BAC Information

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BAC

Clone NameB6Ng01-209O15
Chromosome3 (Build37)
Map Location 90,122,779 - 90,248,292
singlet/doubletdoublet
Overlap geneGatad2b, Slc27a3, Ints3
Upstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Downstream geneNpr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209O15.bB6Ng01-209O15.g
ACCGA028398GA028399
length1,009755
definitionB6Ng01-209O15.b B6Ng01-209O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,122,779 - 90,123,788)(90,247,743 - 90,248,292)
sequence
gaattccattgtcagataaatgcagacatttgtgatttgcctaaagtaga
aagaacttggtgcctttcatagatagaggaaaggaaataaagaatgaaac
caagtcaacagtcaagcattaagaaattagagccaggcagtagtggtgca
tgcctttaatcccagcactcgggaggcagaaacaggtggatctctgaaag
ttcagggctagcctggtctacagagtgagttctaagacagccagggctat
agagagagagagagactctgtctcaaactgaaagagagaaattatttgtc
tatgctcctggtcacccacagtcaatagtatctgtgactacaagaagaag
gctaagtcaggcctaccttaggcatcttgtggactctgttagagagttgt
tttgctttctggaaagattaattttttaagtgtttacattaatgctgtag
gtgatcatgtttctgtttcctaggcgtagacagtgtaatgcctcagttcc
tttgggaaagaaaactccctcacagaaaagtctggtttagaaacataaaa
cataaaagatgaaatttaccttgtgtaatttctctattcctatatagtaa
tcaagtcattgagtggaatatgaccaactttaaattttttaaaatttatc
ttatatatatgggtgttttgcctgcattgtatctgtgcactgtttccatg
cctggtaacctacctcagagaccagaaaaaggaatttgattctcaggaac
cacagttatagatggttgtgaaccaccatgtgggtgcttggaactgaacc
tgaatttgttggaagaacagccaatgctcttaacctctgagttctctctt
agttcttttgctgctgtttccaatcagagttccatgtagctcagttgttt
ccaggctcactgatacagaagtatgaccccctacttctaagatgccgctc
agttttacatagtttacatagtgctagggattgacccaaacttccagtgt
ggctaggca
gaattctgggcctgaggatgtggttctgtcctagagtgaaggtttagcgt
ttgtgagaccctggcgtcaacacagaactagagggaagaaatttcttttg
taaaacaattgtagccgggcggtggtggcacacgtctttaatcccagcac
ttgggaggcagaggcatgaggatttctgagttcaaggccagcctggtcta
caaagtgagttccaggacagccagggctacacagagaaaccctgtctgga
aaacaaaacaaaacagaacaaaacaaaaaagtcaacaaaaaaacaattgt
taggtagtttgggtgatttaactaagagtggccccgccccataggctcat
aaatttgagtgcttactcatcagagagtgagatctgagaaggattaggag
gtgtgaccttgttggagttgggatagaggaaaatgaatcactgggggcag
gcactgagattcaaatgttcaagccagacccaatggcttcctcttcctac
tacctccagacccgggtgtaggagtctcagccactttctccagtaccatg
tccgtctgcatgccaccatgctacctgccataaatgataatgaactaacc
ctgtgaactgtaagcaagccccaattacttttctttttttttttctagga
gttgctatggtcacggtgtctcttaacagcaatagaacactaagacagtg
gctttatggggtacagtttagatttaggggtgagaggacttggcactacc
gccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90122779_90123788
seq2: B6Ng01-209O15.b_51_1059

seq1  GAATTCCATTGTCAGATAAATGCAGACATTTGTGATTTGCCTAAAGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTCAGATAAATGCAGACATTTGTGATTTGCCTAAAGTAGA  50

seq1  AAGAACTTGGTGCCTTTCATAGATAGAGGAAAGGAAATAAAGAATGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTGGTGCCTTTCATAGATAGAGGAAAGGAAATAAAGAATGAAAC  100

seq1  CAAGTCAACAGTCAAGCATTAAGAAATTAGAGCCAGGCAGTAGTGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAACAGTCAAGCATTAAGAAATTAGAGCCAGGCAGTAGTGGTGCA  150

seq1  TGCCTTTAATCCCAGCACTCGGGAGGCAGAAACAGGTGGATCTCTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATCCCAGCACTCGGGAGGCAGAAACAGGTGGATCTCTGAAAG  200

seq1  TTCAGGGCTAGCCTGGTCTACAGAGTGAGTTCTAAGACAGCCAGGGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCTAGCCTGGTCTACAGAGTGAGTTCTAAGACAGCCAGGGCTAT  250

seq1  AGAGAGAGAGAGAGACTCTGTCTCAAACTGAAAGAGAGAAATTATTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGACTCTGTCTCAAACTGAAAGAGAGAAATTATTTGTC  300

seq1  TATGCTCCTGGTCACCCACAGTCAATAGTATCTGTGACTACAAGAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCCTGGTCACCCACAGTCAATAGTATCTGTGACTACAAGAAGAAG  350

seq1  GCTAAGTCAGGCCTACCTTAGGCATCTTGTGGACTCTGTTAGAGAGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCAGGCCTACCTTAGGCATCTTGTGGACTCTGTTAGAGAGTTGT  400

seq1  TTTGCTTTCTGGAAAGATTAATTTTTTAAGTGTTTACATTAATGCTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCTGGAAAGATTAATTTTTTAAGTGTTTACATTAATGCTGTAG  450

seq1  GTGATCATGTTTCTGTTTCCTAGGCGTAGACAGTGTAATGCCTCAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATGTTTCTGTTTCCTAGGCGTAGACAGTGTAATGCCTCAGTTCC  500

seq1  TTTGGGAAAGAAAACTCCCTCACAGAAAAGTCTGGTTTAGAAACATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAAGAAAACTCCCTCACAGAAAAGTCTGGTTTAGAAACATAAAA  550

seq1  CATAAAAGATGAAATTTACCTTGTGTAATTTCTCTATTCCTATATAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGATGAAATTTACCTTGTGTAATTTCTCTATTCCTATATAGTAA  600

seq1  TCAAGTCATTGAGTGGAATATGACCAACTTT-AATTTTTTAAAATTTATC  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAAGTCATTGAGTGGAATATGACCAACTTTAAATTTTTTAAAATTTATC  650

seq1  TTATATATATGGGTGTTTTGCCTGCATTGTATCTGTGCACTGTTTCCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATATGGGTGTTTTGCCTGCATTGTATCTGTGCACTGTTTCCATG  700

seq1  CCTGGTAACCTACCTCAGAGACCAGAAAAAGGAATTTGATTCTCAGGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAACCTACCTCAGAGACCAGAAAAAGGAATTTGATTCTCAGGAAC  750

seq1  CACAGTTATAGATGGTTGTGAACCACCATGTGGGTGCTTGGAACTGAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTATAGATGGTTGTGAACCACCATGTGGGTGCTTGGAACTGAACC  800

seq1  TGAATTTGTTGGAAGAACAGCCAATGCTCTTAACCTCTGAGTTCTCTCTT  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAATTTGTTGGAAGAACAGCCAATGCTCTTAACCTCTGAGTTCTCTC-T  849

seq1  TAGTTCTTTTGCTGCTGTTTCCAATCAGAGTTCCATGTAGCTCAGGTTGT  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGTTCTTTTGCTGCTGTTTCCAATCAGAGTTCCATGTAGCTCA-GTTGT  898

seq1  TTCCAGGCTCACTGATACAGAAGTATGACCCCCTACTTCTAAGATG-CGC  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCCAGGCTCACTGATACAGAAGTATGACCCCCTACTTCTAAGATGCCGC  948

seq1  TCAGTTTTACATAGTTTTACATAGTGCTAGGGATTGAACCAGAACTTCCA  998
      |||||||||||||| |||||||||||||||||||||| ||| ||||||||
seq2  TCAGTTTTACATAG-TTTACATAGTGCTAGGGATTGACCCA-AACTTCCA  996

seq1  GTGT-GCTAGGCA  1010
      |||| ||||||||
seq2  GTGTGGCTAGGCA  1009

seq1: chr3_90247743_90248292
seq2: B6Ng01-209O15.g_265_819 (reverse)

seq1  TTGGCTGTAGTGCC-AGTCCTCTCACCCCTAAATCTAAACTGTACCCCAT  49
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGGCGGTAGTGCCAAGTCCTCTCACCCCTAAATCTAAACTGTACCCCAT  50

seq1  AAAGCCACTGTCTTAGTGTTCTATTGCTGTTAAGAGACACCGTGACCATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACTGTCTTAGTGTTCTATTGCTGTTAAGAGACACCGTGACCATA  100

seq1  GCAACTCCTAG--AAAAAAAAAGAAAAGTAATTGGGGCTTGCTTACAGTT  147
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GCAACTCCTAGAAAAAAAAAAAGAAAAGTAATTGGGGCTTGCTTACAGTT  150

seq1  CACAGGGTTAGTTCATTATCA-TTATGGCAGGTAGCATGGTGGCATGCAG  196
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACAGGGTTAGTTCATTATCATTTATGGCAGGTAGCATGGTGGCATGCAG  200

seq1  ACGGACATGGTACTGGAG-AAGTGGCTGAGACTCCTACACCCGGGTCTGG  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACGGACATGGTACTGGAGAAAGTGGCTGAGACTCCTACACCCGGGTCTGG  250

seq1  AGGTAGTAGGAAGAGGAAGCCATTGGGTCTGGCTTGAACATTTGAATCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTAGGAAGAGGAAGCCATTGGGTCTGGCTTGAACATTTGAATCTC  300

seq1  AGTGCCTGCCCCCAGTGATTCATTTTCCTCTATCCCAACTCCAACAAGGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGCCCCCAGTGATTCATTTTCCTCTATCCCAACTCCAACAAGGT  350

seq1  CACACCTCCTAATCCTTCTCAGATCTCACTCTCTGATGAGTAAGCACTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCCTAATCCTTCTCAGATCTCACTCTCTGATGAGTAAGCACTCA  400

seq1  AATTTATGAGCCTATGGGGCGGGGCCACTCTTAGTTAAATCACCCAAACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGAGCCTATGGGGCGGGGCCACTCTTAGTTAAATCACCCAAACT  450

seq1  ACCTAACAATTGTTTTTTTGTTGACTTTTTTGTTTTGTTCTGTTTTGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACAATTGTTTTTTTGTTGACTTTTTTGTTTTGTTCTGTTTTGTTT  500

seq1  TGTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA  550

seq1  CTTTG  550
      |||||
seq2  CTTTG  555