaggcaaca
aagccgcagcaattccattggtttgtgtgctcagtggagctgggtggctg
aagccacaggcctttgaagaggaaatgccatccaaggtacaggcagccag
ccagcccctgagtcctgaaagtaacaggacagggaaggggaagggggcat
cgttaggaagtggaatgtggaagggacaagacagataaatgagactcatc
tagggacctcaccccatgaccaaaggacagggtaactcactgtgcccctg
agaccgagctggggcctggcaaattctaggtggcgggcacagcccagtga
ctaaggcttcgaggaggggtgtacgacctcgctgaggggtggagaggggt
ggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145127434_145128572
seq2: B6Ng01-209K14.b_42_1179

seq1  GAATTCCATTCTAAAATGTTCAGTTGCCCAAATGCATATCTCCGCTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTAAAATGTTCAGTTGCCCAAATGCATATCTCCGCTAGGA  50

seq1  AAGAACATCTGTCTAACTTATGGTCCGTCATCCACATCTGAAGAACCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATCTGTCTAACTTATGGTCCGTCATCCACATCTGAAGAACCTAC  100

seq1  CACAATGGCATCTCATCTCTAAACACATGTGGAGAACTCCAAAGTAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGCATCTCATCTCTAAACACATGTGGAGAACTCCAAAGTAGGGC  150

seq1  ATATTAAAATGAGATTATTTTGTTTTATTCCTTTAGTGAAAAACTCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAATGAGATTATTTTGTTTTATTCCTTTAGTGAAAAACTCCAGT  200

seq1  CAGACTCACAGAAATATGCTTTTCTGGTCTGCTTAAGGCAGAGTGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCACAGAAATATGCTTTTCTGGTCTGCTTAAGGCAGAGTGAGAGT  250

seq1  TTCCTTGAGAACCCTGGGGATATTTTGATTAGAATTTTAGGGTTGGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGAGAACCCTGGGGATATTTTGATTAGAATTTTAGGGTTGGTGAC  300

seq1  ATTAAGTGACATTTGAGGATAAAAGAAATACCTAAGTCTTATCACCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGACATTTGAGGATAAAAGAAATACCTAAGTCTTATCACCTGGG  350

seq1  AATATTCTGTGACTGTCTTGCTAAGGTTTTCTTCCATCGTGAGCATCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTGTGACTGTCTTGCTAAGGTTTTCTTCCATCGTGAGCATCATC  400

seq1  AATACAGAGATCCTATTCTGCCACTGTTTTCAAACCTCTGGTCCCCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAGATCCTATTCTGCCACTGTTTTCAAACCTCTGGTCCCCCACT  450

seq1  GAAGAACTGCATCACTGAGCAAGCCAGTCTCTGGTCTTATGCTTCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTGCATCACTGAGCAAGCCAGTCTCTGGTCTTATGCTTCATATA  500

seq1  TCCACTGCATAGAGTGACAAACCGAGGCTCCTGCAGATGTCCCCAACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGCATAGAGTGACAAACCGAGGCTCCTGCAGATGTCCCCAACATG  550

seq1  GCTGTTGACTTAACATGGCTCTGTTCCTGATATTCCTACTCCCATCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGACTTAACATGGCTCTGTTCCTGATATTCCTACTCCCATCAGAG  600

seq1  AGCACATGTCTGTTTAACCTGAAGCTTCTGTATAGATTTTCTTCGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTCTGTTTAACCTGAAGCTTCTGTATAGATTTTCTTCGGAAGA  650

seq1  GAAGGCTCTGTGGCATTTAAACAGCATTCACTGGGGCTGTGGGCTGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCTGTGGCATTTAAACAGCATTCACTGGGGCTGTGGGCTGACTT  700

seq1  ACCTGTGAGGACCAAAACTGCTCTTGCAGAAGACTGAAGTTCAATTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAGGACCAAAACTGCTCTTGCAGAAGACTGAAGTTCAATTCCCA  750

seq1  TGTCAGACAGCTTACATGACCTGTAACTCCAGCTCCAGGGGATCTGACGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACAGCTTACATGACCTGTAACTCCAGCTCCAGGGGATCTGACGC  800

seq1  CCTTCAGCAGACTTCTGAACTCACATGTATGAACCTACATAGAGACACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCAGACTTCTGAACTCACATGTATGAACCTACATAGAGACACAA  850

seq1  AGAAACATTCACTCTTATTTAGCATTTTAAATTTTTTTATTCAGCCC-TT  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAAACATTCACTCTTATTTAGCATTTTAAATTTTTTTATTCAGCCCTTT  900

seq1  CAGAGCATGATTCTATAAAATACACGTGTCCAGACAGCTTCTGGTACTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATGATTCTATAAAATACACGTGTCCAGACAGCTTCTGGTACTTT  950

seq1  CTATGATTCTATAACTCTGCTAAGAATTGGACATGCAGAGTGGAAACTAA  999
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  CTATGATTCTATAACTCTGCT-AGAATTGGACATGCAGAGTGCAAACTAA  999

seq1  GAATAG-TGAAGCCCATAGTCACACTGTAGTCAATAGATGAGAGGAAACA  1048
      |||||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATAGTTGAAGCCCATAGTCACACTGTAGTCCATAGATGAGAGGAAACA  1049

seq1  CAATGGTGTAAGTAAATTAATCACACAAAAAA-TGTGAAGTTTAAAAATA  1097
        || |||| |||||||| ||||||||||||| ||||||| |||||||||
seq2  ACAT-GTGT-AGTAAATTTATCACACAAAAAATTGTGAAG-TTAAAAATA  1096

seq1  TAATGAGTAGTG-TCATGAATGAAAATAACAGATTAAATGCAG  1139
      ||  |||||||| ||||| ||| |||| |||||||||||||||
seq2  TATGGAGTAGTGTTCATGGATGCAAAT-ACAGATTAAATGCAG  1138

seq1: chr3_145277332_145277985
seq2: B6Ng01-209K14.g_66_719 (reverse)

seq1  CACCACCCCTCTCCACCCCTCAGCGAGGTCGTACACCCCTCCTCGAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCCTCTCCACCCCTCAGCGAGGTCGTACACCCCTCCTCGAAGCC  50

seq1  TTAGTCACTGGGCTGTGCCCGCCACCTAGAATTTGCCAGGCCCCAGCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTGGGCTGTGCCCGCCACCTAGAATTTGCCAGGCCCCAGCTCG  100

seq1  GTCTCAGGGGCACAGTGAGTTACCCTGTCCTTTGGTCATGGGGTGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGGGCACAGTGAGTTACCCTGTCCTTTGGTCATGGGGTGAGGTC  150

seq1  CCTAGATGAGTCTCATTTATCTGTCTTGTCCCTTCCACATTCCACTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGAGTCTCATTTATCTGTCTTGTCCCTTCCACATTCCACTTCCT  200

seq1  AACGATGCCCCCTTCCCCTTCCCTGTCCTGTTACTTTCAGGACTCAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGCCCCCTTCCCCTTCCCTGTCCTGTTACTTTCAGGACTCAGGGG  250

seq1  CTGGCTGGCTGCCTGTACCTTGGATGGCATTTCCTCTTCAAAGGCCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGCTGCCTGTACCTTGGATGGCATTTCCTCTTCAAAGGCCTGTG  300

seq1  GCTTCAGCCACCCAGCTCCACTGAGCACACAAACCAATGGAATTGCTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCCACCCAGCTCCACTGAGCACACAAACCAATGGAATTGCTGCG  350

seq1  GCTTTGTTGCCTGCCTCCTTGGAAAGCAAGGGTAGGTTTTTTATTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTGCCTGCCTCCTTGGAAAGCAAGGGTAGGTTTTTTATTTTTTT  400

seq1  ATTTTTTTTTAATACCCCTTTGGTTTCTTGGGGTGAAGCTTTTCTCGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTAATACCCCTTTGGTTTCTTGGGGTGAAGCTTTTCTCGATC  450

seq1  CGTTTTATTTATGCGAACACGACCTGTGGCTTTAGAGTGTTTGCTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTATTTATGCGAACACGACCTGTGGCTTTAGAGTGTTTGCTTTTGA  500

seq1  ATGTTTGTGTTAATGGACTAAGCTGAAAGCATTTCCTCTTACCGGAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTTAATGGACTAAGCTGAAAGCATTTCCTCTTACCGGAGAGG  550

seq1  GCCTGCGCAGCTGGGGGCCAGGCTGCTCAGCTCTGGCAAAAGCTGTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGCAGCTGGGGGCCAGGCTGCTCAGCTCTGGCAAAAGCTGTCCCA  600

seq1  GGAGGAAGGAGTCGCCAGCCAGCCAAGGAAGTCTAGAGGCTCAGAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGAGTCGCCAGCCAGCCAAGGAAGTCTAGAGGCTCAGAGAGGA  650

seq1  ATTC  654
      ||||
seq2  ATTC  654