BAC Information

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BAC

Clone NameB6Ng01-211C06
Chromosome3 (Build37)3 (Build37)
Map Location 90,647,435 - 90,647,71490,555,042 - 90,556,103
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneShe, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541
Downstream geneLOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211C06.bB6Ng01-211C06.g
ACCGA029299GA029300
length1,0041,064
definitionB6Ng01-211C06.b B6Ng01-211C06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,647,435 - 90,647,714)(90,555,042 - 90,556,103)
sequence
gaattcctggatcatgttggtgaaaattcctgaggtgatcagcctccatt
ttctagtctattattaataccattccatcaacagagccttgtcttgccac
aattctctccactgcatactgttcatgtgtgatgcaatcattcctgagat
aaggggattgtgtgtcagacactgactgcttttaaatgctaggctggctc
taatttgccacactgtgtggttcctcaacttaggtaagtgagcacagctt
tcctagccaagagcctgcctgtcaattctttctttctctcagctttatga
ctttttttcttggatattttctttatttacatttcaaatattttccccgt
tccaggtcttccccttcagaaacccccatctcattccccctcccctctct
ctatgagggtgttccctacccaccaactcccatctttctgccctggcatt
cctgtacactcgagcatcaaacacagacaggcccatgggtctctcctccc
actgatgtccacaaggccatcatctgccatatatgtggccttggattgct
ccatgtatattctatggttggtggttcagtccctgaaactccaaaagtgt
ctgccctgttgacactgttgctccctccttggggcttcaaacaccctcgg
cttctgcagttccttcttcaactttctccatcagggatggttttagatcc
tttgtcaaagatcaagtgaccataggtgtgggggttcatttctggctctt
taattcttttccattgatctaccctcctatcattgtaccaataccatgca
ggttttatcactattactctgtagtagagcttatcgtcagggatactgat
tccccaagaattttcttttattgttgagaataattttgctaccctaggtt
ttatgttatcccaaataaatttgagaattgctcttttctaactctaagaa
aattgagttagaattttaatggggaatgcaccgaatctgtatattgccat
tttt
gaattcaagtattcttccccagacagcactgcctgggtctgcttcagaaa
aacttttagaggtttagtgttgtattagaattgtttgcagagatcagtga
agaaggcctgggccgagcttgaaaatggctggcatgttgggggaaggcca
tcagctttttgtttatgcagtgccaagggccacatttacaggctaaatat
gggagctcccactcaaacagtaggcatatatccaagatggggcagagtca
cagttgaatcccgaaagatgaaagcagacaaacaagttgctggttgtcat
ttcattttgatttaatgggggagtttgagctgcaagcaagagcagacctg
tctagtgctcatcctactgagaaggataagtctaggaggcagaagcatca
tggaaggcattagcctgaaaaagactttattgctcctcataccacagctc
aacaaataagcctatgtgacacaacattctttgtcgttctggttggacag
gtgcagtgtcttggtcttctgattagttgctttggcagtgtccatggcta
tcaaaggaggcttgggcatatctggaaccctggcgatggccacatgagga
agtattcttgtgactctctttatgtatattaatcattaccctatctatga
gggccaaaaattcttccaagctcaggtgtttatatttatttgtgttgagg
tcatccaccatgtaactcatggcttcctcatactatctccatttctgtag
ttagaagagagacatctgttagtgctgttcatgggcacagaagagaacta
gggaacactgtgagtgatattatggaaaatccagggaatcagtttaaaat
ttgaaatgatggactgagtgtttatggtggagtagatgcttgaagtcatt
actttttttttcaccttactttaaaaaatattttattttattttatgtat
gtaagtacaactgtagctgtacagaatgattgtgagccgtcatatggttg
ttgggaaattgaattttaaggaacctatgcttcgctcctggttctgcctt
gctcctgcagatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90647435_90647714
seq2: B6Ng01-211C06.b_48_354

seq1  GAATTTCTGGACCATGTTGGTGAAAATTCCTGAGGGGATCAGCCTCCATT  50
      ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GAATTCCTGGATCATGTTGGTGAAAATTCCTGAGGTGATCAGCCTCCATT  50

seq1  TTCTAGTCTCTTATTAATAGCATTCCATCAACAGAGCTTTGTCTTGCCAC  100
      ||||||||| ||||||||| ||||||||||||||||| ||||||||||||
seq2  TTCTAGTCTATTATTAATACCATTCCATCAACAGAGCCTTGTCTTGCCAC  100

seq1  AATTCTCTCCACTGTATAGTGTTCATGTGTGATGCAATCAATCCTGAG-T  149
      |||||||||||||| ||| ||||||||||||||||||||| ||||||| |
seq2  AATTCTCTCCACTGCATACTGTTCATGTGTGATGCAATCATTCCTGAGAT  150

seq1  AAGGGGAATGTGTGTCAGCCATTGA-TGCTTTTAAATGCTAGGCCAGCTC  198
      ||||||| |||||||||| || ||| ||||||||||||||||||  ||||
seq2  AAGGGGATTGTGTGTCAGACACTGACTGCTTTTAAATGCTAGGCTGGCTC  200

seq1  TAATTTGCCA-------------------------AAGTGAGCATAGCTT  223
      ||||||||||                         ||||||||| |||||
seq2  TAATTTGCCACACTGTGTGGTTCCTCAACTTAGGTAAGTGAGCACAGCTT  250

seq1  TCCTAGCCAAGAGTCTGCCTGTTACTTCTTTCTTTCTCTCTGCTTCATGA  273
      ||||||||||||| |||||||| | ||||||||||||||| |||| ||||
seq2  TCCTAGCCAAGAGCCTGCCTGTCAATTCTTTCTTTCTCTCAGCTTTATGA  300

seq1  CTTTTTT  280
      |||||||
seq2  CTTTTTT  307

seq1: chr3_90555042_90556103
seq2: B6Ng01-211C06.g_71_1134

seq1  GAATTCAAGTATTCTTCCCCAGACAGCACTGCCTGGGTCTGCTTCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATTCTTCCCCAGACAGCACTGCCTGGGTCTGCTTCAGAAA  50

seq1  AACTTTTAGAGGTTTAGTGTTGTATTAGAATTGTTTGCAGAGATCAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAGAGGTTTAGTGTTGTATTAGAATTGTTTGCAGAGATCAGTGA  100

seq1  AGAAGGCCTGGGCCGAGCTTGAAAATGGCTGGCATGTTGGGGGAAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCTGGGCCGAGCTTGAAAATGGCTGGCATGTTGGGGGAAGGCCA  150

seq1  TCAGCTTTTTGTTTATGCAGTGCCAAGGGCCACATTTACAGGCTAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTTGTTTATGCAGTGCCAAGGGCCACATTTACAGGCTAAATAT  200

seq1  GGGAGCTCCCACTCAAACAGTAGGCATATATCCAAGATGGGGCAGAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTCCCACTCAAACAGTAGGCATATATCCAAGATGGGGCAGAGTCA  250

seq1  CAGTTGAATCCCGAAAGATGAAAGCAGACAAACAAGTTGCTGGTTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAATCCCGAAAGATGAAAGCAGACAAACAAGTTGCTGGTTGTCAT  300

seq1  TTCATTTTGATTTAATGGGGGAGTTTGAGCTGCAAGCAAGAGCAGACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGATTTAATGGGGGAGTTTGAGCTGCAAGCAAGAGCAGACCTG  350

seq1  TCTAGTGCTCATCCTACTGAGAAGGATAAGTCTAGGAGGCAGAAGCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCTCATCCTACTGAGAAGGATAAGTCTAGGAGGCAGAAGCATCA  400

seq1  TGGAAGGCATTAGCCTGAAAAAGACTTTATTGCTCCTCATACCACAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCATTAGCCTGAAAAAGACTTTATTGCTCCTCATACCACAGCTC  450

seq1  AACAAATAAGCCTATGTGACACAACATTCTTTGTCGTTCTGGTTGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAGCCTATGTGACACAACATTCTTTGTCGTTCTGGTTGGACAG  500

seq1  GTGCAGTGTCTTGGTCTTCTGATTAGTTGCTTTGGCAGTGTCCATGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGTCTTGGTCTTCTGATTAGTTGCTTTGGCAGTGTCCATGGCTA  550

seq1  TCAAAGGAGGCTTGGGCATATCTGGAACCCTGGCGATGGCCACATGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAGGCTTGGGCATATCTGGAACCCTGGCGATGGCCACATGAGGA  600

seq1  AGTATTCTTGTGACTCTCTTTATGTATATTAATCATTACCCTATCTATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTTGTGACTCTCTTTATGTATATTAATCATTACCCTATCTATGA  650

seq1  GGGCCAAAAATTCTTCCAAGCTCAGGTGTTTATATTTATTTGTGTTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAAAATTCTTCCAAGCTCAGGTGTTTATATTTATTTGTGTTGAGG  700

seq1  TCATCCACCATGTAACTCATGGCTTCCTCATACTATCTCCATTTCTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACCATGTAACTCATGGCTTCCTCATACTATCTCCATTTCTGTAG  750

seq1  TTAGAAGAGAGACATCTGTTAGTGCTGTTCATGGGCACAGAAGAGAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGAGACATCTGTTAGTGCTGTTCATGGGCACAGAAGAGAACTA  800

seq1  GGGAACACTGTGAGTGATATTATGGAAAATCCAGGGAATCAGTTTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACACTGTGAGTGATATTATGGAAAATCCAGGGAATCAGTTTAAAAT  850

seq1  TTGAAATGATGGACTGAGTGTTTATGGTGGAGTAGATGCTTGAAGTCA-T  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGAAATGATGGACTGAGTGTTTATGGTGGAGTAGATGCTTGAAGTCATT  900

seq1  AC-TTTTTTTTCAACCTACTTTAAAAAATATTT--ATTTATTTTATGTAT  946
      || |||||||||| | |||||||||||||||||   ||||||||||||||
seq2  ACTTTTTTTTTCACCTTACTTTAAAAAATATTTTATTTTATTTTATGTAT  950

seq1  GTAAGTAC-ACTGTAGCTGTACAG-ATGATTGTGAGCCTTCATATGGTTG  994
      |||||||| ||||||||||||||| ||||||||||||| |||||||||||
seq2  GTAAGTACAACTGTAGCTGTACAGAATGATTGTGAGCCGTCATATGGTTG  1000

seq1  TTGGG-AATTGAATTTTA--GGACCTATGC-TCGCT-CTGG-TCTGCCCT  1038
      ||||| ||||||||||||  | |||||||| ||||| |||| |||||| |
seq2  TTGGGAAATTGAATTTTAAGGAACCTATGCTTCGCTCCTGGTTCTGCCTT  1050

seq1  GCTCCCTCCAGTCAATTCAGATCA  1062
      |||||          | |||||||
seq2  GCTCC----------TGCAGATCA  1064