BAC Information

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BAC

Clone NameB6Ng01-211E02
Chromosome3 (Build37)
Map Location 124,298,130 - 124,434,226
singlet/doubletdoublet
Overlap genenone
Upstream geneNdst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211E02.bB6Ng01-211E02.g
ACCGA029375GA029376
length1,2001,051
definitionB6Ng01-211E02.b B6Ng01-211E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,433,026 - 124,434,226)(124,298,130 - 124,299,185)
sequence
gaattcagaggattcaaactgaaactgacacacatgcacacatacaaaga
caaagacgaacacacacacactcacacacacacactcacacacacacctg
atctcatggaaagtctctgactaatacaataaacaaacaaaacaaaacaa
aacaaaaagcaaaacaaccaaacaataaaaccaagaaaagagaagtgttc
cctgaagactagatttcatagcaccattatgagactaataaagaacaata
agggaaatatattatagtttgataagaaatgtttatactgttaaggagct
ggagtttgctattatgatattccttgtaacagtgatcaattttcagaaga
aatgaaaacttcaggaaaaaagtgacttaaaaagcagttgaagaaactga
tatttagtaacttcaaatcctttagccaaaattacaaatgatgctgcctg
tcaatttcaggtgacttttgtctgcatacaactgtgaattactgttgttt
tcaccatttatacagttttattaattctattattctgatagatttgcttc
aaatagctttaaagtaagaaagacaaatgctatcacagtgccccacttga
ttgactcttatatcctgattttttttagtttattaaccccattcatattg
tatgcactcttaaatactgaactacaaatatatgtatcaatatgtgtaat
agtttcgaatttttacgatggtttatacattgaagctacatgcatagtat
tgatattgtttaattatttaagtatgttttatgatactatattttatatg
tatcaacagtatattaatatttaatgccataaagcactttttatatgtac
ctaagtagcagcataaatggagacattgttagtagagcattgatttccag
tggatgagtgcacataagcaataatgcattagacaagggacaggttgttt
ttctgcattatctgtgagtgtcaggcaaggaagacatacagcaatgtaat
acatcaactcaagtgacaatagaaatagaaagctattgattttaataaaa
atctttaaaatatagaatgaatccttgtcctcatgaagaagaaaagactg
cttatttattcaatgcctgggcaattgtaatatgaattaattgtcaattt
aaatggacatagattccatcacgtggagagttagaaaagacaaatggtgc


gaattctatctgacttagaaaaagtattgttagcttcggtttcttctttc
tagcgatgctgaggggagaaatgtgctacagaacaacctaaacaccattg
gcagtgtatgccaggtgagctgacagagatttcatcttgagctcacacaa
aggttcttctccccatgattttaacagcgctccagtcggtggctatgcca
gagatctgtagcaaacaggagtcattcaagacggtctttggaaatgcata
aaatgaaacaaaacagaagtgacacaaaactgcaatatttagcagctatg
ctgtagaaaaaaagaaaacaaaaacaacaacaaaaaaaacaaaacaaaac
aaaacaacaacaacaacaacaaaaaaaaccattaacagtacaagtcttag
atgacatagcccaaaacttgcctggaaactcctgatgccctcagtcccca
ttccatatacatcatatttaactttcaacactaggtaatttgttgatata
atagcaaacaaaaataaaagggatgaagcctgaagtcacaaagtgtgcat
caggtcaagctcaggcacgacaaagatattccaaattttaagaatagtaa
aaaaaaaaaaaagctcatgtgttataatagaaaatatggaacctgtcctt
cttattccaagggccatcactgacacatctgtagccataggtagactgac
aatgaaggaaaaaaaaaacagcaataaaagatttatttaatcaaaatgtg
tataccataagaatcagcagccagcgtaagtcaagagccaaagacactgg
ggaagaagcgcctggaccacgtgtaggattaagattgaacaacacagggt
gtgccttagactctagagaaaccggctgggactgcctgggcctgattttt
cctggcatccccctgtagtgtttctcttgagcatggcctgcttgtggaat
gagacttttttttttttttttaaatctatctgacagatagctcagacatt
ttattatactgctgcttcatagaaagtagaacgagagttatgtaatattt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124433026_124434226
seq2: B6Ng01-211E02.b_50_1249 (reverse)

seq1  GCACCATTTGTCTTCT-TAACTCTCAACGCTGAAAGTGG-ATC-ATGT-C  46
      |||||||||||||| | |||||||| ||| |||   ||| ||| |||| |
seq2  GCACCATTTGTCTTTTCTAACTCTCCACG-TGA---TGGAATCTATGTCC  46

seq1  ATATAAA-TGACAAATAAATCATA-TACAAT--GCCAGGCATGGAATAAA  92
      || |||| |||||| ||| ||||| ||||||   |||||||| |||||||
seq2  ATTTAAATTGACAATTAATTCATATTACAATTGCCCAGGCATTGAATAAA  96

seq1  TAAGCATGTCTTT--CTCTTCATGA-GACAAGGATTCATTCTATATTTTA  139
      |||||| ||||||   ||||||||| ||||||||||||||||||||||||
seq2  TAAGCA-GTCTTTTCTTCTTCATGAGGACAAGGATTCATTCTATATTTTA  145

seq1  AAAGATGTTA-TAAAATCAATAGCTTTCTTATTTCTATTGTCACTTTGAG  188
      ||   | ||| ||||||||||||||||| ||||||||||||||| |||||
seq2  AAGATTTTTATTAAAATCAATAGCTTTC-TATTTCTATTGTCAC-TTGAG  193

seq1  TTGATGTATTAACATTGCTGTTATTGTCTTCCTTGCCCTGACACCTCACA  238
      |||||||||| ||||||||||   ||||||||||| ||||||| ||||||
seq2  TTGATGTATT-ACATTGCTGT--ATGTCTTCCTTG-CCTGACA-CTCACA  238

seq1  GATAATGCAGAAAAACAACCTGTCCCTTGTCTAATGCATTATTGCTTATG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGCAGAAAAACAACCTGTCCCTTGTCTAATGCATTATTGCTTATG  288

seq1  TGCACTCATCCACTGGAAATCAATGCTCTACTAACAATGTCTCCATTTAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCATCCACTGGAAATCAATGCTCTACTAACAATGTCTCCATTTAT  338

seq1  GCCTGCTACTTAGGTACATATAAAAAGTGCTTTATGGCATTAAATATTAA  388
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CTGCTACTTAGGTACATATAAAAAGTGCTTTATGGCATTAAATATTAA  387

seq1  TATACTGTTGATACATATAAAATATAGTATCATAAAACATACTTAAATAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTTGATACATATAAAATATAGTATCATAAAACATACTTAAATAA  437

seq1  TTAAACAATATCAATACTATGCATGTAGCTTCAATGTATAAACCATCGTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATATCAATACTATGCATGTAGCTTCAATGTATAAACCATCGTA  487

seq1  AAAATTCGAAACTATTACACATATTGATACATATATTTGTAGTTCAGTAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCGAAACTATTACACATATTGATACATATATTTGTAGTTCAGTAT  537

seq1  TTAAGAGTGCATACAATATGAATGGGGTTAATAAACTAAAAAAAATCAGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTGCATACAATATGAATGGGGTTAATAAACTAAAAAAAATCAGG  587

seq1  ATATAAGAGTCAATCAAGTGGGGCACTGTGATAGCATTTGTCTTTCTTAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAGTCAATCAAGTGGGGCACTGTGATAGCATTTGTCTTTCTTAC  637

seq1  TTTAAAGCTATTTGAAGCAAATCTATCAGAATAATAGAATTAATAAAACT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCTATTTGAAGCAAATCTATCAGAATAATAGAATTAATAAAACT  687

seq1  GTATAAATGGTGAAAACAACAGTAATTCACAGTTGTATGCAGACAAAAGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATGGTGAAAACAACAGTAATTCACAGTTGTATGCAGACAAAAGT  737

seq1  CACCTGAAATTGACAGGCAGCATCATTTGTAATTTTGGCTAAAGGATTTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAATTGACAGGCAGCATCATTTGTAATTTTGGCTAAAGGATTTG  787

seq1  AAGTTACTAAATATCAGTTTCTTCAACTGCTTTTTAAGTCACTTTTTTCC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTAAATATCAGTTTCTTCAACTGCTTTTTAAGTCACTTTTTTCC  837

seq1  TGAAGTTTTCATTTCTTCTGAAAATTGATCACTGTTACAAGGAATATCAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTTCATTTCTTCTGAAAATTGATCACTGTTACAAGGAATATCAT  887

seq1  AATAGCAAACTCCAGCTCCTTAACAGTATAAACATTTCTTATCAAACTAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAACTCCAGCTCCTTAACAGTATAAACATTTCTTATCAAACTAT  937

seq1  AATATATTTCCCTTATTGTTCTTTATTAGTCTCATAATGGTGCTATGAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTCCCTTATTGTTCTTTATTAGTCTCATAATGGTGCTATGAAA  987

seq1  TCTAGTCTTCAGGGAACACTTCTCTTTTCTTGGTTTTATTGTTTGGTTGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTTCAGGGAACACTTCTCTTTTCTTGGTTTTATTGTTTGGTTGT  1037

seq1  TTTGCTTTTTGTTTTGTTTTGTTTTGTTTGTTTATTGTATTAGTCAGAGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTTGTTTTGTTTTGTTTTGTTTGTTTATTGTATTAGTCAGAGA  1087

seq1  CTTTCCATGAGATCAGGTGTGTGTGTGAGTGTGTGTGTGTGAGTGTGTGT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGAGATCAGGTGTGTGTGTGAGTGTGTGTGTGTGAGTGTGTGT  1137

seq1  GTGTTCGTCTTTGTCTTTGTATGTGTGCATGTGTGTCAGTTTCAGTTTGA  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGTCTTTGTCTTTGTATGTGTGCATGTGTGTCAGTTTCAGTTTGA  1187

seq1  ATCCTCTGAATTC  1201
      |||||||||||||
seq2  ATCCTCTGAATTC  1200


seq1: chr3_124298130_124299185
seq2: B6Ng01-211E02.g_67_1117

seq1  GAATTCTATCTGACTTAGAAAAAGTATTGTTAGCTTCGGTTTCTTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTGACTTAGAAAAAGTATTGTTAGCTTCGGTTTCTTCTTTC  50

seq1  TAGCGATGCTGAGGGGAGAAATGTGCTACAGAACAACCTAAACACCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGATGCTGAGGGGAGAAATGTGCTACAGAACAACCTAAACACCATTG  100

seq1  GCAGTGTATGCCAGGTGAGCTGACAGAGATTTCATCTTGAGCTCACACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTATGCCAGGTGAGCTGACAGAGATTTCATCTTGAGCTCACACAA  150

seq1  AGGTTCTTCTCCCCATGATTTTAACAGCGCTCCAGTCGGTGGCTATGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTCTCCCCATGATTTTAACAGCGCTCCAGTCGGTGGCTATGCCA  200

seq1  GAGATCTGTAGCAAACAGGAGTCATTCAAGACGGTCTTTGGAAATGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGTAGCAAACAGGAGTCATTCAAGACGGTCTTTGGAAATGCATA  250

seq1  AAATGAAACAAAACAGAAGTGACACAAAACTGCAATATTTAGCAGCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAACAAAACAGAAGTGACACAAAACTGCAATATTTAGCAGCTATG  300

seq1  CTGTAGAAAAAAAGAAAACAAAAACAACAACAAAAAAAACAAAACAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAAAAAAGAAAACAAAAACAACAACAAAAAAAACAAAACAAAAC  350

seq1  AAAACAACAACAACAACAACAAAAAAAACCATTAACAGTACAAGTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAACAACAACAAAAAAAACCATTAACAGTACAAGTCTTAG  400

seq1  ATGACATAGCCCAAAACTTGCCTGGAAACTCCTGATGCCCTCAGTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATAGCCCAAAACTTGCCTGGAAACTCCTGATGCCCTCAGTCCCCA  450

seq1  TTCCATATACATCATATTTAACTTTCAACACTAGGTAATTTGTTGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATACATCATATTTAACTTTCAACACTAGGTAATTTGTTGATATA  500

seq1  ATAGCAAACAAAAATAAAAGGGATGAAGCCTGAAGTCACAAAGTGTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAACAAAAATAAAAGGGATGAAGCCTGAAGTCACAAAGTGTGCAT  550

seq1  CAGGTCAAGCTCAGGCACGACAAAGATATTCCAAATTTTAAGAATAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAGCTCAGGCACGACAAAGATATTCCAAATTTTAAGAATAGTAA  600

seq1  AAAAAAAAAAAAGCTCATGTGTTATAATAGAAAATATGGAACCTGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGCTCATGTGTTATAATAGAAAATATGGAACCTGTCCTT  650

seq1  CTTATTCCAAGGGCCATCACTGACACATCTGTAGCCATAGGTAGACTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCAAGGGCCATCACTGACACATCTGTAGCCATAGGTAGACTGAC  700

seq1  AATGAAGG-AAAAAAAAACAGCAATAAAAGATTTATTTAATCAAAATGTG  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGAAAAAAAAAACAGCAATAAAAGATTTATTTAATCAAAATGTG  750

seq1  TATACCATAAGAATCAGCAGCCAGCGTAAGTCAAGAGCCAAAGACACTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATAAGAATCAGCAGCCAGCGTAAGTCAAGAGCCAAAGACACTGG  800

seq1  GGAAGAAGCGCCTGGACCACGTGTAGGATTAAGATTGAACAACACAGGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGCGCCTGGACCACGTGTAGGATTAAGATTGAACAACACAGGGT  850

seq1  GTGCCTTAGACTCTAGAGAAACC-GCTGGGACTGCCT-GGCCTGATTTTT  897
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GTGCCTTAGACTCTAGAGAAACCGGCTGGGACTGCCTGGGCCTGATTTTT  900

seq1  CCTGGCATCCCCCTGTAGTGTTTCCTCTTGAGCATGGCCTGCTTGTGGAA  947
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTGGCATCCCCCTGTAGTGTTT-CTCTTGAGCATGGCCTGCTTGTGGAA  949

seq1  TGAGAC--TTTTTTTTTTTTTTAAATCTATCTGACAAGATAGCTCAGACA  995
      ||||||  ||||||||||||||||||||||||||| ||||||||||||| 
seq2  TGAGACTTTTTTTTTTTTTTTTAAATCTATCTGAC-AGATAGCTCAGAC-  997

seq1  ATTTTATTATTACCTGCTGCTTCATAGAAAAGTAAGACAGAGAAGGTTAA  1045
      ||||||||||   |||||||||||||| ||||| |||  ||||  ||| |
seq2  ATTTTATTAT--ACTGCTGCTTCATAG-AAAGT-AGAACGAGA--GTT-A  1040

seq1  TGTAATATTTC  1056
      |||||||||||
seq2  TGTAATATTTC  1051


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