BAC Information

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BAC

Clone NameB6Ng01-210P13
Chromosome3 (Build37)
Map Location 108,101,835 - 108,284,711
singlet/doubletdoublet
Overlap geneSort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik
Upstream geneSlc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5
Downstream gene1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210P13.bB6Ng01-210P13.g
ACCGA029169GA029170
length868850
definitionB6Ng01-210P13.b B6Ng01-210P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,101,835 - 108,102,704)(108,283,865 - 108,284,711)
sequence
gaattcttcccaataagctttctccataaggaaggattgtggagcaagtt
ctcatggataacacggcgtccacatcttcagatacatggctaatcatgta
tctatcagaggggtctaaagaaggagccaggctggctttgaacttgtgat
catccaccctgtaaatgctatgaccacaggcctgtctcaccggacaccta
aggagaccttgttttgatttgaaaactcttaatctaccaatagtttttcg
tagtgccaataatttctccaagcttttaacaactttctctttggaatgtt
aatatataattttaaaaagagccacagtaaatcctcctgggttctaatgt
atccagtctgtttgagcgtgcttgcctttggtccacttagagtgtgaggg
ggaagttagcaaacagcatttgacttagtccccactcttgccactgaccg
gaagtgctaaccttgccatctgctgaaagaaaccttgtctgtcctgcttt
cgattttgtccattgatctatcttctcttctctgtccctaggccagtagc
ggggacaggaaattaataactcttgctggaagctgtgaccatttcgtgtt
catttgctcctaaaagaattaaactggttttctgtctaactggctgaaac
ttttgatgctgtttcctttgaatactggttttggcctgttactagagaaa
cagcgtatttacagagttttaatttttattttattctggtatctttctat
tgcatgtatttggtttaccaaacagcttgtgttctttgtggtgaattaat
ttacctcttcaggggtctaggttagactgagaactgttgtctgtcataac
aggatgtcgccccacgtt
gaattccacagtgtgagcatcacaccagccgtccttgggatcccagagga
gaggccgagggccgtaacggagggggcaggctgagacataagtgattcct
ctttttgtggttgctagatgatgctatacagtggctagtttgcccctatg
acttcatcccaggagccagagcgttccagctttgaggctgtgttttctgg
aaaaccatagaagaatgagcaatcgtcagtctcccttactgccagccccc
tctggtcctgttctgatcgctccattagagatgcttgtagtgcatatgat
gcacggatcatatgtggaggatcagggaagagtgggagagggttaaaaac
acaaagctacaaaaggcaagttagtgatgcccatttttgtgatgaattaa
cacctaccttatgcctttttgaaggttgagctaaatagaggcaataacgt
cctctattggagaaccacagctttctcggtgtggtccaaagtgtccaagc
ccgtgcttgttagaaacatcgccataacaggtacagaaaacagcttggat
ctgggtctgctgctggcttcctggactcctggcttctagggagggatggg
catttggtccccagggccttggtgtctgggctcaagctttgatcgtctat
accattctttcttcctaggggtggctttacacctccgagtgtttcccctg
caagcctggcacatacgctgccaagcagggctcccctttctgcaagcttt
gtccagccaactactactcaaacaaaggagaaacgtcctgcccatccgtg
tgatgctgacaaatactcaggtgatgtttctgagggttagggtgtggggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_108101835_108102704
seq2: B6Ng01-210P13.b_47_914

seq1  GAATTCTTCCCAATAAGCTTTCTCCATAAGGAAGGATTGTGGAGCAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCAATAAGCTTTCTCCATAAGGAAGGATTGTGGAGCAAGTT  50

seq1  CTCATGGATAACACGGCGTCCACATCTTCAGATACATGGCTAATCATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGATAACACGGCGTCCACATCTTCAGATACATGGCTAATCATGTA  100

seq1  TCTATCAGAGGGGTCTAAAGAAGGAGCCAGGCTGGCTTTGAACTTGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGAGGGGTCTAAAGAAGGAGCCAGGCTGGCTTTGAACTTGTGAT  150

seq1  CATCCACCCTGTAAATGCTATGACCACAGGCCTGTCTCACCGGACACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCCTGTAAATGCTATGACCACAGGCCTGTCTCACCGGACACCTA  200

seq1  AGGAGACCTTGTTTTGATTTGAAAACTCTTAATCTACCAATAGTTTTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCTTGTTTTGATTTGAAAACTCTTAATCTACCAATAGTTTTTCG  250

seq1  TAGTGCCAATAATTTCTCCAAGCTTTTAACAACTTTCTCTTTGGAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCAATAATTTCTCCAAGCTTTTAACAACTTTCTCTTTGGAATGTT  300

seq1  AATATATAATTTTAAAAAGAGCCACAGTAAATCCTCCTGGGTTCTAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAATTTTAAAAAGAGCCACAGTAAATCCTCCTGGGTTCTAATGT  350

seq1  ATCCAGTCTGTTTGAGCGTGCTTGCCTTTGGTCCACTTAGAGTGTGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCTGTTTGAGCGTGCTTGCCTTTGGTCCACTTAGAGTGTGAGGG  400

seq1  GGAAGTTAGCAAACAGCATTTGACTTAGTCCCCACTCTTGCCACTGACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTAGCAAACAGCATTTGACTTAGTCCCCACTCTTGCCACTGACCG  450

seq1  GAAGTGCTAACCTTGCCATCTGCTGAAAGAAACCTTGTCTGTCCTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTAACCTTGCCATCTGCTGAAAGAAACCTTGTCTGTCCTGCTTT  500

seq1  CGATTTTGTCCATTGATCTATCTTCTCTTCTCTGTCCCTAGGCCAGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTGTCCATTGATCTATCTTCTCTTCTCTGTCCCTAGGCCAGTAGC  550

seq1  GGGGACAGGAAATTAATAACTCTTGCTGGAAGCTGTGACCATTTCGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGGAAATTAATAACTCTTGCTGGAAGCTGTGACCATTTCGTGTT  600

seq1  CATTTGCTCCTAAAAGAATTAAACTGGTTTTCTGTCTAACTGGCTGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTCCTAAAAGAATTAAACTGGTTTTCTGTCTAACTGGCTGAAAC  650

seq1  TTTTGATGCTGTTTCCTTTGAATACTGGTTTTGGCCTGTTACTAGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGCTGTTTCCTTTGAATACTGGTTTTGGCCTGTTACTAGAGAAA  700

seq1  CAGCGTATTTACAGAGTTTTAATTTTTTTTTTTATTCTGGTATCTTTCTA  750
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  CAGCGTATTTACAGAGTTTTAA-TTTTTATTTTATTCTGGTATCTTTCTA  749

seq1  TTGCATGTATTTGGTTTACCAAACAGCTTTGTGTTCTTTGTGGTGAA-TA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TTGCATGTATTTGGTTTACCAAACAGC-TTGTGTTCTTTGTGGTGAATTA  798

seq1  ATTTACCTCTTCAGGGGTCTAGGTTAGACTGAGAACCTGTTGTCTGTCAG  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  ATTTACCTCTTCAGGGGTCTAGGTTAGACTGAGAA-CTGTTGTCTGTCAT  847

seq1  AACAGGATGTCGCCCCACGTT  870
      |||||||||||||||||||||
seq2  AACAGGATGTCGCCCCACGTT  868

seq1: chr3_108283865_108284711
seq2: B6Ng01-210P13.g_68_917 (reverse)

seq1  CCCCCACACCCT-ACCCTCAGAAACATCACCTGAGTATTTGTCAGCATCA  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCCCACACCCTAACCCTCAGAAACATCACCTGAGTATTTGTCAGCATCA  50

seq1  CACGGAT-GGCAGGACGTTTCTCCTTTGTTTGAGTAGTAGTTGGCTGGAC  98
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATGGGCAGGACGTTTCTCCTTTGTTTGAGTAGTAGTTGGCTGGAC  100

seq1  AAAGCTTGCAGAAAGGGGAGCCCTGCTTGGCAGCGTATGTGCCAGGCTTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGCAGAAAGGGGAGCCCTGCTTGGCAGCGTATGTGCCAGGCTTG  150

seq1  CAGGGGAAACACTCGGAGGTGT-AAGCCACCCCTAGGAAGAAAGAATGGT  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGGGGAAACACTCGGAGGTGTAAAGCCACCCCTAGGAAGAAAGAATGGT  200

seq1  ATAGACGATCAAAGCTTGAGCCCAGACACCAAGGCCCTGGGGACCAAATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACGATCAAAGCTTGAGCCCAGACACCAAGGCCCTGGGGACCAAATG  250

seq1  CCCATCCCTCCCTAGAAGCCAGGAGTCCAGGAAGCCAGCAGCAGACCCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCTCCCTAGAAGCCAGGAGTCCAGGAAGCCAGCAGCAGACCCAG  300

seq1  ATCCAAGCTGTTTTCTGTACCTGTTATGGCGATGTTTCTAACAAGCACGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCTGTTTTCTGTACCTGTTATGGCGATGTTTCTAACAAGCACGG  350

seq1  GCTTGGACACTTTGGACCACACCGAGAAAGCTGTGGTTCTCCAATAGAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACACTTTGGACCACACCGAGAAAGCTGTGGTTCTCCAATAGAGG  400

seq1  ACGTTATTGCCTCTATTTAGCTCAACCTTCAAAAAGGCATAAGGTAGGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTATTGCCTCTATTTAGCTCAACCTTCAAAAAGGCATAAGGTAGGTG  450

seq1  TTAATTCATCACAAAAATGGGCATCACTAACTTGCCTTTTGTAGCTTTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCATCACAAAAATGGGCATCACTAACTTGCCTTTTGTAGCTTTGT  500

seq1  GTTTTTAACCCTCTCCCACTCTTCCCTGATCCTCCACATATGATCCGTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAACCCTCTCCCACTCTTCCCTGATCCTCCACATATGATCCGTGC  550

seq1  ATCATATGCACTACAAGCATCTCTAATGGAGCGATCAGAACAGGACCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGCACTACAAGCATCTCTAATGGAGCGATCAGAACAGGACCAGA  600

seq1  GGGGGCTGGCAGTAAGGGAGACTGACGATTGCTCATTCTTCTATGGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGGCAGTAAGGGAGACTGACGATTGCTCATTCTTCTATGGTTTT  650

seq1  CCAGAAAACACAGCCTCAAAGCTGGAACGCTCTGGCTCCTGGGATGAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAACACAGCCTCAAAGCTGGAACGCTCTGGCTCCTGGGATGAAGT  700

seq1  CATAGGGGCAAACTAGCCACTGTATAGCATCATCTAGCAACCACAAAAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGGCAAACTAGCCACTGTATAGCATCATCTAGCAACCACAAAAAG  750

seq1  AGGAATCACTTATGTCTCAGCCTGCCCCCTCCGTTACGGCCCTCGGCCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCACTTATGTCTCAGCCTGCCCCCTCCGTTACGGCCCTCGGCCTC  800

seq1  TCCTCTGGGATCCCAAGGACGGCTGGTGTGATGCTCACACTGTGGAATTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGGGATCCCAAGGACGGCTGGTGTGATGCTCACACTGTGGAATTC  850