BAC Information

Click to search

BAC

Clone NameB6Ng01-209K15
Chromosome3 (Build37)
Map Location 121,060,951 - 121,167,764
singlet/doubletdoublet
Overlap geneAlg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209K15.bB6Ng01-209K15.g
ACCGA028223GA028224
length1,187788
definitionB6Ng01-209K15.b B6Ng01-209K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,166,562 - 121,167,764)(121,060,951 - 121,061,730)
sequence
gaattcagttcccaacaccacataaacccccgtgtggctccccaggccca
aaaactcagcctttgagagggagatgcaaaattgaggccagttcgcatta
tgtgagcccttgtctcaaacaaactaaaacaaacaaaaaaccaaatctgc
cattctaaacacacacacacacacacacacacacacacacacacacacac
acgcgcgcgcgcatgcacgctttgactcagaaatctcactttttggaaat
ctaatcttcaaggatctaggatcacaaaattaagacattcagtatgtatt
aatatcagaatattttaaatagccagtaggtgcatttcacttcttgagtt
cttggctaaattcaaagtgtaccttcctgcacatatgcaaagcacatgcc
ccataaaactgagttactagaaattaaaatgttagaagccatgtaacaac
accaaatgctttcttaggggcaaaagccaaatatgtaatttaaactgtgt
gagttgttttttttttttttttttttttcattcctattccgtttttttct
gtctcttccttttccacaccatcctgctgttccctctagcccctgcccca
tttccttagagcactttcagcatacctcttccccagggtcctcagggcag
agttgggtttgttatatatctccctggctctgccctgctctggggagccc
acttctgccagtacagttgttgtgaggatccaccagccctggtggaatga
tttttatcttgtttttgcccggaccccagatatttcaactatcttgggca
cacgttaggttattttttaagtgctttcccaagtgtctggttgatttcaa
ttatgaatcctattttgtacagggaatgcagctctctagaaacaaccaat
actatctctcaggccaggggatcctgaagaagcccttcactactccatac
cagctacagccttgggtttgctcacaagtccctagggtctgctctctttt
gttacccaaacactttccctgcctccgactcctatgtgtataacaaaata
acttaatatcgactcatttttccatggtggtgtgctgggacattcagcct
tgcagaattgacatgaaggttcttcaatttcgaatgatgcaaatattgac
tatggaatagaatagtcatgcagctgtttgttttggg
gaattcaatggtatctttaacagactttttgctttgtttcggctttagtt
tttgtttgttgttttctttttttctttctttctttctttctttctttttt
ttttttttttttgcctgttttgatttttattggggagtttttgttgttgt
ttctcgcttttgtctttgtgttttaggaagagagaaagactaaagttgaa
tgggtagagatggagagtgtctgggaggacttgggggaagggacaaacag
gatcagaatatattgtgtgaaagaaaaagaaaaacctgtggtgacaacca
tgatgttagtcagccacatacatgtaaatgtatggttaggtatgtgcagt
ctatgcacaagttacaagtggacagtcctccagagggaatcagagaagag
ttgctctctttccttacacccttgctcccacttcctcttttccttgttca
cagctttactctgttgcagactgtagactgcttttgaagtaagccaagag
tcagcggccagggcagtgatagtcagtgatgggcggatactgggaggcca
gggcagtgaggggcagtgatgggagggcactgggaggccagggcagtgaa
gggcagtgatgggagggcactgagaggccaggacagtgatgggcaggaat
gggtgagcactgagaatttgcatcatccgaccattacatttcaagttctt
taacacaaaagcttcttgggtgaccttttcttcccccccccccccccccc
cgtgattggaagtaaacctctctgggtattgcttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121166562_121167764
seq2: B6Ng01-209K15.b_49_1235 (reverse)

seq1  CCCAAAACAAACAAGCTG---GACTATGATCTATTTCTTATCATAGTCAA  47
      |||||||||||| |||||   ||||||  ||||||      |||||||| 
seq2  CCCAAAACAAAC-AGCTGCATGACTAT--TCTATT-----CCATAGTCA-  41

seq1  ATATATTTCCATACCATTCGGAAAATGGGAAAGGACC-TCATGTCAATCC  96
        |||||| |||  ||||||  |||| |  ||| ||| |||||||||| |
seq2  --ATATTTGCAT--CATTCG--AAATTG--AAGAACCTTCATGTCAATTC  83

seq1  TGC-AGGCTGAATGGCCCAGCACAC--ACATGGAAAAAATGAGTCGATA-  142
      ||| |||||||||| ||||||||||   ||||| ||||||||||||||| 
seq2  TGCAAGGCTGAATGTCCCAGCACACCACCATGG-AAAAATGAGTCGATAT  132

seq1  TAAGTTATTTTGTAATACACAATAGAGTCGGAGGGCAGGGAAAGGTGTTT  192
      ||||||||||||| |||||||   |||||||| |||||||||| ||||||
seq2  TAAGTTATTTTGTTATACACATAGGAGTCGGA-GGCAGGGAAA-GTGTTT  180

seq1  GGGTAACAAAAAGAGAGCAGACCCTAGGGACTTGTGAGCCAAACCCAAGG  242
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  GGGTAAC-AAAAGAGAGCAGACCCTAGGGACTTGTGAG-CAAACCCAAGG  228

seq1  CTGTAGCTGGTATGGAGTTAGTG-AGGGCTTCTTCAGGATCCCCTGGGCC  291
      ||||||||||||||||| ||||| ||||||||||||||||||||| ||||
seq2  CTGTAGCTGGTATGGAG-TAGTGAAGGGCTTCTTCAGGATCCCCT-GGCC  276

seq1  TGAGAGATAGTATTGGTTGTTTCTAGAGAGCTGCATTCCCTGTACAAAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATAGTATTGGTTGTTTCTAGAGAGCTGCATTCCCTGTACAAAAT  326

seq1  AGGATTCATAATTTGAAATCAACCAGACACTTGGGAAAGCACTTAAAAAA  391
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCATAA-TTGAAATCAACCAGACACTTGGGAAAGCACTTAAAAAA  375

seq1  TAACCTAACGTGTGCCCAAGATAGTTGAAATATCTGGGGTCCGGGCAAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAACGTGTGCCCAAGATAGTTGAAATATCTGGGGTCCGGGCAAAA  425

seq1  ACAAGATAAAAATCATTCCACCAGGGCTGGTGGATCCTCACAACAACTGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAAAAATCATTCCACCAGGGCTGGTGGATCCTCACAACAACTGT  475

seq1  ACTGGCAGAAGTGGGCTCCCCAGAGCAGGGCAGAGCCAGGGAGATATATA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGAAGTGGGCTCCCCAGAGCAGGGCAGAGCCAGGGAGATATATA  525

seq1  ACAAACCCAACTCTGCCCTGAGGACCCTGGGGAAGAGGTATGCTGAAAGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCAACTCTGCCCTGAGGACCCTGGGGAAGAGGTATGCTGAAAGT  575

seq1  GCTCTAAGGAAATGGGGCAGGGGCTAGAGGGAACAGCAGGATGGTGTGGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGGAAATGGGGCAGGGGCTAGAGGGAACAGCAGGATGGTGTGGA  625

seq1  AAAGGAAGAGACAGAAAAAAACGGAATAGGAATGAAAAAAAAAAAAAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAGACAGAAAAAAACGGAATAGGAATGAAAAAAAAAAAAAAAA  675

seq1  AAAAAACAACTCACACAGTTTAAATTACATATTTGGCTTTTGCCCCTAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAACTCACACAGTTTAAATTACATATTTGGCTTTTGCCCCTAAG  725

seq1  AAAGCATTTGGTGTTGTTACATGGCTTCTAACATTTTAATTTCTAGTAAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGGTGTTGTTACATGGCTTCTAACATTTTAATTTCTAGTAAC  775

seq1  TCAGTTTTATGGGGCATGTGCTTTGCATATGTGCAGGAAGGTACACTTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTATGGGGCATGTGCTTTGCATATGTGCAGGAAGGTACACTTTG  825

seq1  AATTTAGCCAAGAACTCAAGAAGTGAAATGCACCTACTGGCTATTTAAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCCAAGAACTCAAGAAGTGAAATGCACCTACTGGCTATTTAAAA  875

seq1  TATTCTGATATTAATACATACTGAATGTCTTAATTTTGTGATCCTAGATC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGATATTAATACATACTGAATGTCTTAATTTTGTGATCCTAGATC  925

seq1  CTTGAAGATTAGATTTCCAAAAAGTGAGATTTCTGAGTCAAAGCGTGCAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGATTAGATTTCCAAAAAGTGAGATTTCTGAGTCAAAGCGTGCAT  975

seq1  GCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1025

seq1  GTGTTTAGAATGGCAGATTTGGTTTTTTGTTTGTTTTAGTTTGTTTGAGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGAATGGCAGATTTGGTTTTTTGTTTGTTTTAGTTTGTTTGAGA  1075

seq1  CAAGGGCTCACATAATGCGAACTGGCCTCAATTTTGCATCTCCCTCTCAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCTCACATAATGCGAACTGGCCTCAATTTTGCATCTCCCTCTCAA  1125

seq1  AGGCTGAGTTTTTGGGCCTGGGGAGCCACACGGGGGTTTATGTGGTGTTG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGTTTTTGGGCCTGGGGAGCCACACGGGGGTTTATGTGGTGTTG  1175

seq1  GGAACTGAATTC  1203
      ||||||||||||
seq2  GGAACTGAATTC  1187

seq1: chr3_121060951_121061730
seq2: B6Ng01-209K15.g_64_851

seq1  GAATTCAATGGTATCTTTAACAGACTTTTTGCTTTGTTTCGGCTTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTATCTTTAACAGACTTTTTGCTTTGTTTCGGCTTTAGTT  50

seq1  TTTGTTTGTTGTTTTCTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTGTTTTCTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTTTT  100

seq1  TTTTTTTTTTTTGCCTGTTTTGATTTTTATTGGGGAGTTTTTGTTGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGCCTGTTTTGATTTTTATTGGGGAGTTTTTGTTGTTGT  150

seq1  TTCTCGCTTTTGTCTTTGTGTTTTAGGAAGAGAGAAAGACTAAAGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCTTTTGTCTTTGTGTTTTAGGAAGAGAGAAAGACTAAAGTTGAA  200

seq1  TGGGTAGAGATGGAGAGTGTCTGGGAGGACTTGGGGGAAGGGACAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGATGGAGAGTGTCTGGGAGGACTTGGGGGAAGGGACAAACAG  250

seq1  GATCAGAATATATTGTGTGAAAGAAAAAGAAAAACCTGTGGTGACAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAATATATTGTGTGAAAGAAAAAGAAAAACCTGTGGTGACAACCA  300

seq1  TGATGTTAGTCAGCCACATACATGTAAATGTATGGTTAGGTATGTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTAGTCAGCCACATACATGTAAATGTATGGTTAGGTATGTGCAGT  350

seq1  CTATGCACAAGTTACAAGTGGACAGTCCTCCAGAGGGAATCAGAGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACAAGTTACAAGTGGACAGTCCTCCAGAGGGAATCAGAGAAGAG  400

seq1  TTGCTCTCTTTCCTTACACCCTTGCTCCCACTTCCTCTTTTCCTTGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTTTCCTTACACCCTTGCTCCCACTTCCTCTTTTCCTTGTTCA  450

seq1  CAGCTTTACTCTGTTGCAGACTGTAGACTGCTTTTGAAGTAAGCCAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTACTCTGTTGCAGACTGTAGACTGCTTTTGAAGTAAGCCAAGAG  500

seq1  TCAGCGGCCAGGGCAGTGATAGTCAGTGATGGGCGGATACTGGGAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGGCCAGGGCAGTGATAGTCAGTGATGGGCGGATACTGGGAGGCCA  550

seq1  GGGCAGTGAGGGGCAGTGATGGGAGGGCACTGGGAGGCCAGGGCAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGAGGGGCAGTGATGGGAGGGCACTGGGAGGCCAGGGCAGTGAA  600

seq1  GGGCAGTGATGGGAGGGCACTGAGAGGCCAGGACAGTGATGGGCAGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGATGGGAGGGCACTGAGAGGCCAGGACAGTGATGGGCAGGAAT  650

seq1  GGGTGAGCACTGAGAATTTGCATCAT-CGACCATTACA-TTCAAGTTCTT  698
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  GGGTGAGCACTGAGAATTTGCATCATCCGACCATTACATTTCAAGTTCTT  700

seq1  TAACAC-AAAGCTTCTT-GGTGACCTTTTTCTT--CCCCCCCCCCCCCCC  744
      |||||| |||||||||| ||||||| |||||||  |||||||||||||||
seq2  TAACACAAAAGCTTCTTGGGTGACC-TTTTCTTCCCCCCCCCCCCCCCCC  749

seq1  CCGTGATTGG-AGTAAACCTCTCT-GGTA-TGCTTCTTA  780
      |||||||||| ||||||||||||| |||| |||||||||
seq2  CCGTGATTGGAAGTAAACCTCTCTGGGTATTGCTTCTTA  788