BAC Information

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BAC

Clone NameB6Ng01-209P24
Chromosome6 (Build37)3 (Build37)
Map Location 39,915,374 - 39,916,383106,378,960 - 106,379,473
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254
Downstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209P24.bB6Ng01-209P24.g
ACCGA028459GA028460
length1,014934
definitionB6Ng01-209P24.b B6Ng01-209P24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,915,374 - 39,916,383)(106,378,960 - 106,379,473)
sequence
gaattcagtcacttcggaagatggagactggtataaatggttttcaaatc
atggttttaaaaggggctattgtgtaggccactaccatttggcttttcag
tgagtggagaaagtagctcaagagagtgtgtttgaatggaggcagacttg
ttatccatctgagaggcatggattgattgtgagtggtgctaggcctatat
gcaaatctacctctttactagcaagccgagcctatttcctacagaacatt
ttatgccaaaggctgatagcaagtctcctcaaacagatctccattcaaag
ttgagattctactgcagcacactgccaggttttgcaagacatcaatgact
taagtacaatttttttcatggcctcgggacgctgtggatctgttctgggt
tctggctctgggatctgttagctgaatggtcctgttctgtatctatggac
tgatgggcttgcctgggtgcccttgttgagaaactttatgttcctttaat
cccttctcctacaggaccagcaagctagctacagcatattgtggagggaa
tcatggctaggctcagagttcattcggagcaaatgtatcactcctattgt
tttcttgtcaccgtgaccaagtatgtgacaaaaagcaatttacaggagga
agggtttatttggctcacagttgtgagcaatgtggcccaccatggtatac
aaggcatggtgtggctgggtccatacctgccacatgactgttgaccagga
accagagaaagggggaatataggtggctgtcctgtcttccccctttccct
ttttaaattagtcaagggatcccagcccatttggatgctatccccccata
tgcatttggttcttttccctctcagttaaacattctctggagacacttat
cataaatacaccaaaggattgagcctcactagtacattaaacacacctta
tttgacaactgaatttattgtatgctgttggccaaaccactcacagaagt
ccagattccaaggg
gaattccagcagggcattaggacgcaatcaagagcccgaacctgtggtgc
tgcccagtttacagccgcagggaaaagcaggactgtggcctaacaagacc
aaacataaccttgcctcccctcctagaacggttgacactgattgccaact
tgacaggttctagaatcgcctaggaggagacaagttctgggcatgtttgt
gaaggcatttgtagattgagctcattgagccccacaatgagtgtggacag
cccctgccctagggcaggaatattagaatagaaaggagaccccggcatag
tgtcacaagagacagctacatctgggtcctttcaataaaatcttgctagt
gtatgcaatggtgtcagcgtttggatgctgattatggggtggatccctgg
atatggcagtctctacatggtccatcctttcatctcagctccaaactttg
tctcagtaactccttccatgggtgttttgttcccaattctaaggaggggc
atagtgtccacacttcagtcttcattcttcttgagtttcatgtgtttagc
aaattgtatcttatatcttgggtatcctaggtttggggctaatatccact
tatcagtgagtgcatattgtgtgagttcctttgtgaatgtgttacctcac
tcaggatgatgccctccaggtccatccatttggctaggaatttcataaat
tcattctttttaatagctgagtagtactccattgtgtagatgtaccacat
tttctgtatccattcctctgttgaggggcatctgggttctttccagcttc
tgccttattataaataaggctgctatgaacatagtggagcatgtgtcctt
cttaccagttggggcatctttctggatatatgcccaggagaggtaatgct
gggatcctccggtagtactatggtccaattttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_39915374_39916383
seq2: B6Ng01-209P24.b_50_1063

seq1  GAATTCAGTCACTTCGGAAGATGGAGACTGGTATAAATGGTTTTCAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACTTCGGAAGATGGAGACTGGTATAAATGGTTTTCAAATC  50

seq1  ATGGTTTTAAAAGGGGCTATTGTGTAGGCCACTACCATTTGGCTTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTTAAAAGGGGCTATTGTGTAGGCCACTACCATTTGGCTTTTCAG  100

seq1  TGAGTGGAGAAAGTAGCTCAAGAGAGTGTGTTTGAATGGAGGCAGACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGAGAAAGTAGCTCAAGAGAGTGTGTTTGAATGGAGGCAGACTTG  150

seq1  TTATCCATCTGAGAGGCATGGATTGATTGTGAGTGGTGCTAGGCCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATCTGAGAGGCATGGATTGATTGTGAGTGGTGCTAGGCCTATAT  200

seq1  GCAAATCTACCTCTTTACTAGCAAGCCGAGCCTATTTCCTACAGAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCTACCTCTTTACTAGCAAGCCGAGCCTATTTCCTACAGAACATT  250

seq1  TTATGCCAAAGGCTGATAGCAAGTCTCCTCAAACAGATCTCCATTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCAAAGGCTGATAGCAAGTCTCCTCAAACAGATCTCCATTCAAAG  300

seq1  TTGAGATTCTACTGCAGCACACTGCCAGGTTTTGCAAGACATCAATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTCTACTGCAGCACACTGCCAGGTTTTGCAAGACATCAATGACT  350

seq1  TAAGTACAATTTTTTTCATGGCCTCGGGACGCTGTGGATCTGTTCTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACAATTTTTTTCATGGCCTCGGGACGCTGTGGATCTGTTCTGGGT  400

seq1  TCTGGCTCTGGGATCTGTTAGCTGAATGGTCCTGTTCTGTATCTATGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTGGGATCTGTTAGCTGAATGGTCCTGTTCTGTATCTATGGAC  450

seq1  TGATGGGCTTGCCTGGGTGCCCTTGTTGAGAAACTTTATGTTCCTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCTTGCCTGGGTGCCCTTGTTGAGAAACTTTATGTTCCTTTAAT  500

seq1  CCCTTCTCCTACAGGACCAGCAAGCTAGCTACAGCATATTGTGGAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCCTACAGGACCAGCAAGCTAGCTACAGCATATTGTGGAGGGAA  550

seq1  TCATGGCTAGGCTCAGAGTTCATTCGGAGCAAATGTATCACTCCTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTAGGCTCAGAGTTCATTCGGAGCAAATGTATCACTCCTATTGT  600

seq1  TTTCTTGTCACCGTGACCAAGTATGTGACAAAAAGCAATTTACAGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTCACCGTGACCAAGTATGTGACAAAAAGCAATTTACAGGAGGA  650

seq1  AGGGTTTATTTGGCTCACAGTTGTGAGCAATGTGGCCCACCATGGTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTATTTGGCTCACAGTTGTGAGCAATGTGGCCCACCATGGTATAC  700

seq1  AAGGCATGGTGTGGCTGGGTCCATACCTGCCACATGACTGTTGACCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGGTGTGGCTGGGTCCATACCTGCCACATGACTGTTGACCAGGA  750

seq1  ACCAGAGAAAGGGGGAATATAGGTGGCTGTCCTGTCTTCCCCCTTTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAAAGGGGGAATATAGGTGGCTGTCCTGTCTTCCCCCTTTCCCT  800

seq1  TTTTAAATTAGTC-AGGGATCCCAGCCCA-TTGGATGCTATCCCCCCATA  848
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  TTTTAAATTAGTCAAGGGATCCCAGCCCATTTGGATGCTATCCCCCCATA  850

seq1  TGCATTTGGTTCTTTTCCCTCTCAGTTAAACA-TCTCTGGAGACACTTAT  897
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCATTTGGTTCTTTTCCCTCTCAGTTAAACATTCTCTGGAGACACTTAT  900

seq1  CATAAATACACCAAA-GAATGAGCCTCACTAGTACATTAAACACAACCTA  946
      ||||||||||||||| || |||||||||||||||||||||||||| | ||
seq2  CATAAATACACCAAAGGATTGAGCCTCACTAGTACATTAAACACACCTTA  950

seq1  ATTGACAACTGAATTTAATTGTATGCTGTTGGCCCAAACCACTCACAG-A  995
       ||||||||||||||| ||||||||||||||| ||||||||||||||| |
seq2  TTTGACAACTGAATTT-ATTGTATGCTGTTGG-CCAAACCACTCACAGAA  998

seq1  GTCCAGATT-CAAGGG  1010
      ||||||||| ||||||
seq2  GTCCAGATTCCAAGGG  1014

seq1: chr3_106378960_106379473
seq2: B6Ng01-209P24.g_480_997 (reverse)

seq1  AGAAAATTGGA-CATAGTACTACCGGAGGAT-CCAGCAATACCTCTCCTG  48
      ||||||||||| ||||||||||||||||||| |||||| |||||||||||
seq2  AGAAAATTGGACCATAGTACTACCGGAGGATCCCAGCATTACCTCTCCTG  50

seq1  AGCATATATCCAG-AACATGTCCCAACCGGTAAGAAGGACACATGCTCCA  97
       |||||||||||| || ||| |||||| ||||||||||||||||||||||
seq2  GGCATATATCCAGAAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA  100

seq1  CTATGTTCATAGCAGCCTTATTTATAAT-AGCCAGAAGCTGGAAAGAACC  146
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  CTATGTTCATAGCAGCCTTATTTATAATAAGGCAGAAGCTGGAAAGAACC  150

seq1  CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA  196
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA  200

seq1  CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA  250

seq1  GCCAAATGGATGGACCTGGAGGGCGTCATCCTGAGTGAGGTAACACAATC  296
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC  300

seq1  ACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCA  346
      |||||| ||||||||||||||| |||||||||||||||||||||||||| 
seq2  ACAAAGGAACTCACACAATATGCACTCACTGATAAGTGGATATTAGCCCC  350

seq1  AAACTTAGGATACCCAAGATATAAGATACATTTTGCTAAACGCATGAAAC  396
      |||| ||||||||||||||||||||||||| |||||||||| ||||||||
seq2  AAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAAC  400

seq1  TCAAGAAGAACAAAGACCAAAGTGTGGACACTGTGCCCCTTCTTAGAATT  446
      ||||||||||  |||||  ||||||||||||| ||||||| |||||||||
seq2  TCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATT  450

seq1  GGGAACAAAACACCCATGGAAGGAATTACAGAGACAAAGTTTGGAGCTGT  496
      |||||||||||||||||||||||| |||| ||||||||||||||||||| 
seq2  GGGAACAAAACACCCATGGAAGGAGTTACTGAGACAAAGTTTGGAGCTGA  500

seq1  GACGAAAGGATGGACCAT  514
      || |||||||||||||||
seq2  GATGAAAGGATGGACCAT  518