BAC Information

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BAC

Clone NameB6Ng01-210E15
Chromosome3 (Build37)
Map Location 122,083,067 - 122,271,808
singlet/doubletdoublet
Overlap geneLOC100043726, Bcar3, Fnbp1l
Upstream genePpia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117
Downstream genePpia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210E15.bB6Ng01-210E15.g
ACCGA028667GA028668
length1,1081,096
definitionB6Ng01-210E15.b B6Ng01-210E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,270,694 - 122,271,808)(122,083,067 - 122,084,173)
sequence
gaattccctttgtatataaatgtaattatttttgtttgtttgttctgttt
gtttgctgatggttataatcttcagcatctccaagaaggacgaaaagctc
aacaataccttgacatgtgttggaaacagatggataatgtgagtaacagt
gttttcatgtttaatgaaaaacgcacagacggacttagccctaagcccca
tgaagcgtcacatcttggtcccatgattctcagtgcattaggtttagcag
cagtgccattgcccaccaagccgtcccccgtccccccacacctgctcctg
gaggctgtgtccaggtctcaatctgtgggctgtgtagtaggtgagctatt
attcataatctgccaattttttttgttgtataataactaagaaatataag
ggattgagctcatttcattttcctttttccttatgtaaatagtgggacaa
attctttagtcttcatatcctggtaaatactagagatacttatccagtaa
gtggggtttggagaataaggaaacagttatcttgggaaactatttgcttg
agaggagagaactaagattgtggtttttgaatgttttaatggactggatt
tctctggccctcctttttttaacatatgaatacagaagagcaatgactac
tttataggaagtatttcttctaactcagtagtccagtaattctgtacgct
tctaactgcagaagaaaaagaaaaccttatagaacagacttagaaaacat
actgcatactgtttacttaaaattccctaaggtcctttataatgtggatt
ttttaaaaggttctgttatacataaacaaggtgtccacatagacactata
gtcttgtttacttgatatgctcgattgaaagactttgcagtataagatga
actttttaaatgttcaggtttccaagtgattggctcttagctagcatttt
tttttttttttacaatagataactgtagtctttagaattgtgctgaagaa
agtttgtgtgtgtgtgtgtgtgtgtgtgtatttaataggctagtgggctg
tcagaaaggctgaagaactgacatggtacaagttcatgccagatactggg
tggtttct
gaattcagcttctatgttgtaatgcagaaaggataaatgccacattactg
gtgtggtcctccacgtgttcatgcatccaaatacttggatcccaactgca
ggtagtatcttgggatgtcatgaaaccttagggaggcaaagcacagctag
aggaagtgagtcctgtgaggggcaggcctgaaggtacacagtctggccac
ttcctgacctgcctgatccacgaagctatcaggaagtaaggagtctcagc
catacataggttcctattgccaggatgatggctgtggtcacagccatgag
ctgagctcctccctcagccataccttcctcatcaagatggtctgtaccct
tacgacaaaacaaaaacaagtccttcctcccttaagtctctgctcgtcag
atatttagtcacagcaaggacagaagagtagtgaggaaagacaccggtgg
acagactgcagccatcccaccttaggcagggtatgctctgcagagtctct
cggagggagcgtgtacaattgaagccaagagtctcatcgtggccactggc
tcctaagccacctttactggccctcctctcacgtaatgcctgctgccggc
ccattctctagaaaatcatcttcttcaagaaatcctgcactgtttatgtt
cagatccttgcctcagggtctgcttcgagagctgtactaacacacgcagg
ctcacttagctcatgtcaatctcacaggccttgcctatgaatttattgtc
ttgaggtctttgagcaaaagatatttatgcttgcaaaacaaaattcgtag
cagaattgggattaattcccaattggctggcttcgggccagagctgataa
atcattactgcggttccaactttagatgtgacatctacagattttttttt
ttaatttcatttttttcaaacaatgatgactacagatcctgttaaagtag
gaaagtacaaagatctatttttttgtaataatttctacaactgaagggat
atttacatgaccattgttaaaggtgtttgttttgttttttaacaggccag
aaggctggagtgtgctagagtagaggccttgtctcatgtagtagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122270694_122271808
seq2: B6Ng01-210E15.b_45_1152 (reverse)

seq1  AGAAACACCACAGTATCTTGCATGAACTTGTACATTTTCAG-TCTTCAAG  49
      ||||||  | |||||||| ||||||||||||||  | |||| ||||| ||
seq2  AGAAACCACCCAGTATCTGGCATGAACTTGTACCATGTCAGTTCTTC-AG  49

seq1  CCTTTCTGACAAGCACAACTAGACATATTAAATACACACACACACACACA  99
      |||||||||| ||| | ||||| | |||||||||||||||||||||||||
seq2  CCTTTCTGAC-AGC-CCACTAG-CCTATTAAATACACACACACACACACA  96

seq1  CACACACAAAACTTTCTTCAGCACAATTCTTAAAGACTACAGTTATCTAT  149
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CACACAC-AAACTTTCTTCAGCACAATTC-TAAAGACTACAGTTATCTAT  144

seq1  TGTAAAAAAAAAAAAAAAAATGCTAGCTAAGAGCCAATCACTTGGAAACC  199
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT--AAAAAAAAAAAAAAATGCTAGCTAAGAGCCAATCACTTGGAAACC  192

seq1  TGAACATTTAAAAAGTTCATCTTATACTGCAAAGTCTTTCAATCGAGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTAAAAAGTTCATCTTATACTGCAAAGTCTTTCAATCGAGCAT  242

seq1  ATCAAGTAAACAAGACTATAGTGTCTATGTGGACACCTTGTTTATGTATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTAAACAAGACTATAGTGTCTATGTGGACACCTTGTTTATGTATA  292

seq1  ACAGAACCTTTTAAAAAATCCACATTATAAAGGACCTTAGGGAATTTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACCTTTTAAAAAATCCACATTATAAAGGACCTTAGGGAATTTTAA  342

seq1  GTAAACAGTATGCAGTATGTTTTCTAAGTCTGTTCTATAAGGTTTTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAGTATGCAGTATGTTTTCTAAGTCTGTTCTATAAGGTTTTCTTT  392

seq1  TTCTTCTGCAGTTAGAAGCGTACAGAATTACTGGACTACTGAGTTAGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGCAGTTAGAAGCGTACAGAATTACTGGACTACTGAGTTAGAAG  442

seq1  AAATACTTCCTATAAAGTAGTCATTGCTCTTCTGTATTCATATGTTAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTCCTATAAAGTAGTCATTGCTCTTCTGTATTCATATGTTAAAA  492

seq1  AAAGGAGGGCCAGAGAAATCCAGTCCATTAAAACATTCAAAAACCACAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGGGCCAGAGAAATCCAGTCCATTAAAACATTCAAAAACCACAAT  542

seq1  CTTAGTTCTCTCCTCTCAAGCAAATAGTTTCCCAAGATAACTGTTTCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTCTCTCCTCTCAAGCAAATAGTTTCCCAAGATAACTGTTTCCTT  592

seq1  ATTCTCCAAACCCCACTTACTGGATAAGTATCTCTAGTATTTACCAGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCAAACCCCACTTACTGGATAAGTATCTCTAGTATTTACCAGGAT  642

seq1  ATGAAGACTAAAGAATTTGTCCCACTATTTACATAAGGAAAAAGGAAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACTAAAGAATTTGTCCCACTATTTACATAAGGAAAAAGGAAAAT  692

seq1  GAAATGAGCTCAATCCCTTATATTTCTTAGTTATTATACAACAAAAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGCTCAATCCCTTATATTTCTTAGTTATTATACAACAAAAAAAA  742

seq1  TTGGCAGATTATGAATAATAGCTCACCTACTACACAGCCCACAGATTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGATTATGAATAATAGCTCACCTACTACACAGCCCACAGATTGAG  792

seq1  ACCTGGACACAGCCTCCAGGAGCAGGTGTGGGGGGACGGGGGACGGCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACACAGCCTCCAGGAGCAGGTGTGGGGGGACGGGGGACGGCTTG  842

seq1  GTGGGCAATGGCACTGCTGCTAAACCTAATGCACTGAGAATCATGGGACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAATGGCACTGCTGCTAAACCTAATGCACTGAGAATCATGGGACC  892

seq1  AAGATGTGACGCTTCATGGGGCTTAGGGCTAAGTCCGTCTGTGCGTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGACGCTTCATGGGGCTTAGGGCTAAGTCCGTCTGTGCGTTTTT  942

seq1  CATTAAACATGAAAACACTGTTACTCACATTATCCATCTGTTTCCAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACATGAAAACACTGTTACTCACATTATCCATCTGTTTCCAACAC  992

seq1  ATGTCAAGGTATTGTTGAGCTTTTCGTCCTTCTTGGAGATGCTGAAGATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAGGTATTGTTGAGCTTTTCGTCCTTCTTGGAGATGCTGAAGATT  1042

seq1  ATAACCATCAGCAAACAAACAGAACAAACAAACAAAAATAATTACATTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATCAGCAAACAAACAGAACAAACAAACAAAAATAATTACATTTA  1092

seq1  TATACAAAGGGAATTC  1115
      ||||||||||||||||
seq2  TATACAAAGGGAATTC  1108

seq1: chr3_122083067_122084173
seq2: B6Ng01-210E15.g_64_1159

seq1  GAATTCAGCTTCTATGTTGTAATGCAGAAAGGATAAATGCCACATTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCTATGTTGTAATGCAGAAAGGATAAATGCCACATTACTG  50

seq1  GTGTGGTCCTCCACGTGTTCATGCATCCAAATACTTGGATCCCAACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTCCTCCACGTGTTCATGCATCCAAATACTTGGATCCCAACTGCA  100

seq1  GGTAGTATCTTGGGATGTCATGAAACCTTAGGGAGGCAAAGCACAGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTATCTTGGGATGTCATGAAACCTTAGGGAGGCAAAGCACAGCTAG  150

seq1  AGGAAGTGAGTCCTGTGAGGGGCAGGCCTGAAGGTACACAGTCTGGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGAGTCCTGTGAGGGGCAGGCCTGAAGGTACACAGTCTGGCCAC  200

seq1  TTCCTGACCTGCCTGATCCACGAAGCTATCAGGAAGTAAGGAGTCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACCTGCCTGATCCACGAAGCTATCAGGAAGTAAGGAGTCTCAGC  250

seq1  CATACATAGGTTCCTATTGCCAGGATGATGGCTGTGGTCACAGCCATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAGGTTCCTATTGCCAGGATGATGGCTGTGGTCACAGCCATGAG  300

seq1  CTGAGCTCCTCCCTCAGCCATACCTTCCTCATCAAGATGGTCTGTACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCCTCCCTCAGCCATACCTTCCTCATCAAGATGGTCTGTACCCT  350

seq1  TACGACAAAACAAAAACAAGTCCTTCCTCCCTTAAGTCTCTGCTCGTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACAAAACAAAAACAAGTCCTTCCTCCCTTAAGTCTCTGCTCGTCAG  400

seq1  ATATTTAGTCACAGCAAGGACAGAAGAGTAGTGAGGAAAGACACCGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTCACAGCAAGGACAGAAGAGTAGTGAGGAAAGACACCGGTGG  450

seq1  ACAGACTGCAGCCATCCCACCTTAGGCAGGGTATGCTCTGCAGAGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGCAGCCATCCCACCTTAGGCAGGGTATGCTCTGCAGAGTCTCT  500

seq1  CGGAGGGAGCGTGTACAATTGAAGCCAAGAGTCTCATCGTGGCCACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGGAGCGTGTACAATTGAAGCCAAGAGTCTCATCGTGGCCACTGGC  550

seq1  TCCTAAGCCACCTTTACTGGCCCTCCTCTCACGTAATGCCTGCTGCCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCCACCTTTACTGGCCCTCCTCTCACGTAATGCCTGCTGCCGGC  600

seq1  CCATTCTCTAGAAAATCATCTTCTTCAAGAAATCCTGCACTGTTTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCTAGAAAATCATCTTCTTCAAGAAATCCTGCACTGTTTATGTT  650

seq1  CAGATCCTTGCCTCAGGGTCTGCTTCGAGAGCTGTACTAACACACGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTTGCCTCAGGGTCTGCTTCGAGAGCTGTACTAACACACGCAGG  700

seq1  CTCACTTAGCTCATGTCAATCTCACAGGCCTTGCCTATGAATTTATTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTAGCTCATGTCAATCTCACAGGCCTTGCCTATGAATTTATTGTC  750

seq1  TTGAGGTCTTTGAGCAAAAGATATTTATGCTTGCAAAACAAAATTCGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCTTTGAGCAAAAGATATTTATGCTTGCAAAACAAAATTCGTAG  800

seq1  CAGAATTGGGATTAATTCCCAATTGGCTGGCTTCGGGCCAGAGCTGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGGGATTAATTCCCAATTGGCTGGCTTCGGGCCAGAGCTGATAA  850

seq1  ATCATTACTGCGGTTCCAACTTTTAGATGTGACATCTACAGA-TTTTTTT  899
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  ATCATTACTGCGGTTCCAAC-TTTAGATGTGACATCTACAGATTTTTTTT  899

seq1  TTTAATTTCATTTTTTTTCAAACAATGATGACTACAGATCCTGTAAAAGT  949
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  TTTAATTTCA-TTTTTTTCAAACAATGATGACTACAGATCCTGTTAAAGT  948

seq1  AGGAAAGTACAAAAGATCTA-TTTTTTGTAATAATTTCTACAACTGAAGG  998
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  AGGAAAGTAC-AAAGATCTATTTTTTTGTAATAATTTCTACAACTGAAGG  997

seq1  GATATTTACATGACCATTGTTTAAAGGTGTTTTGTTTTTGTTTTTTTAAA  1048
      ||||||||||||||||||| ||||||||||||   |||||||||||  ||
seq2  GATATTTACATGACCATTG-TTAAAGGTGTTT--GTTTTGTTTTTT--AA  1042

seq1  CAGGGCAGAGGGCTGGAGGTGTGGCCTAGAGGTAGAGGGCTTGTCTCATG  1098
      |||| |||| ||||||| |||||  ||||| ||||||| |||||||||||
seq2  CAGGCCAGAAGGCTGGA-GTGTG--CTAGA-GTAGAGGCCTTGTCTCATG  1088

seq1  TTAGTAGCC  1107
       ||||||||
seq2  -TAGTAGCC  1096