BAC Information

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BAC

Clone NameB6Ng01-210P16
Chromosome3 (Build37)
Map Location 76,410,162 - 76,575,901
singlet/doubletdoublet
Overlap geneFstl5
Upstream geneSerpini1, Golph4
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210P16.bB6Ng01-210P16.g
ACCGA029175GA029176
length1,1671,159
definitionB6Ng01-210P16.b B6Ng01-210P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,410,162 - 76,411,410)(76,574,754 - 76,575,901)
sequence
gaattctcagttattattaaaattaatgatgtgtgtctgtgtatatttaa
agatatacacagtgttaggaaaactagtgtatatgtactggttctctaaa
attacatttaaaactttcaaaatatattatagaaaaaatccaaaaataat
gttttgaagatatcacaaataaaattaatgaatatttatttgtattttag
aattatgaaatatttccagtgataaccatagaaaacaatttactcttctt
agactttttttgatggtgttgagataattgtattccttttgagtgtctct
atttctaaaacatgcattaagcttgttttatatataactgtgtgcttaat
attcttttaattaatcattttatttgtttatatttcaagtgacatcccct
ttcacagtttctcttccacaacaccccccccatcctatctgctctctcct
ccctccattgcctctatgagggtgctccactcacctactcctgcctcact
gctctagcatctcccctacactggagcatcaagcctccacaggaccaagg
gcctcccctcacattgatgccagataaggcagtcctctgatacataagta
tctggagtcatggatacttccttgtatgtgttttggttggtagtgtagtc
cctggtagctctgggtggtctggttagatgatagtgttcttcttatgggg
ttgcaatccccttcaactccatcaatccttctgctatatctcccgatggg
gtctctgggctcagtccaatggttggctgtaagtatctgagtattaatca
ggtgctgttagaacttctcagggaacagccataccaggctcctgtcagca
agtgattcttgtcaccagtaacagtaccggggttttggtgtctgcagatg
ggatggatcccttaggtagggtggcctctggatggcctttcctcatttct
ctgctcctttttctatttttaaaaagtaacatcacaatttgttaataatt
ttcttaagaagtcctctgaaaggaattcattcgattataatataaattac
caagattaaagataacattgtatcttttcatacagcatgtagcattgaga
gtaattgaattcctggctttcagttttggctagtccacctattcatggtt
atttttattaaccatgt

gaattctggcctagtacaaagcttatcaactatttctcagtacatttcag
tccttttagggcatttcttttgtgaatgttcaccttcttttcattccatt
atgaaaatgggttgaaagggatttaggggcatgcttattctgttgtggtc
tcaagtccctgcctgagtgggaattaggtacttagagaagaatgtgagca
catgaagcacacagactagaacctgtatgccctgaagcctgtctcttaca
gggcttgccttacataaaggcggggaaggaaaagcaggataataagtaac
aggatcctgagagggtgtctgctttactctttgccttcaaacaggagagt
attgatgttttgcagaacagatatattctcatgatcatcaaaaggtataa
cattcaagattcttctctgcaaactcacacagcctgctaggatgctgcac
agctgttgtttcctgatgcttctggctagaatgtttctcttggatggttt
ctgttacttgtaagtgctcacatgagaaaattaaatacttttcaatgagt
tcattattaaattcactgaaaacattaaggacagtctaaccctggcaaca
tacagtataagcaaactatgtggcatgagaaaagaatctttctgcttctg
gcactgaaagcttcaggtttgaaatacatatataatttctctcttataaa
tggtaaatttagcatatataaatatgctaactacctcagttttgtataaa
gattaaataaatagatgcaagtgaaaataccgagagacctacaggacaca
cttcaatttgtgagacctctcttttctcccctttctatagacacagagag
ttttgttcatgtaagctatttattgcatctgaaatgttatgtctttgttt
gctttgtctgtttttaatttttcaactctctatttctcccacgaaaattt
gaaccttaatattcatgtttggttctattttgaaaaggaataactcagag
ccaaaaatgttaaggtagtagtttattcattttgcgatttatgtctgctt
caaatattgaaaggccagctatattacacctctagccttaggaagtaatg
agatgacctatacttccatacagttcaatcatatcgcaattgctcagttt
ggagcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76410162_76411410
seq2: B6Ng01-210P16.b_44_1210

seq1  GAATTCTCAGTTATTATTAAAATTAATGATGTGTGTCTGTGTATATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTATTATTAAAATTAATGATGTGTGTCTGTGTATATTTAA  50

seq1  AGATATACACAGTGTTAGGAAAACTAGTGTATATGTACTGGTTCTCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACACAGTGTTAGGAAAACTAGTGTATATGTACTGGTTCTCTAAA  100

seq1  ATTACATTTAAAACTTTCAAAATATATTATAGAAAAAATCCAAAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTAAAACTTTCAAAATATATTATAGAAAAAATCCAAAAATAAT  150

seq1  GTTTTGAAGATATCACAAATAAAATTAATGAATATTTATTTGTATTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAGATATCACAAATAAAATTAATGAATATTTATTTGTATTTTAG  200

seq1  AATTATGAAATATTTCCAGTGATAACCATAGAAAACAATTTACTCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAAATATTTCCAGTGATAACCATAGAAAACAATTTACTCTTCTT  250

seq1  AGACTTTTTTTGATGGTGTTGAGATAATTGTATTCCTTTTGAGTGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTTTTGATGGTGTTGAGATAATTGTATTCCTTTTGAGTGTCTCT  300

seq1  ATTTCTAAAACATGCATTAAGCTTGTTTTATATATAACTGTGTGCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAAACATGCATTAAGCTTGTTTTATATATAACTGTGTGCTTAAT  350

seq1  ATTCTTTTAATTAATCATTTTATTTGTTTATATTTCAAGTGACATCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTAATTAATCATTTTATTTGTTTATATTTCAAGTGACATCCCCT  400

seq1  TTCACAGTTTCTCTTCCACAACACCCCCCCCATCCTATCTGCTCTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTTTCTCTTCCACAACACCCCCCCCATCCTATCTGCTCTCTCCT  450

seq1  CCCTCCATTGCCTCTATGAGGGTGCTCCACTCACCTACTCCTGCCTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATTGCCTCTATGAGGGTGCTCCACTCACCTACTCCTGCCTCACT  500

seq1  GCTCTAGCATCTCCCCTACACTGGAGCATCAAGCCTCCACAGGACCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCATCTCCCCTACACTGGAGCATCAAGCCTCCACAGGACCAAGG  550

seq1  GCCTCCCCTCACATTGATGCCAGATAAGGCAGTCCTCTGATACATAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCTCACATTGATGCCAGATAAGGCAGTCCTCTGATACATAAGTA  600

seq1  TCTGGAGTCATGGATACTTCCTTGTATGTGTTTTGGTTGGTAGTGTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCATGGATACTTCCTTGTATGTGTTTTGGTTGGTAGTGTAGTC  650

seq1  CCTGGTAGCTCTGGGTGGTCTGGTTAGATGATAGTGTTCTTCTTATGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGCTCTGGGTGGTCTGGTTAGATGATAGTGTTCTTCTTATGGGG  700

seq1  TTGCAATCCCCTTCAACTCCATCAATCCTTCTGCTATATCTCCCGATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATCCCCTTCAACTCCATCAATCCTTCTGCTATATCTCCCGATGGG  750

seq1  GTCTCTGGGCTCAGTCCAATGGTTGGCTGTAAGTATCTGAGTATTAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGCTCAGTCCAATGGTTGGCTGTAAGTATCTGAGTATTAATCA  800

seq1  GGTGCTGTTAGAACTTCTCAGGGAACAGCCATACCAGGCTCCTGTCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTTAGAACTTCTCAGGGAACAGCCATACCAGGCTCCTGTCAGCA  850

seq1  AGTGATTCTTGTCACCAGTAACAGTACCGGGG-TTTGGTGTCTGCAGATG  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTGATTCTTGTCACCAGTAACAGTACCGGGGTTTTGGTGTCTGCAGATG  900

seq1  GGATGGATCCC-TAGGTAGGGTGGCCTCTGGATGGCCTTTCCTTCATTCT  948
      ||||||||||| |||||||||||||||||||||||||||||||   ||||
seq2  GGATGGATCCCTTAGGTAGGGTGGCCTCTGGATGGCCTTTCCTCATTTCT  950

seq1  CTGCTCC-TTTTCTA-TTTTAAAAAGTACAATCACAATTGTTTAATAATT  996
      ||||||| ||||||| ||||||||||||  |||||||||  |||||||||
seq2  CTGCTCCTTTTTCTATTTTTAAAAAGTAACATCACAATTTGTTAATAATT  1000

seq1  TTC-TAAG-AGTCCTCTGAAAAGAAATCATTCAAATATAATATAAATATA  1044
      ||| |||| |||||||||||| ||| |||||| | |||||||||||| ||
seq2  TTCTTAAGAAGTCCTCTGAAAGGAATTCATTCGATTATAATATAAAT-TA  1049

seq1  CAAAGAATAAAGATAACA-TGTATCTTTT-ATACAGGCAGGTAGGCATGA  1092
      | |||| ||||||||||| |||||||||| ||||| ||| ||||   |||
seq2  CCAAGATTAAAGATAACATTGTATCTTTTCATACA-GCATGTAGCATTGA  1098

seq1  GAGGTTAAAATGAGATACTTGCTTTCAGTTTTGTCATGTCCACCTATGTC  1142
      |||    || |||  | || ||||||||||||| |  |||||||||| ||
seq2  GAG---TAATTGAATTCCTGGCTTTCAGTTTTGGCTAGTCCACCTAT-TC  1144

seq1  ATG--TATATTTATTAACAATGTGCAGAAATGTTAGGCGACTACATACAT  1190
      |||  ||| ||||||||| ||||                           
seq2  ATGGTTATTTTTATTAACCATGT---------------------------  1167

seq1  TCTTATTAACCGTGTGCAGATGAAATGTCAAACGATGGTGTGCATTTTAT  1240
                                                        
seq2  --------------------------------------------------  1167

seq1  TAACCATGT  1249
               
seq2  ---------  1167


seq1: chr3_76574754_76575901
seq2: B6Ng01-210P16.g_64_1222 (reverse)

seq1  TTTTGCTTCACAAACTGAGGCATTTGCGATATGATTGACCTGTATTTGAA  50
      |||||||   |||||||| ||| ||||||||||||||| ||||| | |||
seq2  TTTTGCT--CCAAACTGA-GCAATTGCGATATGATTGAACTGTA-TGGAA  46

seq1  GTATAGGTCATCTCATTACTCCCT-AGGCTAGA-GTGTAATAT-GCTGGG  97
      |||||||||||||||||||| ||| |||||||| ||||||||| ||||| 
seq2  GTATAGGTCATCTCATTACTTCCTAAGGCTAGAGGTGTAATATAGCTGGC  96

seq1  CTTTC-ATATTTGAAGCAGACAT-AATCGC-AAATG-ATAAACTA-GACC  142
      ||||| ||||||||||||||||| |||||| ||||| ||||||||  |||
seq2  CTTTCAATATTTGAAGCAGACATAAATCGCAAAATGAATAAACTACTACC  146

seq1  TTAACATTTT--GCTCTGAGTTA-TCCTTTTC-AAATAGAACCAAAACAT  188
      ||||||||||  ||||||||||| |||||||| |||||||||| ||||||
seq2  TTAACATTTTTGGCTCTGAGTTATTCCTTTTCAAAATAGAACC-AAACAT  195

seq1  GAATATTAA-GTTCAAATTTTCGTGGGAGAAATAGAGAGTTGAAAAA-TA  236
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  GAATATTAAGGTTCAAATTTTCGTGGGAGAAATAGAGAGTTGAAAAATTA  245

seq1  AAAACAGACAAAGCAAAACAAAGACATAACATTTCAGATGCAAT-AATAG  285
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AAAACAGACAAAGC-AAACAAAGACATAACATTTCAGATGCAATAAATAG  294

seq1  C-TACATGAACAAAACTCTCTGTGTCTATAGAAAGGGGAGAAAAGAGAGG  334
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATGAACAAAACTCTCTGTGTCTATAGAAAGGGGAGAAAAGAGAGG  344

seq1  TCTCAC-AATTGAAGTGTGTCCTGTAGGTCTCTCGGTATTTTCACTTGCA  383
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAATTGAAGTGTGTCCTGTAGGTCTCTCGGTATTTTCACTTGCA  394

seq1  TCTATTTATTTAATCTTTATACAAAACTGAGGTAGTTAGCATATTTATAT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTATTTAATCTTTATACAAAACTGAGGTAGTTAGCATATTTATAT  444

seq1  ATGCTAAATTTACCATTTATAAGAGAGAAATTATATATGTATTTCAAACC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAATTTACCATTTATAAGAGAGAAATTATATATGTATTTCAAACC  494

seq1  TGAAGCTTTCAGTGCCAGAAGCAGAAAGATTCTTTTCTCATGCCACATAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTTCAGTGCCAGAAGCAGAAAGATTCTTTTCTCATGCCACATAG  544

seq1  TTTGCTTATACTGTATGTTGCCAGGGTTAGACTGTCCTTAATGTTTTCAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATACTGTATGTTGCCAGGGTTAGACTGTCCTTAATGTTTTCAG  594

seq1  TGAATTTAATAATGAACTCATTGAAAAGTATTTAATTTTCTCATGTGAGC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTAATAATGAACTCATTGAAAAGTATTTAATTTTCTCATGTGAGC  644

seq1  ACTTACAAGTAACAGAAACCATCCAAGAGAAACATTCTAGCCAGAAGCAT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAAGTAACAGAAACCATCCAAGAGAAACATTCTAGCCAGAAGCAT  694

seq1  CAGGAAACAACAGCTGTGCAGCATCCTAGCAGGCTGTGTGAGTTTGCAGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACAACAGCTGTGCAGCATCCTAGCAGGCTGTGTGAGTTTGCAGA  744

seq1  GAAGAATCTTGAATGTTATACCTTTTGATGATCATGAGAATATATCTGTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCTTGAATGTTATACCTTTTGATGATCATGAGAATATATCTGTT  794

seq1  CTGCAAAACATCAATACTCTCCTGTTTGAAGGCAAAGAGTAAAGCAGACA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAACATCAATACTCTCCTGTTTGAAGGCAAAGAGTAAAGCAGACA  844

seq1  CCCTCTCAGGATCCTGTTACTTATTATCCTGCTTTTCCTTCCCCGCCTTT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCAGGATCCTGTTACTTATTATCCTGCTTTTCCTTCCCCGCCTTT  894

seq1  ATGTAAGGCAAGCCCTGTAAGAGACAGGCTTCAGGGCATACAGGTTCTAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGCAAGCCCTGTAAGAGACAGGCTTCAGGGCATACAGGTTCTAG  944

seq1  TCTGTGTGCTTCATGTGCTCACATTCTTCTCTAAGTACCTAATTCCCACT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCTTCATGTGCTCACATTCTTCTCTAAGTACCTAATTCCCACT  994

seq1  CAGGCAGGGACTTGAGACCACAACAGAATAAGCATGCCCCTAAATCCCTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGGACTTGAGACCACAACAGAATAAGCATGCCCCTAAATCCCTT  1044

seq1  TCAACCCATTTTCATAATGGAATGAAAAGAAGGTGAACATTCACAAAAGA  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCATTTTCATAATGGAATGAAAAGAAGGTGAACATTCACAAAAGA  1094

seq1  AATGCCCTAAAAGGACTGAAATGTACTGAGAAATAGTTGATAAGCTTTGT  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTAAAAGGACTGAAATGTACTGAGAAATAGTTGATAAGCTTTGT  1144

seq1  ACTAGGCCAGAATTC  1148
      |||||||||||||||
seq2  ACTAGGCCAGAATTC  1159


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