BAC Information

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BAC

Clone NameB6Ng01-209N18
Chromosome3 (Build37)
Map Location 49,658,025 - 49,743,413
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209N18.bB6Ng01-209N18.g
ACCGA028363GA028364
length879337
definitionB6Ng01-209N18.b B6Ng01-209N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,742,536 - 49,743,413)(49,658,025 - 49,658,361)
sequence
gaattcactcaatttagattctcacagttctcccttaaagaagttgggaa
agtggtgattacaaatcagtacaatttcgtcccttttcactcatcataag
ctacatctatgttaaatcatgcgtgaatatctagggtgcttcttcattaa
gctacaggaaatggagcctttcatgaattttaagtcatagtcccagactg
tattactaattcttatatatatgtattacagtatatttaatataatattg
tatatattaatgtataataaatatatattgcatatttgctcatatatgct
cagtaagatgcaagcatgcaggtgtgcatacatgaatgaacaaatggaaa
atacatttctatctagtttctgcaaaaaactattgagaatctggagagca
tcctcagtggctaagaattctggctgctcttgcagagaactagagttggt
ttccagcacccacatggaagctcacaactatctgtagctcttgttccagg
ggaaccagtgccctttccgtgatcactgtacatacatggaacagagttat
aggtcctggcaagagactcacacaaaataaaaaaaaaataaaatgaaaag
taaaatttgttaaacttctgctttaagtgtgtagaagacgaggttgccga
aggctttgcagatcgtttcaagtgctgatttactaaattccaaaaaaacc
acaatattaaaatttacgtggttctttcttgttttataatttctaatcca
ttatagaatattatgtgtcttatactcaatatgtgtttactaaactatgg
ttgatttatgaattactctaaataaagcattttagaaaccccccccccgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtg

tataattagctatagaaacatttctacattacagaagaaaattagacctt
aacataaatgaagttcatctttgaaaacaattgcttgaaaatgcaaagac
caccaaaggtttagcagtgaactttcagtaatattttatgaaacattttt
acttcttaattagttaattatgctaactctaaacaaaagatggttgatat
ggaagtctgtggtagatggatgggggtgtgtgtgaacattggtctaacaa
ttcagttcctagcagattccattcccaaggatatgaaaatagagaacgga
gacaggaagctgtatagagtgtaatatttaaaatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49742536_49743413
seq2: B6Ng01-209N18.b_50_928 (reverse)

seq1  CACACACACACACACACACACACACACACAC-GGGGGGGGGTTTCTAAAA  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACGGGGGGGGGGTTTCTAAAA  50

seq1  TGCTTTATTTAGAGTAATTCATAAATCAACCATAGTTTAGTAAACACATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTTAGAGTAATTCATAAATCAACCATAGTTTAGTAAACACATA  100

seq1  TTGAGTATAAGACACATAATATTCTATAATGGATTAGAAATTATAAAACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATAAGACACATAATATTCTATAATGGATTAGAAATTATAAAACA  150

seq1  AGAAAGAACCACGTAAATTTTAATATTGTGGTTTTTTTGGAATTTAGTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACCACGTAAATTTTAATATTGTGGTTTTTTTGGAATTTAGTAA  200

seq1  ATCAGCACTTGAAACGATCTGCAAAGCCTTCGGCAACCTCGTCTTCTACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACTTGAAACGATCTGCAAAGCCTTCGGCAACCTCGTCTTCTACA  250

seq1  CACTTAAAGCAGAAGTTTAACAAATTTTACTTTTCATTTTATTTTTTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAGCAGAAGTTTAACAAATTTTACTTTTCATTTTATTTTTTTTT  300

seq1  TATTTTGTGTGAGTCTCTTGCCAGGACCTATAACTCTGTTCCATGTATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGTGAGTCTCTTGCCAGGACCTATAACTCTGTTCCATGTATGT  350

seq1  ACAGTGATCACGGAAAGGGCACTGGTTCCCCTGGAACAAGAGCTACAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATCACGGAAAGGGCACTGGTTCCCCTGGAACAAGAGCTACAGAT  400

seq1  AGTTGTGAGCTTCCATGTGGGTGCTGGAAACCAACTCTAGTTCTCTGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGCTTCCATGTGGGTGCTGGAAACCAACTCTAGTTCTCTGCAA  450

seq1  GAGCAGCCAGAATTCTTAGCCACTGAGGATGCTCTCCAGATTCTCAATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCAGAATTCTTAGCCACTGAGGATGCTCTCCAGATTCTCAATAG  500

seq1  TTTTTTGCAGAAACTAGATAGAAATGTATTTTCCATTTGTTCATTCATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCAGAAACTAGATAGAAATGTATTTTCCATTTGTTCATTCATGT  550

seq1  ATGCACACCTGCATGCTTGCATCTTACTGAGCATATATGAGCAAATATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACCTGCATGCTTGCATCTTACTGAGCATATATGAGCAAATATGC  600

seq1  AATATATATTTATTATACATTAATATATACAATATTATATTAAATATACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTTATTATACATTAATATATACAATATTATATTAAATATACT  650

seq1  GTAATACATATATATAAGAATTAGTAATACAGTCTGGGACTATGACTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACATATATATAAGAATTAGTAATACAGTCTGGGACTATGACTTAA  700

seq1  AATTCATGAAAGGCTCCATTTCCTGTAGCTTAATGAAGAAGCACCCTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGAAAGGCTCCATTTCCTGTAGCTTAATGAAGAAGCACCCTAGA  750

seq1  TATTCACGCATGATTTAACATAGATGTAGCTTATGATGAGTGAAAAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACGCATGATTTAACATAGATGTAGCTTATGATGAGTGAAAAGGGA  800

seq1  CGAAATTGTACTGATTTGTAATCACCACTTTCCCAACTTCTTTAAGGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTGTACTGATTTGTAATCACCACTTTCCCAACTTCTTTAAGGGAG  850

seq1  AACTGTGAGAATCTAAATTGAGTGAATTC  878
      |||||||||||||||||||||||||||||
seq2  AACTGTGAGAATCTAAATTGAGTGAATTC  879


seq1: chr3_49658025_49658361
seq2: B6Ng01-209N18.g_69_405

seq1  TATAATTAGCTATAGAAACATTTCTACATTACAGAAGAAAATTAGACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAGCTATAGAAACATTTCTACATTACAGAAGAAAATTAGACCTT  50

seq1  AACATAAATGAAGTTCATCTTTGAAAACAATTGCTTGAAAATGCAAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATGAAGTTCATCTTTGAAAACAATTGCTTGAAAATGCAAAGAC  100

seq1  CACCAAAGGTTTAGCAGTGAACTTTCAGTAATATTTTATGAAACATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGGTTTAGCAGTGAACTTTCAGTAATATTTTATGAAACATTTTT  150

seq1  ACTTCTTAATTAGTTAATTATGCTAACTCTAAACAAAAGATGGTTGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTAATTAGTTAATTATGCTAACTCTAAACAAAAGATGGTTGATAT  200

seq1  GGAAGTCTGTGGTAGATGGATGGGGGTGTGTGTGAACATTGGTCTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTGTGGTAGATGGATGGGGGTGTGTGTGAACATTGGTCTAACAA  250

seq1  TTCAGTTCCTAGCAGATTCCATTCCCAAGGATATGAAAATAGAGAACGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCTAGCAGATTCCATTCCCAAGGATATGAAAATAGAGAACGGA  300

seq1  GACAGGAAGCTGCATAGAGTGTAATAGTTAAAATGCA  337
      |||||||||||| ||||||||||||| ||||||||||
seq2  GACAGGAAGCTGTATAGAGTGTAATATTTAAAATGCA  337


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