BAC Information

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BAC

Clone NameB6Ng01-210G15
Chromosome3 (Build37)
Map Location 118,689,291 - 118,832,077
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210G15.bB6Ng01-210G15.g
ACCGA028757GA028758
length1,0381,000
definitionB6Ng01-210G15.b B6Ng01-210G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,831,042 - 118,832,077)(118,689,291 - 118,690,016)
sequence
gaattctatgatagatgctcttaactgggaacttgcatggcctttttatt
tttctaaatgccatgttaaattttgataaagcaatatattcttgaaattt
gtattgattttgtcaggaaccctcaaagtcatctagtgccctgcaggtta
ctaggatcaacaggaattataattgggttggatgaagacaaataaatatt
gttctagaattaatatgccttcttgtgagaaatcaccctgcttacttaga
gattaataaaggaaaaatctctttaatagcatgtgtctggctctggctaa
gttccaaagaggagcaggccccaaatagcagattttactaacttatatac
atcttagatttatgcacttataatagggtgcaatttttaagtatattgca
ggtctgaatcccaaattacactttcaacaatttcagcagagacaggagac
tggaaatctggatacttaggcagataatttacacagcaaagatattgtca
ggatttatttgtgttgttttgttatttgtttgtatgtttttgtttgtttg
gggagggacggctgatggttttgaggcaggcttcatttctctttgtagcc
ctggctgtcttggaactcactctgtagaccactctgtaggaacttataaa
gatgcacctgcctctgcctcccaagtgatgagagactaaaggattgtata
ctgtgccaccattgcctggctcagaattattcaattacacctgtgttgtg
cttttcaaatagctgtcacccagtgccatcttgcctttcctacagaatta
tgctttccctgacaacagtgcaagtgacttaatgacagacctggacttta
cgttgatgattcacactggcccttgatctccctagatgtctggtctttta
tatggagatggacctactgactggtttaagtcagagttgtctctttgtta
tggaatagagcctaatcagaggtcagtctttggtgaataaacactaatag
aaacattcccagcaactgtggaacttccatttatggta

gaattcaataaaaattaaatcatctacaaaagaatataactagaagtcaa
taacaatagataattggagactcttacatggatattgtagtataagctac
tgatcaaagaatataaccaaaatagacatcacaacttcatagagatcgca
gaaagcaaactacaacaggactcattcaaaaaatagtaatagcaagaaga
tttgtaagagtaaaggactatttttaaacaaaaagaaagatatttactaa
gcaacttaaaacatagaataaaataacgattgaaatagaaatacataaaa
tagatatgattaaagcacaaggagccattgaaaatttaaggttgtttcta
caaaggtaaacagaatcaataaattcttaagactaagaaaaatgatagaa
gatttaaaataaaattcccttaaggccctataatcgatgccaaataaaat
ggccattataaacaattatttgcgtaccatttcaccaccattcaaataac
tatataactcctagaaaagcatttatctcttcagattggttgcttattta
aaccaacaaaaagaaggccataacagaccagtaacaaatagtgcccagaa
ccaatttgcttcagggtgaatttagaaaatatttaatgaacagttaatat
ctacagtcttcatggaattttttctttcaaactcatattaggaggccaga
ctgatcctattgcaaaaagctgaatacatttcacacgcacacacacacac
acacacacacacacacacacacacacacacacacaaaggggaatctatag
gtcatcatacccatgaacatgaatataaaaatcttcagtgaagtattaac
tagaaaagtaaagggatattaaaagtattatataatttatcattaaaaga
cttagaggcgcccagaatctgagtgtcatcaccacgattcataggaaggg
tagcatattcaaataaacaaatctgtcacaaccatgggagctgaatggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118831042_118832077
seq2: B6Ng01-210G15.b_46_1083 (reverse)

seq1  TACCAT-AATTGAAGTT-CACAGTTGCTGGGAATGTTTCTATTAGTGTTT  48
      |||||| ||| |||||| ||||||||||||||||||||||||||||||||
seq2  TACCATAAATGGAAGTTCCACAGTTGCTGGGAATGTTTCTATTAGTGTTT  50

seq1  ATTCACC-AAGACTGACCTCTGATTAGGCTCTATTCCATAACAAAAGAGA  97
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  ATTCACCAAAGACTGACCTCTGATTAGGCTCTATTCCATAAC-AAAGAGA  99

seq1  CAACTCTGACTTAAACCAGTCAGTAGGTCCATCTCCATATAAAAGACCAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGACTTAAACCAGTCAGTAGGTCCATCTCCATATAAAAGACCAG  149

seq1  ACATCTAGGGAGATCCAAGGGCCAGTGTGAATCATCAACGTTAAGTCCAG  197
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  ACATCTAGGGAGAT-CAAGGGCCAGTGTGAATCATCAACGTAAAGTCCAG  198

seq1  GTCTGTCATTAAGTCACTTGCACTGTTGTCAGGGAAAGCATAATTCTGTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCATTAAGTCACTTGCACTGTTGTCAGGGAAAGCATAATTCTGTA  248

seq1  GG-AAGGCAAGATGGCACTGGGTGACAGCTATTTGAAAAGCACAACACAG  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCAAGATGGCACTGGGTGACAGCTATTTGAAAAGCACAACACAG  298

seq1  GTGTAATTGAATAATTCTGAGCCAGGCAATGGTGGCACAGTATACAATCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTGAATAATTCTGAGCCAGGCAATGGTGGCACAGTATACAATCC  348

seq1  TTTAGTCTCTCATCACTTGGGAGGCAGAGGCAGGTGCATCTTTATAAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTCTCATCACTTGGGAGGCAGAGGCAGGTGCATCTTTATAAGTT  398

seq1  CCTACAGAGTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCTACAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGAGTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCTACAAAG  448

seq1  AGAAATGAAGCCTGCCTCAAAACCATCAGCCGTCCCTCCCCAAACAAACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAGCCTGCCTCAAAACCATCAGCCGTCCCTCCCCAAACAAACA  498

seq1  AAAACATACAAACAAATAACAAAACAACACAAATAAATCCTGACAATATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACAAACAAATAACAAAACAACACAAATAAATCCTGACAATATC  548

seq1  TTTGCTGTGTAAATTATCTGCCTAAGTATCCAGATTTCCAGTCTCCTGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGTAAATTATCTGCCTAAGTATCCAGATTTCCAGTCTCCTGTC  598

seq1  TCTGCTGAAATTGTTGAAAGTGTAATTTGGGATTCAGACCTGCAATATAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAAATTGTTGAAAGTGTAATTTGGGATTCAGACCTGCAATATAC  648

seq1  TTAAAAATTGCACCCTATTATAAGTGCATAAATCTAAGATGTATATAAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTGCACCCTATTATAAGTGCATAAATCTAAGATGTATATAAGT  698

seq1  TAGTAAAATCTGCTATTTGGGGCCTGCTCCTCTTTGGAACTTAGCCAGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATCTGCTATTTGGGGCCTGCTCCTCTTTGGAACTTAGCCAGAG  748

seq1  CCAGACACATGCTATTAAAGAGATTTTTCCTTTATTAATCTCTAAGTAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACATGCTATTAAAGAGATTTTTCCTTTATTAATCTCTAAGTAAG  798

seq1  CAGGGTGATTTCTCACAAGAAGGCATATTAATTCTAGAACAATATTTATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGATTTCTCACAAGAAGGCATATTAATTCTAGAACAATATTTATT  848

seq1  TGTCTTCATCCAACCCAATTATAATTCCTGTTGATCCTAGTAACCTGCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATCCAACCCAATTATAATTCCTGTTGATCCTAGTAACCTGCAG  898

seq1  GGCACTAGATGACTTTGAGGGTTCCTGACAAAATCAATACAAATTTCAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAGATGACTTTGAGGGTTCCTGACAAAATCAATACAAATTTCAAG  948

seq1  AATATATTGCTTTATCAAAATTTAACATGGCATTTAGAAAAATAAAAAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTGCTTTATCAAAATTTAACATGGCATTTAGAAAAATAAAAAGG  998

seq1  CCATGCAAGTTCCCAGTTAAGAGCATCTATCATAGAATTC  1036
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAAGTTCCCAGTTAAGAGCATCTATCATAGAATTC  1038


seq1: chr3_118689291_118690016
seq2: B6Ng01-210G15.g_63_788

seq1  GAATTCAATAAAAATTAAATCATCTACAAAAGAATATAACTAGAAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAAATTAAATCATCTACAAAAGAATATAACTAGAAGTCAA  50

seq1  TAACAATAGATAATTGGAGACTCTTACATGGATATTGTAGTATAAGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAGATAATTGGAGACTCTTACATGGATATTGTAGTATAAGCTAC  100

seq1  TGATCAAAGAATATAACCAAAATAGACATCACAACTTCATAGAGATCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAAGAATATAACCAAAATAGACATCACAACTTCATAGAGATCGCA  150

seq1  GAAAGCAAACTACAACAGGACTCATTCAAAAAATAGTAATAGCAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAAACTACAACAGGACTCATTCAAAAAATAGTAATAGCAAGAAGA  200

seq1  TTTGTAAGAGTAAAGGACTATTTTTAAACAAAAAGAAAGATATTTACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAGTAAAGGACTATTTTTAAACAAAAAGAAAGATATTTACTAA  250

seq1  GCAACTTAAAACATAGAATAAAATAACGATTGAAATAGAAATACATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTAAAACATAGAATAAAATAACGATTGAAATAGAAATACATAAAA  300

seq1  TAGATATGATTAAAGCACAAGGAGCCATTGAAAATTTAAGGTTGTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGATTAAAGCACAAGGAGCCATTGAAAATTTAAGGTTGTTTCTA  350

seq1  CAAAGGTAAACAGAATCAATAAATTCTTAAGACTAAGAAAAATGATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTAAACAGAATCAATAAATTCTTAAGACTAAGAAAAATGATAGAA  400

seq1  GATTTAAAATAAAATTCCCTTAAGGCCCTATAATCGATGCCAAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATAAAATTCCCTTAAGGCCCTATAATCGATGCCAAATAAAAT  450

seq1  GGCCATTATAAACAATTATTTGCGTACCATTTCACCACCATTCAAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTATAAACAATTATTTGCGTACCATTTCACCACCATTCAAATAAC  500

seq1  TATATAACTCCTAGAAAAGCATTTATCTCTTCAGATTGGTTGCTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACTCCTAGAAAAGCATTTATCTCTTCAGATTGGTTGCTTATTTA  550

seq1  AACCAACAAAAAGAAGGCCATAACAGACCAGTAACAAATAGTGCCCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACAAAAAGAAGGCCATAACAGACCAGTAACAAATAGTGCCCAGAA  600

seq1  CCAATTTGCTTCAGGGTGAATTTAGAAAATATTTAATGAACAGTTAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGCTTCAGGGTGAATTTAGAAAATATTTAATGAACAGTTAATAT  650

seq1  CTACAGTCTTCATGGAATTTTTTCTTTCAAACTCATATTAGGAGGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTTCATGGAATTTTTTCTTTCAAACTCATATTAGGAGGCCAGA  700

seq1  CTGATCCTATTGCAAAAAGCTGAATA  726
      ||||||||||||||||||||||||||
seq2  CTGATCCTATTGCAAAAAGCTGAATA  726


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