BAC Information

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BAC

Clone NameB6Ng01-210C11
Chromosome3 (Build37)
Map Location 145,260,943 - 145,366,167
singlet/doubletdoublet
Overlap gene2410019A14Rik, Cyr61
Upstream geneLOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1
Downstream geneDdah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210C11.bB6Ng01-210C11.g
ACCGA028571GA028572
length1,1661,017
definitionB6Ng01-210C11.b B6Ng01-210C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,260,943 - 145,262,131)(145,365,146 - 145,366,167)
sequence
gaattccattattctagaataagccatgatttaaaaaaaaaaattaagcc
accagatagcagtgagctgacttataccctattaagtcttggactctccc
ctcaaccccccaaaaagtcagaggttcagttctgtactttagagtcagtt
gttttcacctttaacccaaagacctaggaggagacatatctaccaccgtc
ctaaaacataggttatatttgtggcaggtgtgcatcacaacttgaaattt
tacagctgtgattgcttccgtcagtgaccttatttttagtggaaaattac
cgtgtactagagacgattaaattgtcacatctgggaagagttgagctttg
ctattttatattttagatagtggacgggtagagatccagagcatcaccac
ctagatgggacgtagcgttgtttgtggccctcctctttttaagtctctag
aatgtgaggaatagaagcctgcgccctagcttgctggggcagacagaagg
aagttggctgatgtctttgaaagattgaggatcaggctcctagttaccat
caacctttgagatgcctgttgagcctcctgtgtgagcctgcttgggttct
cagtacccatgtggagagaaaaaactgtaaaaatctatgtagtaagtgtt
tttcattatgcctgcttggtttgctcagtaagactggcttctcacggtaa
ccaggcctaaccctaacagttccaggcatctgatgtgtaacgtgctggtc
agtggtatgtatctctgaacatttctttgctgggagcatggtattttttt
taaatagcagtaatattggggtttgagtccatgtagcttttggcaatcta
aagcaaccaagtgaacagtgaatgctataaatgagataaatactgaaaag
tattagctaaacacagaaaatcatttgccaaaaaagctaaaatcatagaa
catccctttacttgtgaagtccttaggggagccttgtggttaggattaaa
tgtgtagaaggtgagctatttcaagtatgcccctgccgctgagagacccc
tggtagtgtttgcccctaggaaagtcaagtgcatcattgtatactaacat
aatttctgtcgtatctaatgtatcgcctgtccttctacgtactacaacct
ggggttatttcattga
gaattctacggtattcacaaatgttatttgtggaatagggaagtcatatt
tctagctacctcataaagctattactgtatttaaaggtttccaatggttt
atttatagctaggtgcccattttttgtgtataagggatctatttgacttg
aatttgtactcctgtgagagcctgaagctggttacagctcaacacagtga
tttaatagacgcggttcacctagagtcccagcatcatcgcatactgtggc
cactgacttcagatattctcctttttggatttttcaaattcctttgtctg
cattccagggcgagtcattgcaatcagatgcacatgcagattcactgcaa
tcggatgcacatgcagatactatttaaatatctgtacaaaggcagactgt
gtgtgaatacatgtggtgacaaaaattcatgaagtgaaatttacccttac
ctacttacttcttgatgcgttttgatattttccagtctattttattactt
ctttttaatagaatatgcagatgattacagtgacgcactttatttccctg
cccattgataggttacaacttggagtgtgagaaactctggtctccctggc
cctctaaagagctacataagggagtgaaagggaaggttgttagagggcat
aaatgtggacgtgtaattgaaacgactcaggaaacgcggaaatgctgctg
aaaggattctagttttcttatgtttctgtcttgttaaagtaatactttta
tttattatttgaaaatttaatacatgtgtatcttggacgtgtttatcgca
actctcctctttttcctggatccctcctgtggtggtttgaatgaagatgg
ctttcgtaggcttgtatattttcatgatatacatgataaattgtttaaag
gaggattagaagatgtggcctttataataggagtgtggcctcgtcgtaga
gtgtggccgcattgtaggggtgttgcctttgtagcagtatggcctcatta
tagagtgtggcttgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145260943_145262131
seq2: B6Ng01-210C11.b_47_1212

seq1  GAATTCCATTATTCTAGAATAAGCCATGATTTAAAAAAAAAAATTAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATTCTAGAATAAGCCATGATTTAAAAAAAAAAATTAAGCC  50

seq1  ACCAGATAGCAGTGAGCTGACTTATACCCTATTAAGTCTTGGACTCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATAGCAGTGAGCTGACTTATACCCTATTAAGTCTTGGACTCTCCC  100

seq1  CTCAACCCCCCAAAAAGTCAGAGGTTCAGTTCTGTACTTTAGAGTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCCCCCAAAAAGTCAGAGGTTCAGTTCTGTACTTTAGAGTCAGTT  150

seq1  GTTTTCACCTTTAACCCAAAGACCTAGGAGGAGACATATCTACCACCGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACCTTTAACCCAAAGACCTAGGAGGAGACATATCTACCACCGTC  200

seq1  CTAAAACATAGGTTATATTTGTGGCAGGTGTGCATCACAACTTGAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACATAGGTTATATTTGTGGCAGGTGTGCATCACAACTTGAAATTT  250

seq1  TACAGCTGTGATTGCTTCCGTCAGTGACCTTATTTTTAGTGGAAAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGTGATTGCTTCCGTCAGTGACCTTATTTTTAGTGGAAAATTAC  300

seq1  CGTGTACTAGAGACGATTAAATTGTCACATCTGGGAAGAGTTGAGCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACTAGAGACGATTAAATTGTCACATCTGGGAAGAGTTGAGCTTTG  350

seq1  CTATTTTATATTTTAGATAGTGGACGGGTAGAGATCCAGAGCATCACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTATATTTTAGATAGTGGACGGGTAGAGATCCAGAGCATCACCAC  400

seq1  CTAGATGGGACGTAGCGTTGTTTGTGGCCCTCCTCTTTTTAAGTCTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGGACGTAGCGTTGTTTGTGGCCCTCCTCTTTTTAAGTCTCTAG  450

seq1  AATGTGAGGAATAGAAGCCTGCGCCCTAGCTTGCTGGGGCAGACAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGGAATAGAAGCCTGCGCCCTAGCTTGCTGGGGCAGACAGAAGG  500

seq1  AAGTTGGCTGATGTCTTTGAAAGATTGAGGATCAGGCTCCTAGTTACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCTGATGTCTTTGAAAGATTGAGGATCAGGCTCCTAGTTACCAT  550

seq1  CAACCTTTGAGATGCCTGTTGAGCCTCCTGTGTGAGCCTGCTTGGGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTGAGATGCCTGTTGAGCCTCCTGTGTGAGCCTGCTTGGGTTCT  600

seq1  CAGTACCCATGTGGAGAGAAAAAACTGTAAAAATCTATGTAGTAAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCATGTGGAGAGAAAAAACTGTAAAAATCTATGTAGTAAGTGTT  650

seq1  TTTCATTATGCCTGCTTGGTTTGCTCAGTAAGACTGGCTTCTCACGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTATGCCTGCTTGGTTTGCTCAGTAAGACTGGCTTCTCACGGTAA  700

seq1  CCAGGCCTAACCCTAACAGTTCCAGGCATCTGATGTGTAACGTGCTGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTAACCCTAACAGTTCCAGGCATCTGATGTGTAACGTGCTGGTC  750

seq1  AGTGGTATGTATCTCTGAACATTTCTTTGCTGGGAGCATGGTATTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTATGTATCTCTGAACATTTCTTTGCTGGGAGCATGGTATTTTTTT  800

seq1  TAAATAGCAGTAATATTGGGGTTTGAGTCCATGTAGCTTTTGGCAATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCAGTAATATTGGGGTTTGAGTCCATGTAGCTTTTGGCAATCTA  850

seq1  AAGCAACCAAGTGAACAGTGAATGCTATAAATGAGATAAAATACTGAAAA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGCAACCAAGTGAACAGTGAATGCTATAAATGAGAT-AAATACTGAAAA  899

seq1  GTATTAGCTAAACACAGAAAATCATTTGCCAAAAAAAGCTAAAATCAATA  950
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GTATTAGCTAAACACAGAAAATCATTTGCC-AAAAAAGCTAAAATC-ATA  947

seq1  GAAACATCCCTTTACTTGTGAAGTCCCTTAGGGGAAGCCTTGTGGTTAGG  1000
      | |||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  G-AACATCCCTTTACTTGTGAAGT-CCTTAGGGG-AGCCTTGTGGTTAGG  994

seq1  ATTAAATGTGTAGAAGGTGAGCTATTTCAAGTATGCCCCCTGCGGCCTGA  1050
      ||||||||||||||||||||||||||||||||||| ||||||| | ||||
seq2  ATTAAATGTGTAGAAGGTGAGCTATTTCAAGTATG-CCCCTGCCG-CTGA  1042

seq1  GAAGACCCCCTGGTAGTGTTTGCCCCTAGGAAAAGTTCAGTTGCATCATT  1100
      | ||| |||||||||||||||||||||||||||   |||  |||||||||
seq2  G-AGA-CCCCTGGTAGTGTTTGCCCCTAGGAAA--GTCAAGTGCATCATT  1088

seq1  GTATACTATACATTAATTTTCTGTTCCGTTATCTAATGTAATCGCCTGTC  1150
      |||||||| ||||  | |||||||  || |||||||||| ||||||||||
seq2  GTATACTA-ACAT--AATTTCTGT--CG-TATCTAATGT-ATCGCCTGTC  1131

seq1  TTTCTTAGTGTAACTACAACTGGGGGTTATTTTAATTGA  1189
       ||||  ||   ||||||||  ||||||| ||| |||||
seq2  CTTCTACGT---ACTACAACCTGGGGTTA-TTTCATTGA  1166

seq1: chr3_145365146_145366167
seq2: B6Ng01-210C11.g_65_1081 (reverse)

seq1  CTACAAGGCCACACCTCCTATAATGAGGCCATACTGCCTACAAAGCCACA  50
      |||||| |||||||   ||||||||||||||||||| |||||||| ||  
seq2  CTACAA-GCCACAC--TCTATAATGAGGCCATACTG-CTACAAAGGCAAC  46

seq1  CCCCCTACAATGCGGCCACACCTCCTACGACGAGGCCACACCTCCTATTA  100
       ||||||||||||||||||||   |||||||||||||||| |||||||||
seq2  ACCCCTACAATGCGGCCACAC--TCTACGACGAGGCCACA-CTCCTATTA  93

seq1  T-AAGGCCACATCTTCTAATCCTCC-TTAAACAATTTATCATGTATATCA  148
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAAGGCCACATCTTCTAATCCTCCTTTAAACAATTTATCATGTATATCA  143

seq1  TGAAAATATACAAGCCTACGAAAGCCATCTTCATTCAAACCACCACAGGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATACAAGCCTACGAAAGCCATCTTCATTCAAACCACCACAGGA  193

seq1  GGGATCCAGGAAAAAGAGGAGAGTTGCGATAAACACGTCCAAGATACACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCAGGAAAAAGAGGAGAGTTGCGATAAACACGTCCAAGATACACA  243

seq1  TGTATTAAATTTTCAAATAATAAATAAAAGTATTACTTTAACAAGACAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAATTTTCAAATAATAAATAAAAGTATTACTTTAACAAGACAGA  293

seq1  AACATAAGAAAACTAGAATCCTTTCAGCAGCATTTCCGCGTTTCCTGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGAAAACTAGAATCCTTTCAGCAGCATTTCCGCGTTTCCTGAGT  343

seq1  CGTTTCAATTACACGTCCACATTTATGCCCTCTAACAACCTTCCCTTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCAATTACACGTCCACATTTATGCCCTCTAACAACCTTCCCTTTCA  393

seq1  CTCCCTTATGTAGCTCTTTAGAGGGCCAGGGAGACCAGAGTTTCTCACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTATGTAGCTCTTTAGAGGGCCAGGGAGACCAGAGTTTCTCACAC  443

seq1  TCCAAGTTGTAACCTATCAATGGGCAGGGAAATAAAGTGCGTCACTGTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTGTAACCTATCAATGGGCAGGGAAATAAAGTGCGTCACTGTAA  493

seq1  TCATCTGCATATTCTATTAAAAAGAAGTAATAAAATAGACTGGAAAATAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCATATTCTATTAAAAAGAAGTAATAAAATAGACTGGAAAATAT  543

seq1  CAAAACGCATCAAGAAGTAAGTAGGTAAGGGTAAATTTCACTTCATGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGCATCAAGAAGTAAGTAGGTAAGGGTAAATTTCACTTCATGAAT  593

seq1  TTTTGTCACCACATGTATTCACACACAGTCTGCCTTTGTACAGATATTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCACCACATGTATTCACACACAGTCTGCCTTTGTACAGATATTTA  643

seq1  AATAGTATCTGCATGTGCATCCGATTGCAGTGAATCTGCATGTGCATCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATCTGCATGTGCATCCGATTGCAGTGAATCTGCATGTGCATCTG  693

seq1  ATTGCAATGACTCGCCCTGGAATGCAGACAAAGGAATTTGAAAAATCCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAATGACTCGCCCTGGAATGCAGACAAAGGAATTTGAAAAATCCAA  743

seq1  AAAGGAGAATATCTGAAGTCAGTGGCCACAGTATGCGATGATGCTGGGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAATATCTGAAGTCAGTGGCCACAGTATGCGATGATGCTGGGAC  793

seq1  TCTAGGTGAACCGCGTCTATTAAATCACTGTGTTGAGCTGTAACCAGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGAACCGCGTCTATTAAATCACTGTGTTGAGCTGTAACCAGCTT  843

seq1  CAGGCTCTCACAGGAGTACAAATTCAAGTCAAATAGATCCCTTATACACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTCACAGGAGTACAAATTCAAGTCAAATAGATCCCTTATACACA  893

seq1  AAAAATGGGCACCTAGCTATAAATAAACCATTGGAAACCTTTAAATACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGCACCTAGCTATAAATAAACCATTGGAAACCTTTAAATACAG  943

seq1  TAATAGCTTTATGAGGTAGCTAGAAATATGACTTCCCTATTCCACAAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTTTATGAGGTAGCTAGAAATATGACTTCCCTATTCCACAAATA  993

seq1  ACATTTGTGAATACCGTAGAATTC  1022
      ||||||||||||||||||||||||
seq2  ACATTTGTGAATACCGTAGAATTC  1017