BAC Information

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BAC

Clone NameB6Ng01-209L02
Chromosome3 (Build37)
Map Location 72,729,663 - 72,865,423
singlet/doubletdoublet
Overlap gene2010204N08Rik, Slitrk3
Upstream geneLOC100041459
Downstream geneBche, LOC667425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209L02.bB6Ng01-209L02.g
ACCGA028245GA028246
length1,129411
definitionB6Ng01-209L02.b B6Ng01-209L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,729,663 - 72,730,803)(72,865,003 - 72,865,423)
sequence
gaattcatatcacatagtgacacactgaatctaatcttagaacagtagag
acaaaagatcaaatattgctcatcaatgaaaaataacataaattatttgt
gttgttttgacaaaaattatataaatgaatttgcctgtattttattttat
gctatatattgctactatttcatctttctgaaaataactgtaaaatacat
agttgaagtttatttttctctatttataatggcattaaaatagtctgttt
ttatggcttgtattgaaagctgctgattccatttctacaggattgtaaat
aggaaatcttaacaaagatatttttgtctgtttttttgacacagtagaaa
atagtacctacagctaaattggtaactttggcattgagtgtgagatagct
taccacagacttttctatcaaatttccatagttattaattgattatagaa
tttgaagaggcaatacaaatttcagtctattttttagatattgcataagc
cctaaatctactgaaaaggagatacaaactaattacagcaagatgatgtt
tttctatcatctcccttgtagtgggtagcttgcaaatataatgccaataa
ttttgatgaattgtgaaaacaaaaccgtatggtaaaggtagaagaatcag
agacactgttggcattaaaatgctagaaaacaacctaaagtttctggtta
aaaaaaaaaaaaaaaaagataaatcctgtttggcttaatcaacaaagatt
ttaggtgcttacagtctcagtttaaagcaatccatctctaatgtgaacac
tgtgattgtcattcaaaacgcagtttgtaaaatggtcatctttaggcacc
tctaatttatgactctttcagagatattttattttaatttcactacatct
cttttgttaatagttaccattagaaatgacttttttcccggactaactct
attccagtactagtagtttagcaggcatggagagccagctaaacagttag
actaccaacttctcttctgtacactgggtttgatttgtagtaccaacata
gccagctcacacttttgaactgcagttccttggcagcaacactcattttg
cttcacagaatgcatgcatgtgtctcaga

actcctattacctacttatagggggttaatttgtttcacactaactccat
tttgttgctctgactggatctctctatgtagccttgtgggtcatgaactt
cagttctttctgcttccacttcctgaatgctgtgatttcaggcgtgtagc
atcacacttgttaggacaccaagagataagacaatggaagcacatatttt
atagaagccaatataatttacattttttaattctcccaacacacacacac
acagagagagagagagagagagagagagagagagagagagagagagacag
agacagagacagagacagagacagacaaagacagagagacagagagacag
agagacagatagacagagacagacagagagagacagatacagagtggagg
ggggggggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72729663_72730803
seq2: B6Ng01-209L02.b_44_1172

seq1  GAATTCATATCACATAGTGACACACTGAATCTAATCTTAGAACAGTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCACATAGTGACACACTGAATCTAATCTTAGAACAGTAGAG  50

seq1  ACAAAAGATCAAATATTGCTCATCAATGAAAAATAACATAAATTATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGATCAAATATTGCTCATCAATGAAAAATAACATAAATTATTTGT  100

seq1  GTTGTTTTGACAAAAATTATATAAATGAATTTGCCTGTATTTTATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGACAAAAATTATATAAATGAATTTGCCTGTATTTTATTTTAT  150

seq1  GCTATATATTGCTACTATTTCATCTTTCTGAAAATAACTGTAAAATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATATTGCTACTATTTCATCTTTCTGAAAATAACTGTAAAATACAT  200

seq1  AGTTGAAGTTTATTTTTCTCTATTTATAATGGCATTAAAATAGTCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGTTTATTTTTCTCTATTTATAATGGCATTAAAATAGTCTGTTT  250

seq1  TTATGGCTTGTATTGAAAGCTGCTGATTCCATTTCTACAGGATTGTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTTGTATTGAAAGCTGCTGATTCCATTTCTACAGGATTGTAAAT  300

seq1  AGGAAATCTTAACAAAGATATTTTTGTCTGTTTTTTTGACACAGTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCTTAACAAAGATATTTTTGTCTGTTTTTTTGACACAGTAGAAA  350

seq1  ATAGTACCTACAGCTAAATTGGTAACTTTGGCATTGAGTGTGAGATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCTACAGCTAAATTGGTAACTTTGGCATTGAGTGTGAGATAGCT  400

seq1  TACCACAGACTTTTCTATCAAATTTCCATAGTTATTAATTGATTATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGACTTTTCTATCAAATTTCCATAGTTATTAATTGATTATAGAA  450

seq1  TTTGAAGAGGCAATACAAATTTCAGTCTATTTTTTAGATATTGCATAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAGGCAATACAAATTTCAGTCTATTTTTTAGATATTGCATAAGC  500

seq1  CCTAAATCTACTGAAAAGGAGATACAAACTAATTACAGCAAGATGATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCTACTGAAAAGGAGATACAAACTAATTACAGCAAGATGATGTT  550

seq1  TTTCTATCATCTCCCTTGTAGTGGGTAGCTTGCAAATATAATGCCAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCATCTCCCTTGTAGTGGGTAGCTTGCAAATATAATGCCAATAA  600

seq1  TTTTGATGAATTGTGAAAACAAAACCGTATGGTAAAGGTAGAAGAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGAATTGTGAAAACAAAACCGTATGGTAAAGGTAGAAGAATCAG  650

seq1  AGACACTGTTGGCATTAAAATGCTAGAAAACAACCTAAAGTTTCTGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGTTGGCATTAAAATGCTAGAAAACAACCTAAAGTTTCTGGTTA  700

seq1  AAAAAAAAAAAAAAAAAGATAAATCCTGTTTGGCTTAATCAACAAAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGATAAATCCTGTTTGGCTTAATCAACAAAGATT  750

seq1  TTAGGTGCTTACAGTCTCAGTTTAAAGCAATCCATCTCTAATGTGAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCTTACAGTCTCAGTTTAAAGCAATCCATCTCTAATGTGAACAC  800

seq1  TGTGATTGTCATTCAAAACGCAGTTTGTAAAATGGTCATCTTTAGGCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGTCATTCAAAACGCAGTTTGTAAAATGGTCATCTTTAGGCACC  850

seq1  TCTAATTTATGACTCTTTCAGAGATATTTTATTTTAATTTCACTACATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTATGACTCTTTCAGAGATATTTTATTTTAATTTCACTACATCT  900

seq1  CTTTTGTTAATAGTTACCATTAGAAATGACTTTTTT-CCGGACTAACTCT  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTTGTTAATAGTTACCATTAGAAATGACTTTTTTCCCGGACTAACTCT  950

seq1  ATTCCAGTACTAGTAGTTTAGGCAGGCATGGAGAGCCAGCTAACCAGTTA  999
      |||||||||||||||||||| |||||||||||||||||||||| ||||| 
seq2  ATTCCAGTACTAGTAGTTTA-GCAGGCATGGAGAGCCAGCTAAACAGTT-  998

seq1  AGACTACCAACTTCTCTTCTGTTACACTTGGGTTTGATTTGTAGTACCAA  1049
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  AGACTACCAACTTCTCTTCTG-TACAC-TGGGTTTGATTTGTAGTACCAA  1046

seq1  CATAG-CAGCTCACAACCTTTTGAAACTGCAGTTCCTTGGCAGCCAACAC  1098
      ||||| |||||||||  |||||| ||||||||||||||||||| ||||||
seq2  CATAGCCAGCTCACA--CTTTTG-AACTGCAGTTCCTTGGCAG-CAACAC  1092

seq1  TCATTTTGGCCTTCACAAGCACTGCATGCATGTGGTTCTCAGA  1141
      ||||||||  |||||||   | ||||||||||||  |||||||
seq2  TCATTTTG--CTTCACA--GAATGCATGCATGTG--TCTCAGA  1129


seq1: chr3_72865003_72865423
seq2: B6Ng01-209L02.g_64_480 (reverse)

seq1  TGACCCCCCCCCCTCCACTCTGTATCTGTCTCTCTCTGTCTGTCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCCCCCCTCCACTCTGTATCTGTCTCTCTCTGTCTGTCTCTGTC  50

seq1  TATCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTTTGTCTGTCTCTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTTTGTCTGTCTCTGTCTC  100

seq1  TGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  150
      ||||||||||||||    ||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTCTCTG----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  146

seq1  TCTCTCTCTCTCTGTGTGTGTGTGTGTTGGGAGAATTAAAAAATGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTGTGTGTGTGTGTGTTGGGAGAATTAAAAAATGTAAAT  196

seq1  TATATTGGCTTCTATAAAATATGTGCTTCCATTGTCTTATCTCTTGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGCTTCTATAAAATATGTGCTTCCATTGTCTTATCTCTTGGTGT  246

seq1  CCTAACAAGTGTGATGCTACACGCCTGAAATCACAGCATTCAGGAAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAGTGTGATGCTACACGCCTGAAATCACAGCATTCAGGAAGTGG  296

seq1  AAGCAGAAAGAACTGAAGTTCATGACCCACAAGGCTACATAGAGAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAGAACTGAAGTTCATGACCCACAAGGCTACATAGAGAGATCC  346

seq1  AGTCAGAGCAACAAAATGGAGTTAGTGTGAAACAAATTAACCCCCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGCAACAAAATGGAGTTAGTGTGAAACAAATTAACCCCCTATAA  396

seq1  GTAGGTAATAGGAGTGAATTC  421
      |||||||||||||||||||||
seq2  GTAGGTAATAGGAGTGAATTC  417


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